Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 ID=Chr09-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  70713020

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  48  of  226  ( 27023 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20046961--20047151
61
3.2
61
71
16
207
42
1
6
49
1.36
20047016--20047067
15
3.6
15
80
12
56
44
0
1
53
1.11
20047145--20047186
15
2.7
16
82
14
52
45
0
2
52
1.13
20047136--20047177
15
2.9
15
82
10
52
47
0
0
52
1.00
20052037--20052087
9
5.8
9
77
13
52
74
3
17
3
1.12
20053126--20053218
45
2.1
45
91
0
150
19
19
19
41
1.90
20053177--20053252
33
2.3
33
93
0
125
18
19
22
39
1.92
20055564--20055604
20
2.0
20
100
0
82
34
0
19
46
1.50
20056206--20056233
3
9.3
3
100
0
56
67
0
0
32
0.91
20059542--20059578
19
2.0
19
94
5
67
51
10
0
37
1.37
20060794--20060824
2
15.5
2
100
0
62
51
0
0
48
1.00
20063784--20063915
40
3.3
40
89
4
205
65
0
3
31
1.11
20063875--20063899
11
2.3
11
100
0
50
52
0
8
40
1.31
20068439--20068493
23
2.6
21
80
13
60
54
7
1
36
1.39
20070754--20070827
27
2.7
27
78
2
94
52
8
1
37
1.40
20070884--20070963
27
3.0
27
92
0
124
27
30
28
13
1.94
20071250--20071293
3
14.7
3
100
0
88
34
0
0
65
0.93
20071250--20071403
12
12.6
12
69
14
64
35
0
7
56
1.32
20072023--20072067
18
2.5
18
85
0
63
28
4
46
20
1.69
20074762--20074854
27
3.4
27
93
0
150
16
27
30
25
1.96
20074762--20074868
27
4.0
27
91
0
142
14
27
28
28
1.96
20074918--20074988
27
2.7
26
86
6
106
47
1
7
43
1.39
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20081787--20081811
7
3.6
7
100
0
50
60
0
0
40
0.97
20085244--20085295
16
3.2
16
76
15
54
34
0
3
61
1.14
20085289--20085349
19
3.0
22
75
20
62
45
3
0
50
1.17
20085376--20085429
29
2.0
29
85
10
78
61
1
1
35
1.18
20086295--20086387
41
2.2
42
86
3
134
52
4
3
39
1.37
20090904--20090969
30
2.2
30
81
2
80
45
7
21
25
1.78
20106976--20107009
7
4.9
7
88
0
50
26
0
14
58
1.36
20107544--20107598
27
2.0
28
86
10
78
5
20
0
74
1.01
20109811--20109896
44
2.0
43
86
6
120
50
4
9
36
1.56
20127814--20127839
10
2.6
10
100
0
52
38
0
19
42
1.51
20129407--20129462
27
2.1
27
83
6
69
42
0
1
55
1.10
20149834--20149891
22
2.7
22
89
7
84
70
0
5
24
1.07
20149827--20149891
4
15.0
4
73
20
51
69
0
4
26
1.08
20149823--20149891
22
2.8
24
78
17
79
68
0
5
26
1.12
20151967--20152147
89
2.0
89
95
0
326
48
5
6
39
1.51
20155287--20157094
899
2.0
902
95
0
3262
34
18
11
35
1.86
20159299--20159398
50
2.0
50
90
2
155
37
21
4
38
1.72
20160680--20160709
11
2.7
11
94
0
51
53
0
0
46
1.00
20161077--20161112
19
1.9
18
88
5
54
44
13
8
33
1.74
20163707--20163797
30
3.0
31
84
9
100
54
1
2
41
1.19
20163729--20163803
6
12.1
7
82
14
55
60
0
1
38
1.06
20163756--20163804
3
16.3
3
100
0
98
67
0
0
32
0.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20164653--20164824
41
4.2
41
81
1
211
19
19
25
35
1.95
20165694--20165792
23
4.4
22
67
14
67
23
11
19
46
1.81
20165707--20165807
23
4.3
23
70
9
80
23
7
19
48
1.75
20165621--20165810
68
2.8
68
91
1
299
24
10
18
45
1.81
20165945--20166009
23
2.8
23
82
13
71
36
12
15
35
1.85
20165943--20166009
25
2.9
22
77
18
64
35
11
16
35
1.86
20169853--20170089
50
4.7
50
77
7
194
30
27
16
25
1.97
20169847--20170034
52
3.7
50
78
9
184
31
27
15
25
1.96
20175304--20175388
20
4.1
20
76
11
80
12
20
24
42
1.87
20175314--20175443
44
3.0
44
87
0
179
11
16
25
46
1.80
20175341--20175411
24
3.1
24
74
15
87
9
14
29
46
1.76
20175345--20175415
22
3.2
22
71
15
74
11
12
26
49
1.74
20175868--20175915
10
4.9
10
78
12
55
66
0
0
33
0.92
20175864--20175915
15
3.6
14
85
10
77
65
0
0
34
0.93
20175846--20176280
111
4.0
111
78
11
