Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 ID=Chr09-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  70713020

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  135  of  226  ( 27023 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45151195--45151298
39
2.7
39
95
0
181
34
23
7
34
1.83
45158925--45158957
11
3.0
11
91
8
50
54
0
3
42
1.15
45159262--45159296
18
1.9
18
94
0
61
8
2
8
80
1.01
45159264--45159303
18
2.2
18
86
0
53
10
2
10
77
1.08
45159619--45159657
15
2.5
16
84
15
55
43
2
0
53
1.14
45160963--45161120
79
2.0
79
96
0
289
31
11
24
32
1.91
45163491--45163616
21
6.1
20
80
6
144
53
14
15
17
1.74
45163493--45163614
42
2.9
42
93
1
201
53
14
13
18
1.73
45171686--45171749
25
2.6
25
85
5
85
28
21
20
29
1.98
45171903--45171958
30
1.9
28
82
13
69
42
7
19
30
1.78
45176158--45176284
49
2.6
49
87
0
182
25
24
19
30
1.98
45176251--45176319
35
2.0
35
100
0
138
28
28
14
27
1.95
45176291--45176480
50
3.7
49
79
7
173
25
28
19
26
1.99
45179624--45179657
16
2.1
16
88
5
50
8
0
14
76
1.01
45180964--45181023
21
2.9
21
82
5
77
40
28
15
16
1.89
45194768--45194819
26
2.0
26
100
0
104
42
7
11
38
1.70
45196730--45196929
82
2.4
81
80
4
213
23
19
28
29
1.98
45196735--45196930
41
4.8
41
83
1
180
23
18
27
30
1.98
45197529--45197601
33
2.2
33
92
0
119
16
5
46
31
1.70
45197643--45197682
7
5.6
7
84
3
53
7
0
52
40
1.30
45198730--45198775
21
2.2
21
84
7
58
23
50
2
23
1.61
45198731--45198775
22
2.1
21
83
4
54
24
51
2
22
1.60
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45203232--45203352
43
2.8
43
84
1
143
25
17
29
27
1.97
45203725--45203776
26
2.0
26
100
0
104
42
7
11
38
1.70
45205955--45206023
27
2.5
26
81
9
75
33
1
2
62
1.19
45206249--45206280
16
2.0
16
93
0
55
34
0
0
65
0.93
45219150--45219657
44
11.6
45
69
10
205
29
20
23
26
1.99
45219126--45219622
219
2.3
220
93
1
838
29
20
23
26
1.99
45219194--45219573
44
8.7
43
70
12
215
28
20
22
27
1.99
45221176--45221325
49
2.9
52
75
13
150
38
2
2
57
1.24
45223755--45223806
26
2.0
26
96
0
95
44
7
9
38
1.66
45228731--45228961
51
4.6
50
78
5
232
30
26
17
25
1.97
45228775--45229010
50
4.7
50
78
6
233
30
27
17
25
1.97
45228735--45229010
152
1.8
152
90
1
446
30
26
18
25
1.98
45228786--45229020
101
2.3
101
83
4
269
30
27
17
25
1.97
45231744--45231843
47
2.2
44
83
11
116
29
24
15
32
1.95
45231771--45231862
47
1.9
47
84
2
121
31
26
16
26
1.96
45236179--45236230
26
2.0
26
92
0
86
46
7
9
36
1.66
45238358--45238409
26
2.0
26
92
0
86
44
5
9
40
1.61
45240448--45240498
26
2.0
26
92
0
84
45
5
9
39
1.62
45242536--45242585
26
1.9
26
91
0
82
46
8
10
36
1.67
45244705--45244754
26
1.9
26
91
0
82
46
8
10
36
1.67
45245603--45245652
26
1.9
26
91
0
82
46
8
10
36
1.67
45244162--45245927
898
2.0
897
97
0
3325
33
15
15
35
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45247728--45247777
26
1.9
26
91
0
82
46
8
10
36
1.67
45251908--45251957
26
1.9
26
95
0
91
46
6
10
38
1.62
45264331--45264380
26
1.9
26
95
0
91
44
6
10
40
1.63
45268423--45268472
26
1.9
26
91
0
82
46
8
10
36
1.67
45270537--45270588
26
2.0
26
92
0
86
48
9
5
36
1.60
45272332--45272407
15
5.1
15
67
10
57
46
6
22
25
1.76
45272328--45272407
30
2.7
30
94
0
133
47
6
22
23
1.74
45276997--45277076
30
2.7
30
90
0
124
46
6
23
23
1.75
45277659--45277689
12
2.5
12
94
5
53
9
19
12
58
1.62
45277879--45277928
26
1.9
26
95
0
91
44
8
12
36
1.71
45279928--45279977
26
1.9
26
87
0
73
44
8
10
38
1.68
45281981--45282030
26
1.9
26
91
0
82
44
8
12
36
1.71
45284034--45284083
26
1.9
26
91
0
82
44
6
10
40
1.63
45287718--45287767
26
1.9
26
95
0
91
46
4
12
38
1.60
45291737--45291771
16
