Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 ID=Chr09-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  70713020

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  156  of  226  ( 27023 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50566169--50566241
38
1.9
37
84
13
96
31
23
1
43
1.62
50566169--50566241
37
2.0
36
82
15
87
31
23
1
43
1.62
50566371--50566802
51
8.5
50
75
6
352
31
26
15
26
1.96
50566381--50566802
151
2.8
153
79
6
419
31
26
15
26
1.96
50566371--50566802
102
4.3
102
83
5
403
31
26
15
26
1.96
50571206--50571334
43
3.0
43
80
13
165
31
28
18
20
1.97
50574753--50574833
29
2.8
29
75
20
80
40
1
2
55
1.21
50574753--50574826
30
2.7
27
75
17
71
41
1
1
55
1.17
50575467--50575528
2
31.0
2
100
0
124
50
0
0
50
1.00
50575735--50575773
20
1.9
20
89
5
60
64
0
7
28
1.21
50589192--50589248
28
2.0
28
96
0
105
59
7
15
17
1.57
50589591--50589634
14
3.1
14
83
6
52
13
18
2
65
1.36
50589608--50589635
14
2.0
14
100
0
56
21
14
0
64
1.29
50593646--50593758
30
3.8
30
85
3
140
30
20
25
23
1.99
50593938--50594140
32
6.4
32
90
0
291
37
20
21
20
1.95
50594168--50594228
27
2.3
26
81
15
72
34
22
22
19
1.97
50594291--50594368
24
3.2
24
87
3
104
52
21
5
20
1.66
50594304--50594401
24
4.1
24
76
11
94
51
20
5
23
1.67
50594473--50594616
27
5.4
27
82
1
166
25
22
18
34
1.96
50598055--50598098
22
2.0
22
100
0
88
31
13
9
45
1.75
50600915--50600962
18
2.7
17
81
9
60
41
4
16
37
1.68
50603093--50603172
39
2.1
39
81
11
94
27
3
2
66
1.22
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50603210--50603272
20
2.9
22
79
11
76
26
0
7
65
1.20
50603332--50603356
6
4.2
6
100
0
50
32
0
0
68
0.90
50603525--50603567
20
2.1
21
86
4
61
13
4
2
79
1.00
50608864--50608925
20
2.9
22
79
13
76
27
0
8
64
1.21
50608987--50609029
12
3.6
12
83
0
50
39
0
4
55
1.20
50609528--50609660
9
13.7
9
69
20
56
30
2
0
66
1.03
50609574--50609640
17
3.6
17
74
18
71
34
1
0
64
1.03
50609523--50609672
39
3.8
39
91
6
223
34
2
0
64
1.05
50611071--50611103
14
2.3
15
89
5
50
27
12
33
27
1.92
50612450--50612857
44
9.3
44
65
11
163
25
26
24
23
2.00
50612437--50613025
88
6.7
88
83
2
655
26
24
25
24
2.00
50612437--50613017
264
2.2
264
87
1
806
26
24
25
23
2.00
50612863--50613001
44
3.1
45
66
4
111
25
20
28
25
1.99
50613205--50613308
44
2.4
44
81
3
120
29
18
24
27
1.98
50613873--50613924
21
2.6
20
93
6
88
36
11
15
36
1.84
50613873--50613947
19
3.5
22
80
14
70
36
9
16
38
1.80
50614218--50614303
21
4.2
20
78
11
84
29
1
4
65
1.20
50614265--50614306
3
14.0
3
94
0
75
30
0
2
66
1.04
50614388--50614422
2
18.0
2
94
5
63
48
0
0
51
1.00
50614456--50614490
17
2.1
17
94
0
61
37
11
0
51
1.38
50614628--50614717
30
2.9
30
77
12
83
33
2
5
58
1.33
50617452--50617517
21
3.2
20
76
18
64
69
9
1
19
1.23
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50618047--50618097
25
2.2
23
89
10
77
39
7
3
49
1.51
50618227--50618286
20
3.0
20
67
0
57
43
1
0
55
1.10
50618307--50618386
31
2.6
30
82
3
106
43
0
2
53
1.14
50619655--50619689
10
3.6
10
88
7
54
0
11
0
88
0.51
50619655--50619692
12
3.5
11
86
10
51
0
10
0
89
0.49
50619655--50619692
16
2.4
16
87
12
60
0
10
0
89
0.49
50622619--50622754
52
2.6
50
85
12
184
30
9
20
39
1.84
50624428--50624462
18
1.9
18
88
0
52
57
5
0
37
1.23
50624789--50624854
33
2.0
33
96
0
123
40
18
3
37
1.66
50626672--50626775
49
2.1
49
92
0
172
30
8
9
50
1.65
50628076--50628105
15
1.9
16
93
6
53
43
0
6
50
1.28
50628050--50628635
120
4.9
120
97
0
1102
41
1
4
52
1.29
50628196--50628225
15
1.9
16
93
6
53
43
0
6
50
1.28
50628232--50628292
26
2.4
25
83
8
77
39
0
1
59
1.08
50628316--50628345
