Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 ID=Chr09-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  70713020

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  204  of  226  ( 27023 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64514432--64514488
27
2.1
27
86
0
78
38
10
21
29
1.87
64517698--64517738
6
6.8
6
88
0
64
39
0
9
51
1.35
64517692--64517739
12
3.8
12
94
5
78
39
0
10
50
1.37
64517696--64517739
2
22.0
2
80
0
52
40
0
9
50
1.34
64518461--64518616
69
2.2
70
84
6
199
32
10
15
41
1.82
64524549--64524954
41
9.9
41
87
2
573
18
24
29
27
1.98
64525594--64525655
7
8.9
7
80
7
63
14
1
50
33
1.53
64525591--64525689
7
14.0
7
79
12
60
17
2
44
36
1.60
64525807--64525868
21
2.9
21
77
13
65
24
0
37
38
1.56
64526415--64526472
21
2.7
21
79
12
57
32
0
32
34
1.58
64535238--64535280
22
2.0
22
95
0
77
41
27
20
9
1.83
64538405--64538454
25
2.0
25
100
0
100
24
16
20
40
1.91
64538935--64538997
18
3.3
19
84
8
76
31
0
4
63
1.15
64542590--64542638
19
2.5
19
80
3
53
40
0
12
46
1.41
64547079--64547139
32
1.9
32
83
12
81
49
8
1
40
1.42
64552866--64552906
3
13.7
3
100
0
82
34
0
0
65
0.93
64553210--64553253
18
2.4
18
88
0
61
65
2
2
29
1.16
64553203--64553257
10
6.1
9
74
16
51
67
1
1
29
1.11
64557147--64557217
35
2.0
35
100
0
142
32
19
11
36
1.87
64557268--64557397
40
3.3
40
91
1
208
33
18
27
20
1.96
64558979--64559302
42
7.6
42
88
3
418
32
21
22
23
1.98
64569054--64569092
2
19.5
2
100
0
78
48
0
0
51
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64569674--64569777
7
14.3
7
71
7
64
30
43
0
25
1.61
64569701--64569780
29
2.8
28
79
11
81
30
43
1
25
1.62
64570759--64570878
42
2.9
42
76
6
127
35
21
16
25
1.94
64573737--64573780
21
2.1
21
84
16
56
52
4
2
40
1.34
64575020--64575304
126
2.3
126
89
1
437
28
20
17
32
1.96
64575364--64575393
7
4.3
7
100
0
60
46
40
0
13
1.43
64575329--64575759
95
4.5
95
87
5
543
38
18
2
40
1.63
64575329--64575757
189
2.2
193
85
6
577
37
18
2
41
1.63
64576058--64576089
11
2.9
11
95
0
55
28
31
0
40
1.57
64576052--64576096
22
2.0
22
83
8
56
26
31
2
40
1.68
64579750--64580036
126
2.3
125
87
0
412
28
19
17
34
1.94
64580073--64580561
97
5.1
96
88
4
650
39
18
2
39
1.65
64584800--64584921
40
3.1
39
80
4
122
35
20
20
23
1.96
64584974--64585087
40
2.8
40
84
6
149
28
22
20
28
1.98
64585638--64585674
15
2.5
15
95
0
65
16
10
18
54
1.71
64587304--64587346
3
14.3
3
100
0
86
32
0
0
67
0.91
64589004--64589057
18
3.0
18
97
0
99
16
24
11
48
1.79
64590336--64590395
18
3.4
18
64
13
52
43
6
10
40
1.64
64590589--64590720
43
3.0
44
85
6
180
21
18
30
30
1.97
64599906--64600019
50
2.3
50
82
0
147
26
25
28
20
1.99
64605709--64605942
50
4.6
50
79
4
202
26
20
29
23
1.99
64611031--64611093
22
3.0
21
84
11
76
36
7
17
38
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64611044--64611101
22
2.7
23
81
7
68
37
5
17
39
1.72
64611294--64611338
23
2.0
23
81
0
54
22
0
15
62
1.33
64611709--64611743
18
1.9
18
88
0
52
34
28
17
20
1.95
64611837--64611885
20
2.5
20
82
0
53
69
10
16
4
1.32
64612900--64612950
25
2.0
25
81
7
59
35
1
3
58
1.28
64616957--64617463
44
11.8
44
84
6
646
26
16
26
30
1.97
64617128--64617463
121
2.7
122
85
7
401
25
16
26
31
1.96
64617084--64617415
165
2.0
165
88
2
497
25
17