2.2
16
89
0
52
17
5
0
77
0.96
45291737--45291782
23
2.0
24
86
4
67
19
4
0
76
0.96
45291838--45291929
22
4.0
23
73
17
75
30
2
4
63
1.26
45293670--45293716
24
1.9
25
86
4
69
34
27
8
29
1.87
45296458--45296512
26
2.1
26
96
0
101
38
9
10
41
1.72
45298490--45298544
26
2.1
26
93
0
92
38
10
10
40
1.76
45302170--45302224
26
2.1
26
96
0
101
38
9
10
41
1.72
45304433--45304482
26
1.9
26
100
0
100
46
4
12
38
1.60
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45307402--45307472
35
2.0
35
100
0
142
35
19
8
36
1.82
45310741--45310790
26
1.9
26
100
0
100
44
6
12
38
1.66
45314330--45314405
15
5.1
15
67
10
57
46
6
22
25
1.76
45314326--45314405
30
2.7
30
94
0
133
47
6
22
23
1.74
45314749--45314901
22
7.0
22
90
0
225
32
14
26
26
1.94
45322899--45322974
15
5.1
15
67
10
57
46
6
22
25
1.76
45322895--45322974
30
2.7
30
94
0
133
47
6
22
23
1.74
45332929--45332974
23
2.0
23
83
8
58
50
2
6
41
1.40
45333604--45333658
19
2.7
21
88
11
96
36
14
10
38
1.81
45335188--45335227
3
13.3
3
100
0
80
67
0
0
32
0.91
45335253--45335310
6
9.2
6
78
10
53
74
3
6
15
1.17
45341557--45341634
33
2.4
33
84
4
104
48
20
17
12
1.80
45351035--45351090
27
2.1
27
89
0
85
39
17
19
23
1.92
45351074--45351126
26
2.0
27
92
3
90
24
20
24
30
1.99
45355698--45355752
26
2.1
26
80
12
60
43
3
3
49
1.37
45355717--45356265
120
4.6
120
93
1
940
43
2
5
48
1.39
45355797--45356227
66
7.1
63
64
23
253
43
3
5
48
1.41
45355862--45355908
16
3.0
16
78
12
53
46
0
2
51
1.13
45355982--45356028
16
3.0
16
78
12
53
46
0
2
51
1.13
45356408--45356498
45
2.0
44
89
6
139
34
28
5
31
1.80
45356477--45356541
16
4.1
16
91
0
103
21
33
4
40
1.74
45360712--45360754
21
2.0
22
81
4
52
55
6
0
37
1.27
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45363560--45363635
13
5.8
13
77
14
84
31
19
3
44
1.69
45368731--45368795
33
2.0
33
96
0
121
40
9
24
26
1.85
45371309--45371348
18
2.1
18
86
9
53
15
7
10
67
1.41
45380057--45380219
81
2.0
81
93
0
281
28
8
15
47
1.74
45380294--45381028
370
2.0
370
91
1
1177
35
11
20
32
1.89
45382966--45382993
12
2.3
12
100
0
56
64
14
0
21
1.29
45383861--45383904
14
3.2
13
90
3
61
34
9
9
47
1.67
45386706--45386800
35
2.7
35
80
0
109
30
26
14
28
1.95
45390865--45390920
18
3.2
18
75
12
53
44
5
12
37
1.65
45390891--45390937
17
2.8
16
79
17
51
46
6
12
34
1.67
45397671--45397726
18
3.2
18
75
12
53
44
5
14
35
1.68
45398220--45398258
14
2.8
13
85
11
51
33
7
17
41
1.79
45398243--45398282
20
2.0
20
90
0
62
27
10
12
50
1.72
45398230--45398298
14
4.4
15
72
19
52
30
8
15
44
1.77
45398452--45398502
26
2.2
24
78
21
56
60
5
0
33
1.21
45401494--45401543
6
8.3
6
97
0
82
36
0
64
0
0.94
45417837--45417897
32
1.9
32
86
0
86
21
6
32
39
1.79
45418075--45418114
20
2.0
21
90
5
64
45
20
2
32
1.64
45421727--45421768
6
7.0
6
94
0
75
64
0
19
16
1.30
45425444--45425570
43
3.0
43
79
15
154
22
18
28
29
1.98
45426410--45426574
23
7.0
23
75
4
168
24
19
15
40
1.90
45426410--45426574
47
3.5
47
99
0
321
24
19
15
40
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45426418--45426626
94
2.2
94
86
3
276
26
17
15
40
1.90
45426943--45426981
2
19.5
2
100
0
78
48
0
0
51
1.00
45429368--45429399
16
2.0
16
100
0
64
56
25
6
12
1.59
45429832--45429863
11
2.9
11
90
0
55
9
6
28
56
1.55
45432469--45432504
13
2.8
13
95
0
63
44
30
8
16
1.77
45438509--45438538
8
3.8
8
100
0
60
26
0
10
63
1.26
45448140--45448165
2
13.0
2
100
0
52
50
0
0
50
1.00
45448170--45448211
2
20.5
2
95
4
75
50
0
47
2
1.14
45453290--45453430
49
2.9
50
78
7
164
25
14
30
29
1.95
45453290--45453474
98
1.9
98
84
2
246
24
14
29
30
1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226