358
50
6
9
34
1.60
20176073--20176265
98
2.0
98
85
1
262
47
8
11
32
1.69
20178878--20178919
9
4.7
9
85
11
59
47
16
9
26
1.77
20179056--20179099
18
2.4
18
84
0
52
13
0
40
45
1.44
20185542--20185569
6
4.7
6
100
0
56
53
32
0
14
1.41
20205969--20205994
5
5.2
5
100
0
52
0
19
61
19
1.35
20208227--20208267
11
3.7
11
86
0
64
26
7
2
63
1.33
20208219--20208274
22
2.5
22
80
5
69
23
5
8
62
1.45
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20214042--20214082
2
20.5
2
100
0
82
0
48
0
51
1.00
20216791--20216879
43
2.1
43
97
0
169
34
6
21
37
1.80
20220909--20220945
17
2.2
17
90
9
58
35
0
8
56
1.29
20222541--20222581
6
7.2
6
91
2
59
53
26
0
19
1.45
20223033--20223112
30
2.7
31
86
7
105
56
1
3
38
1.25
20223463--20223610
30
5.0
30
84
4
194
34
22
2
40
1.66
20223473--20223622
58
2.5
59
88
6
214
33
24
2
40
1.67
20223464--20223632
88
1.9
88
84
7
227
33
22
2
41
1.67
20224110--20224170
32
1.9
32
93
0
104
77
3
19
0
0.91
20224110--20224170
11
5.7
10
75
19
52
77
3
19
0
0.91
20224109--20224166
16
3.7
15
76
19
64
75
3
20
0
0.94
20224271--20224359
7
13.0
7
76
9
69
77
0
21
1
0.83
20224273--20224362
27
3.5
25
80
14
87
78
0
20
1
0.81
20224273--20224318
13
3.4
14
85
11
60
73
0
26
0
0.83
20224271--20224342
18
3.7
20
76
20
64
73
0
26
0
0.83
20224271--20224343
34
2.2
34
86
11
100
73
0
26
0
0.83
20224953--20225158
19
11.6
17
63
20
57
33
14
9
42
1.77
20224969--20225011
19
2.2
20
88
8
63
53
4
6
34
1.49
20225020--20225166
52
2.8
50
79
9
161
31
14
8
44
1.76
20225284--20225318
18
1.9
18
94
0
61
31
5
11
51
1.61
20225284--20225639
17
20.3
17
72
11
227
32
10
10
45
1.74
20225287--20225353
18
3.8
18
76
7
57
25
14
10
49
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20225372--20225605
35
6.7
34
81
10
251
30
11
11
46
1.75
20225382--20225604
69
3.2
69
86
8
310
29
11
12
47
1.75
20228602--20228648
18
2.6
18
86
0
67
17
2
40
40
1.61
20233303--20233386
21
4.0
21
73
11
57
50
17
17
14
1.79
20233265--20233352
42
2.1
41
83
8
106
44
18
21
15
1.87
20233355--20233410
21
2.7
21
72
10
51
50
16
14
19
1.79
20233820--20233903
21
4.0
21
73
11
57
50
17
17
14
1.79
20233782--20233869
42
2.1
41
83
8
106
44
18
21
15
1.87
20233872--20233927
21
2.7
21
72
10
51
50
16
14
19
1.79
20233085--20234120
517
2.0
517
99
0
2045
37
18
15
27
1.91
20235666--20235720
22
2.5
22
77
14
58
52
3
1
41
1.29
20237376--20237441
34
1.9
35
84
9
91
48
4
1
45
1.32
20238656--20238703
17
2.9
17
90
3
71
27
2
20
50
1.60
20241260--20241285
5
5.2
5
100
0
52
19
19
19
42
1.90
20242255--20242482
46
5.0
45
92
3
366
36
9
25
28
1.87
20249029--20249113
26
3.3
26
89
0
116
42
20
11
25
1.86
20249045--20249124
26
3.1
26
82
7
74
42
20
13
23
1.88
20252639--20252665
5
5.4
5
100
0
54
81
0
0
18
0.69
20258142--20258186
17
2.6
17
92
0
72
20
0
6
73
1.05
20265721--20265763
14
3.0
14
86
3
50
58
4
2
34
1.32
20265989--20266030
4
10.8
4
84
5
59
71
0
4
23
1.05
20267661--20267744
42
2.0
42
81
4
98
16
28
26
28
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20269023--20269710
2
344.0
2
99
0
1349
49
0
0
49
1.04
20270998--20271054
2
28.5
2
96
0
105
50
1
0
47
1.11
20271058--20271142
3
27.3
3
75
15
75
60
3
2
34
1.27
20270998--20271141
6
26.6
5
74
21
50
55
2
2
39
1.26
20271000--20271142
14
11.8
11
79
15
62
55
2
2
39
1.26
20271680--20271730
22
2.4
22
84
12
70
78
7
9
3
1.07
20272637--20273720
50
21.6
50
65
5
423
22
25
23
28
1.99
20272631--20273772
100
11.4
100
90
0
1631
22
25
23
28
1.99
20272692--20273772
501
2.2
499
89
0
1658
21
25
23
29
1.99
20275069--20275115
15
3.1
15
82
11
60
12
17
0
70
1.17

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226