Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 ID=Chr09-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  70713020

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  170  of  226  ( 27023 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54365859--54366104
124
2.0
124
97
0
465
42
2
4
51
1.32
54365936--54366123
41
4.6
40
69
18
127
41
2
3
52
1.31
54366295--54366391
45
2.2
45
87
5
135
31
28
5
34
1.79
54366371--54366403
16
2.1
16
94
0
57
21
33
6
39
1.78
54366816--54366853
3
12.7
3
100
0
76
65
0
0
34
0.93
54368371--54368399
13
2.2
13
100
0
58
58
6
6
27
1.50
54372713--54372896
68
2.7
68
82
0
224
36
15
23
25
1.93
54373224--54373469
68
3.6
68
84
0
312
36
13
22
26
1.92
54372383--54373415
519
2.0
519
95
0
1877
33
12
25
28
1.92
54373224--54373469
136
1.8
136
86
0
348
36
13
22
26
1.92
54373224--54373511
68
4.2
69
82
2
305
36
15
22
26
1.93
54377461--54377504
23
2.0
23
90
4
72
36
25
6
31
1.82
54379163--54379208
11
4.3
10
86
13
65
26
28
0
45
1.54
54379212--54379270
29
2.1
28
84
6
75
33
0
5
61
1.18
54380363--54380402
7
5.7
7
100
0
80
27
0
15
57
1.38
54381353--54381392
21
1.9
21
94
0
71
35
40
17
7
1.78
54384787--54385075
125
2.3
125
92
0
470
27
20
20
31
1.97
54396658--54396688
15
2.0
16
93
6
55
25
3
0
70
1.02
54398121--54398303
51
3.6
51
80
5
176
23
18
28
30
1.97
54398530--54398561
16
2.0
16
93
0
55
59
0
15
25
1.36
54399458--54399699
43
5.6
43
84
1
272
28
32
18
20
1.96
54399458--54399724
129
2.1
129
81
4
306
29
31
17
21
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54399905--54399942
19
2.0
19
94
0
67
57
2
10
28
1.45
54405560--54406113
9
64.7
9
64
20
138
33
1
18
46
1.61
54405560--54405772
25
8.5
25
74
13
138
31
1
20
46
1.59
54405562--54406100
41
12.8
41
68
15
219
33
2
18
46
1.61
54405560--54406113
59
9.5
59
67
20
220
33
1
18
46
1.61
54405693--54405935
16
14.4
16
67
17
70
32
2
18
45
1.63
54405767--54405796
12
2.5
12
94
0
51
40
6
10
43
1.64
54405827--54405910
25
3.4
25
78
6
73
35
1
17
45
1.57
54405624--54406116
190
2.7
179
92
6
771
33
2
18
46
1.61
54405981--54406113
25
5.3
25
73
12
96
33
0
18
48
1.53
54405981--54406113
50
2.7
50
71
13
121
33
0
18
48
1.53
54406049--54406114
34
1.9
34
87
0
96
31
1
16
50
1.55
54406112--54406140
12
2.4
12
100
0
58
41
0
0
58
0.98
54406223--54406311
18
4.8
18
79
14
101
41
1
12
44
1.49
54406251--54406311
17
3.5
17
86
4
86
42
0
13
44
1.43
54406215--54406425
39
5.6
37
79
12
171
41
1
12
44
1.53
54406352--54406406
13
4.2
13
75
13
58
41
0
12
45
1.42
54406208--54406443
35
6.2
38
75
14
184
41
1
12
44
1.52
54406259--54406483
114
2.0
114
85
1
308
42
1
11
44
1.51
54412377--54412432
15
3.9
14
79
6
58
37
33
0
28
1.58
54412372--54412437
22
3.0
22
84
2
87
36
33
1
28
1.67
54412674--54412707
15
2.4
14
85
9
50
44
29
0
26
1.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54412821--54413062
41
5.9
41
88
0
322
28
26
22
23
1.99
54437476--54437519
22
2.0
22
100
0
88
40
9
22
27
1.84
54444441--54444487
18
2.6
18
83
6
60
10
0
14
74
1.07
54444508--54444591
42
2.0
43
83
6
109
33
11
2
52
1.51
54446027--54446052
6
4.3
6
100
0
52
15
0
15
69
1.20
54447832--54447875
23
1.9
22
82
17
54
36
25
0
38
1.56
54447923--54448013
45
2.0
45
91
0
146
31
23
17
27
1.97
54448021--54448203
51
3.6
49
76
10
181
30
29
17
22
1.97
54449399--54449761
174
2.0
178
91
4
583
21
12
11
54
1.68
54453272--54453311
19
2.0
20
85
4
55
37
12
20
30
1.89
54456975--54457015
21
2.1
19
86
9
55
46
12
7
34
1.69
54456975--54457037
29
2.2
29
100
0
126
46
12
6
34
1.68
54457026--54457050
11
2.3
11
100
0
50
36
16
0
48
1.46
54472582--54472635
25
2.1
26
83
10
67
29
5
1
62
1.28
54472596--54472649
