Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 ID=Chr09-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  70713020

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  109  of  226  ( 27023 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37377302--37377357
24
2.3
24
81
9
69
19
26
17
35
1.94
37397916--37398044
50
2.6
49
86
4
170
27
20
30
22
1.98
37398019--37398144
49
2.6
49
91
1
200
30
20
23
24
1.98
37398350--37398388
20
2.0
20
90
10
62
56
5
23
15
1.59
37399549--37399579
6
5.2
6
100
0
62
19
0
0
80
0.71
37407756--37407820
20
3.2
20
87
8
80
12
35
21
30
1.90
37407772--37407843
20
3.5
20
81
9
83
11
31
23
33
1.90
37411158--37411192
17
2.1
17
88
0
52
28
25
17
28
1.97
37411729--37411771
18
2.4
18
81
18
54
4
25
0
69
1.07
37411757--37411824
26
2.6
26
95
2
109
4
36
0
58
1.18
37422984--37423042
22
2.7
22
91
0
91
35
15
25
23
1.94
37425070--37425113
23
2.0
22
81
4
52
15
34
25
25
1.95
37430280--37430333
16
3.3
16
76
5
63
53
0
0
46
1.00
37430280--37430333
17
3.3
17
72
23
53
53
0
0
46
1.00
37430714--37430816
27
3.8
27
84
2
127
22
22
33
21
1.97
37430882--37430926
22
2.1
21
87
4
63
66
2
31
0
1.04
37433134--37433175
16
2.7
15
85
7
57
57
2
2
38
1.25
37433212--37433294
39
2.2
38
95
2
148
38
2
3
55
1.30
37433329--37433448
59
2.0
59
83
3
152
51
15
1
31
1.53
37433489--37433575
27
3.4
27
81
15
112
50
12
2
34
1.53
37433917--37433960
3
15.3
3
86
9
65
0
36
0
63
0.95
37433913--37433961
14
3.6
14
89
10
75
0
36
0
63
0.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37433917--37433960
20
2.2
20
95
0
79
0
36
0
63
0.95
37433919--37433964
14
3.2
15
93
6
78
0
39
0
60
0.97
37433923--37433972
14
3.6
13
86
10
64
0
38
0
62
0.96
37434096--37434161
27
2.4
27
94
0
123
10
39
22
27
1.87
37434223--37434279
25
2.2
25
82
14
64
49
3
1
45
1.29
37434578--37434602
7
3.6
7
100
0
50
28
0
0
72
0.86
37435020--37435087
35
2.0
33
83
8
84
55
4
2
36
1.35
37436911--37436945
18
2.0
17
88
5
52
48
5
17
28
1.69
37441609--37441652
19
2.4
19
84
3
54
38
6
2
52
1.41
37446396--37446437
2
21.0
2
100
0
84
0
50
0
50
1.00
37449433--37449509
23
3.2
23
63
22
59
50
11
10
27
1.71
37455216--37455279
31
2.0
31
82
8
76
20
50
0
29
1.49
37463300--37463406
51
2.1
51
84
3
135
29
24
16
28
1.97
37463155--37463915
258
2.9
257
87
4
1059
26
26
18
29
1.98
37466217--37466256
8
5.0
8
85
11
55
12
2
10
75
1.15
37466223--37466252
9
3.4
9
95
4
53
10
0
10
80
0.92
37468117--37468358
50
4.7
50
87
5
322
21
29
21
26
1.99
37469194--37469260
13
5.1
13
81
3
89
34
25
8
31
1.87
37469391--37469447
30
1.9
29
82
10
71
29
24
5
40
1.77
37474575--37474664
41
2.2
41
91
0
144
36
15
15
32
1.89
37476065--37476097
16
1.9
18
88
11
52
45
36
3
15
1.61
37476774--37476816
18
2.6
17
82
10
54
13
20
0
65
1.27
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37476778--37476822
24
1.9
24
86
4
65
11
20
0
68
1.19
37476786--37476830
24
1.9
23
86
13
65
8
17
2
71
1.23
37477748--37477797
20
2.4
20
90
6
73
12
2
8
78
1.05
37477749--37477797
10
4.8
10
80
14
64
12
2
8
77
1.07
37479352--37479441
41
2.2
41
95
0
162
35
16
16
31
1.92
37480351--37480435
18
4.7
19
78
8
63
64
8
2
24
1.33
37480376--37480420
3
15.0
3
100
0
90
66
0
0
33
0.92
37482800--37482838
19
2.2
17
86
9
51
43
7
2
46
1.46
37485245--37485313
22
3.1
22
81
8
86
40
15
24
18
1.90
37491344--37491420
26
3.0
26
84
3
102
15
24
23
36
1.94
37491471--37491536
25
2.6
25
78
0
69
21
27
18
33
1.96
37493062--37493095
9
3.8
9
84
0
50
67
0
2
29
1.05
37493061--37493101
18
2.2
19
91
4
66
68
0
4
26
1.10
37495911--37495950
21
1.9
21
84
0
53
47
0
0
52
1.00
37496787--37496814
8
3.5
8
100
0