15
1.9
16
93
6
53
43
0
6
50
1.28
50628338--50628373
18
2.1
17
90
10
56
36
2
0
61
1.11
50628436--50628465
15
1.9
16
93
6
53
43
0
6
50
1.28
50628458--50628493
18
2.1
17
90
10
56
36
2
0
61
1.11
50628555--50628584
15
1.9
16
93
6
53
43
0
6
50
1.28
50628838--50628893
16
3.5
16
90
0
85
25
33
1
39
1.66
50630755--50631101
162
2.1
162
94
0
613
26
20
17
36
1.94
50645715--50645757
22
2.0
22
86
9
61
60
2
2
34
1.22
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50647491--50647528
15
2.6
15
87
4
51
71
15
0
13
1.16
50647582--50647612
2
15.5
2
100
0
62
51
0
0
48
1.00
50648074--50648420
162
2.1
162
96
0
640
26
21
17
34
1.95
50652658--50652701
15
2.9
15
89
3
61
38
6
0
54
1.27
50654940--50654994
22
2.5
22
93
3
92
32
14
23
29
1.94
50655796--50656168
162
2.3
162
91
1
595
28
20
17
34
1.95
50663902--50663941
7
5.6
7
90
3
62
42
0
15
42
1.46
50670126--50670153
6
4.7
6
100
0
56
0
14
0
85
0.59
50670902--50670964
25
2.4
25
82
15
83
58
3
1
36
1.23
50672524--50672566
22
2.0
22
86
9
61
60
2
2
34
1.22
50673385--50673431
23
2.0
23
100
0
94
25
4
29
40
1.75
50687962--50688011
27
1.9
27
88
8
77
58
6
0
36
1.23
50688054--50688106
26
2.0
26
100
0
106
67
3
7
20
1.31
50688205--50688279
3
24.3
3
74
15
64
58
2
6
32
1.38
50689825--50689884
26
2.4
25
81
13
70
48
1
10
40
1.47
50689889--50689975
46
1.9
45
81
9
106
43
4
14
36
1.67
50690052--50690098
23
2.0
25
83
8
62
53
2
8
36
1.44
50694263--50694322
20
3.0
20
76
9
77
38
3
3
55
1.33
50694263--50694346
40
2.1
40
84
8
109
40
2
4
52
1.35
50699625--50699674
25
2.0
25
88
7
75
56
10
32
2
1.44
50701553--50701588
18
2.0
18
88
0
54
27
22
8
41
1.82
50704199--50704237
20
1.9
21
89
5
62
61
7
5
25
1.44
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50704727--50704768
21
1.9
22
85
9
59
42
2
0
54
1.13
50705041--50705128
38
2.2
41
80
11
103
40
1
0
57
1.06
50705122--50705189
35
2.0
33
82
5
82
44
0
1
54
1.09
50710200--50710273
24
3.1
24
73
7
69
24
10
9
55
1.64
50710199--50710273
25
3.1
25
69
7
64
24
10
9
56
1.63
50713035--50713381
162
2.1
162
95
0
622
25
21
17
35
1.95
50718637--50718710
37
2.0
37
82
10
89
33
9
4
52
1.53
50725479--50725528
25
2.0
24
81
11
57
22
0
8
70
1.13
50726709--50726745
17
2.1
18
90
5
58
45
16
5
32
1.70
50730541--50730591
25
2.2
23
86
10
68
41
7
3
47
1.51
50730595--50730632
9
4.3
9
93
6
69
34
0
0
65
0.93
50730738--50730937
110
1.9
109
81
11
252
42
0
1
56
1.10
50745733--50745943
43
4.9
43
81
5
239
29
31
17
21
1.96
50746205--50746235
15
2.1
15
93
0
53
19
32
0
48
1.49
50755221--50755313
40
2.3
41
83
7
111
23
20
15
40
1.90
50755240--50755327
41
2.1
41
81
4
97
18
19
14
47
1.82
50755751--50755801
14
3.6
14
86
2
75
29
50
0
19
1.48
50756265--50756301
14
2.6
14
95
0
65
45
29
0
24
1.53
50756559--50756750
41
4.7
41
88
5
223
31
25
21
21
1.98
50756804--50756913
40
2.8
40
91
4
179
17
23
24
34
1.96
50759906--50759967
26
2.4
26
97
0
115
37
12
27
22
1.91
50761639--50761689
25
2.1
24
89
7
77
37
7
5
49
1.56
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50763066--50763156
47
1.9
47
97
0
173
30
15
8
45
1.77
50764510--50764576
34
1.9
35
84
3
91
34
8
11
44
1.73
50777291--50777324
13
2.5
14
90
4
52
64
8
0
26
1.22
50778459--50778527
30
2.3
30
77
5
77
50
0
0
49
1.00
50778847--50778906
21
2.8
22
82
10
70
55
1
0
43
1.10
50778888--50778993
11
10.4
11
75
20
97
59
0
1
38
1.08
50778878--50779010
39
3.4
39
86
7
205
63
0
1
35
1.04
50778897--50778929
16
2.0
17
94
5
59
60
0
0
39
0.97
50778918--50778982
30
2.1
31
83
8
80
60
0
3
36
1.13
50785887--50786179
162
1.8
162
88
0
451
26
18
16
38
1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226