25
2.2
25
80
12
58
38
1
1
57
1.20
54478790--54478874
36
2.4
37
86
7
122
24
17
16
41
1.90
54481355--54481405
7
7.1
7
93
6
77
86
0
0
13
0.58
54489834--54489890
22
2.6
21
72
10
51
61
8
14
15
1.56
54493021--54493062
17
2.3
19
84
8
52
64
7
0
28
1.20
54497744--54497795
26
2.0
26
85
7
70
36
17
5
40
1.73
54504165--54504219
22
2.5
22
78
0
65
36
20
10
32
1.87
54504660--54504722
5
12.4
5
86
9
56
55
1
0
42
1.09
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54509889--54509924
6
6.2
6
96
3
65
50
0
0
50
1.00
54514528--54514584
24
2.4
24
87
0
78
45
8
7
38
1.62
54514668--54514700
2
16.5
2
100
0
66
51
0
0
48
1.00
54515868--54515896
2
14.5
2
100
0
58
51
0
0
48
1.00
54531456--54531582
61
2.1
61
100
0
254
33
1
22
43
1.63
54536929--54537029
41
2.5
40
88
3
148
65
0
2
31
1.08
54536980--54537005
11
2.4
11
100
0
52
53
0
7
38
1.30
54544955--54545691
44
16.7
44
78
5
632
29
16
24
29
1.97
54544958--54545690
133
5.5
133
92
0
1200
28
16
24
29
1.97
54545715--54545831
44
2.7
44
93
0
198
29
20
23
27
1.99
54547729--54547767
13
2.8
13
81
11
51
43
5
0
51
1.24
54547939--54547973
17
2.1
17
89
10
54
20
2
5
71
1.19
54550211--54550298
41
2.1
41
89
2
131
50
5
22
21
1.70
54569081--54569187
30
3.6
28
78
15
83
57
5
2
33
1.36
54569199--54569250
26
2.0
25
85
10
70
65
0
5
28
1.16
54569325--54569368
17
2.6
17
85
3
63
47
0
11
40
1.39
54569497--54569535
3
13.0
3
88
0
60
64
2
2
30
1.21
54569851--54569948
21
4.7
21
86
10
112
40
14
8
36
1.75
54570407--54570505
44
2.2
44
78
7
103
28
17
21
33
1.95
54570820--54571211
88
4.6
87
83
6
431
20
22
27
29
1.98
54571191--54571435
44
5.6
44
79
6
248
28
26
16
27
1.97
54571191--54571435
88
2.8
87
80
5
278
28
26
16
27
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54576752--54576808
30
1.9
30
85
7
80
56
3
3
36
1.34
54576763--54576847
42
2.0
42
84
4
109
54
4
2
38
1.34
54577164--54577202
3
13.0
3
88
0
60
64
5
0
30
1.15
54577555--54577580
12
2.2
12
100
0
52
42
15
7
34
1.75
54580393--54580566
48
3.6
48
88
0
204
22
30
20
27
1.98
54588942--54589019
33
2.4
32
80
6
84
34
17
21
25
1.96
54593023--54593060
18
2.1
18
95
0
67
18
28
5
47
1.70
54599319--54602361
924
3.3
926
89
3
4581
32
16
19
31
1.94
54604497--54607370
935
3.1
934
94
0
4978
33
16
18
31
1.93
54608545--54608619
24
3.2
24
90
3
116
17
16
21
45
1.85
54616063--54616092
12
2.4
13
94
5
53
20
6
6
66
1.38
54622129--54622560
213
2.0
213
100
0
864
25
21
18
34
1.96
54639517--54639752
26
9.1
26
90
0
357
35
19
18
26
1.95
54639954--54640003
26
1.9
26
87
0
73
24
22
20
34
1.97
54641291--54641338
15
3.3
14
85
5
60
75
0
20
4
0.97
54641285--54641340
21
2.7
21
86
2
69
71
0
23
5
1.06
54647260--54647318
15
3.9
14
82
17
66
74
3
0
22
0.96
54656689--54656741
25
2.1
25
96
0
97
33
5
30
30
1.81
54660752--54660780
7
4.1
7
100
0
58
0
13
13
72
1.13
54670242--54670295
23
2.4
23
82
11
60
40
9
9
40
1.69
54677370--54677436
33
2.0
33
100
0
134
47
14
14
22
1.81
54681311--54681399
40
2.2
40
87
0
124
37
15
12
34
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54688792--54688830
17
2.2
19
86
9
55
66
12
5
15
1.41
54691067--54691133
26
2.6
26
79
11
75
40
8
1
49
1.43
54691081--54691134
27
2.0
28
89
7
85
40
7
0
51
1.30
54691166--54691228
27
2.3
27
86
0
90
30
20
33
15
1.94
54693159--54693221
27
2.3
27
78
10
83
14
31
22
31
1.93
54693237--54693300
27
2.4
27
86
0
83
45
1
14
39
1.54
54694321--54694364
22
2.0
22
100
0
88
50
18
9
22
1.75
54695759--54695857
23
4.3
23
92
0
153
32
27
20
20
1.97
54707121--54707286
41
4.0
41
94
0
287
28
20
28
22
1.99
54707489--54707576
37
2.6
35
82
10
112
29
10
26
34
1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226