56
64
0
10
25
1.26
37496882--37496915
10
3.3
10
95
4
59
35
0
0
64
0.94
37496875--37496915
21
2.0
20
85
9
55
39
0
0
60
0.96
37501057--37501164
51
2.1
51
82
5
128
40
6
25
27
1.80
37519742--37519840
46
2.2
46
94
0
171
49
8
6
36
1.57
37527413--37527530
54
2.2
54
81
4
132
24
27
27
20
1.99
37529004--37529044
16
2.6
16
88
0
55
29
34
12
24
1.91
37530125--37530187
28
2.3
28
75
5
67
53
9
11
25
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37531846--37531870
9
2.8
9
100
0
50
92
8
0
0
0.40
37533939--37533998
28
2.1
29
84
9
79
61
3
0
35
1.12
37537906--37538175
148
1.8
147
82
0
351
28
22
19
28
1.98
37538636--37538899
46
5.7
46
90
0
384
34
25
15
25
1.95
37539354--37539411
24
2.4
24
82
5
73
29
22
13
34
1.93
37540402--37540452
5
10.4
5
76
19
54
0
17
0
82
0.67
37540401--37540459
7
8.7
7
77
18
63
0
16
0
83
0.66
37540402--37540457
13
4.3
13
90
6
87
0
17
0
82
0.68
37542762--37542795
12
2.8
12
81
0
50
8
23
23
44
1.81
37542927--37542973
19
2.5
20
86
6
62
42
10
21
25
1.85
37552745--37552776
8
4.1
8
96
4
57
53
9
12
25
1.68
37557719--37557955
50
4.7
50
75
5
219
26
16
25
31
1.96
37557719--37557955
99
2.4
100
81
5
266
26
16
25
31
1.96
37573130--37573178
18
2.6
19
78
18
57
22
2
2
73
1.04
37573129--37573178
22
2.3
22
83
10
66
22
2
2
74
1.03
37573379--37573407
14
2.0
15
93
6
51
13
20
13
51
1.75
37579657--37579683
12
2.2
12
100
0
54
14
0
0
85
0.61
37579652--37579701
22
2.3
21
80
10
55
20
2
2
76
0.99
37584196--37584246
20
2.5
20
87
3
66
25
29
17
27
1.98
37586745--37586818
21
3.7
19
72
17
62
68
1
21
8
1.23
37590863--37590930
34
2.0
34
97
0
127
36
11
19
32
1.88
37592714--37592755
20
2.1
20
86
8
59
26
16
2
54
1.54
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37597152--37597184
14
2.2
16
89
10
52
30
0
3
66
1.06
37600371--37600415
18
2.6
18
86
10
58
46
0
4
48
1.22
37616121--37616171
20
2.6
20
90
3
77
25
27
19
27
1.99
37619377--37619405
11
2.6
11
100
0
58
72
6
6
13
1.26
37621802--37621852
20
2.6
20
90
3
77
25
27
19
27
1.99
37621980--37622007
11
2.5
11
100
0
56
28
0
10
60
1.30
37622029--37622159
41
3.2
41
97
0
244
31
17
16
34
1.93
37625446--37625510
22
2.9
22
79
2
67
26
32
4
36
1.77
37631754--37631803
22
2.4
22
80
9
61
56
12
12
20
1.67
37633977--37634012
14
2.6
14
90
0
63
75
0
5
19
1.00
37642703--37642735
17
1.9
17
100
0
66
78
0
6
15
0.93
37644614--37644640
12
2.2
12
100
0
54
37
11
29
22
1.89
37648139--37648199
10
6.1
10
74
12
54
32
11
24
31
1.91
37648140--37648200
20
3.0
20
81
9
70
32
11
26
29
1.91
37648144--37648250
30
3.5
30
75
12
85
32
13
29
24
1.93
37649696--37649736
18
2.3
18
82
0
55
48
4
2
43
1.37
37655739--37655785
20
2.3
20
88
0
67
25
17
31
25
1.97
37656984--37657017
12
2.8
12
90
0
50
8
17
0
73
1.08
37656965--37657011
18
2.9
16
84
12
60
6
21
0
72
1.07
37659977--37660023
20
2.3
20
88
0
67
25
17
31
25
1.97
37674280--37674326
20
2.3
20
88
0
67
25
17
31
25
1.97
37675521--37675554
12
2.8
12
90
0
50
8
17
0
73
1.08
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37675502--37675548
18
2.9
16
84
12
60
6
21
0
72
1.07
37683957--37684029
29
2.5
29
95
0
128
45
13
9
31
1.76
37687604--37687663
22
2.7
22
78
0
66
26
33
3
36
1.73
37690811--37690852
14
2.9
14
85
3
57
73
2
21
2
1.06
37694424--37694470
20
2.3
20
78
7
51
29
29
14
25
1.95
37703255--37703295
17
2.5
17
88
4
57
9
9
2
78
1.06
37717902--37717927
13
2.0
13
100
0
52
23
7
23
46
1.78
37719529--37719569
21
2.0
21
95
0
73
29
34
2
34
1.71
37721806--37721912
41
2.6
41
94
1
180
29
18
17
33
1.94
37727997--37728047
17
3.0
17
88
0
75
54
9
11
23
1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226