25
31
1.97
64617250--64617466
87
2.5
87
87
1
310
26
14
27
31
1.95
64617445--64617835
89
4.4
88
81
3
354
29
18
25
26
1.98
64617559--64617688
44
2.9
45
69
15
124
27
19
26
26
1.99
64617782--64618176
131
3.0
130
87
4
555
28
19
25
26
1.99
64617784--64618119
44
7.7
44
67
11
161
28
19
24
27
1.99
64618618--64618671
19
2.8
19
94
0
99
37
9
16
37
1.81
64618618--64618694
19
3.7
22
84
10
76
36
7
16
38
1.78
64618898--64618942
23
2.0
23
81
0
54
22
0
15
62
1.33
64626931--64626980
21
2.4
20
93
6
82
26
14
10
50
1.73
64631209--64631265
29
1.9
30
82
10
73
77
3
10
8
1.11
64631383--64631412
12
2.6
11
90
10
51
80
0
20
0
0.72
64635525--64635562
20
1.9
20
88
0
58
71
5
2
21
1.19
64644925--64644975
26
1.9
26
88
11
77
56
11
9
21
1.63
64645069--64645100
15
2.0
17
88
11
50
62
9
0
28
1.26
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64645154--64645205
25
2.0
26
82
10
63
46
9
3
40
1.55
64645264--64645302
18
2.0
20
85
9
55
48
0
12
38
1.42
64646989--64647051
28
2.2
28
100
0
126
42
15
0
41
1.47
64646989--64647059
28
2.5
28
93
4
108
45
15
0
39
1.46
64649661--64649702
20
2.1
20
82
8
50
45
0
7
47
1.30
64652179--64652434
129
2.0
129
99
0
503
41
8
8
41
1.67
64655885--64655928
23
1.9
22
82
17
54
36
25
0
38
1.56
64655973--64656060
45
2.0
45
90
4
142
32
23
17
26
1.96
64656062--64656202
50
2.8
51
78
13
166
29
26
19
24
1.98
64660632--64660675
23
1.9
22
82
17
54
36
25
0
38
1.56
64660819--64661005
51
3.7
50
79
5
207
33
27
14
24
1.95
64660817--64661001
101
1.8
101
87
5
275
33
27
15
23
1.95
64662978--64664801
912
2.0
912
99
0
3576
31
15
12
39
1.85
64667910--64668126
71
3.1
71
64
21
168
38
9
5
47
1.59
64667801--64668223
138
3.1
137
90
3
679
40
8
5
45
1.57
64668284--64668317
17
2.0
17
94
0
59
55
5
0
38
1.24
64693091--64693140
23
2.2
23
85
0
64
50
20
12
18
1.78
64697411--64697556
40
3.7
39
84
3
193
32
23
14
29
1.94
64698000--64698035
18
1.9
19
88
5
56
44
2
19
33
1.65
64698873--64698913
22
1.9
21
90
5
64
36
0
7
56
1.27
64698860--64698920
22
2.9
21
75
7
61
39
1
8
50
1.42
64700573--64700605
17
2.0
16
94
5
57
36
0
3
60
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64704629--64704655
2
13.5
2
100
0
54
51
0
0
48
1.00
64708555--64708599
3
15.0
3
100
0
90
33
0
0
66
0.92
64710802--64710925
25
5.0
25
62
0
68
20
12
26
39
1.89
64710804--64711104
50
6.0
50
80
2
300
22
15
26
35
1.94
64710805--64711095
100
2.9
100
81
2
332
22
15
25
35
1.94
64710805--64711078
150
1.8
150
84
1
370
22
15
26
35
1.94
64712533--64712567
14
2.5
14
90
9
54
65
0
17
17
1.27
64714277--64714321
20
2.2
21
88
4
65
51
11
13
24
1.73
64718821--64718850
10
3.1
10
95
4
53
36
0
10
53
1.35
64719054--64719131
37
2.1
37
82
0
93
16
14
26
42
1.86
64732959--64733082
57
2.2
58
83
1
160
44
6
20
28
1.76
64733546--64733581
17
2.0
19
89
10
58
11
25
0
63
1.27
64734345--64734435
38
2.4
38
78
7
112
31
14
16
37
1.89
64736129--64736166
19
2.0
19
94
0
67
55
5
5
34
1.45
64736985--64737019
17
2.1
17
88
0
52
14
8
2
74
1.17
64745856--64745965
51
2.1
52
86
1
150
42
7
21
28
1.79
64766627--64766675
18
2.5
20
80
12
57
69
6
0
24
1.11
64766865--64766921
20
3.0
19
82
12
64
77
10
7
5
1.12
64766873--64766908
17
2.1
17
89
0
54
77
8
8
5
1.11
64770660--64770722
33
1.9
32
87
9
92
28
19
25
26
1.98
64773003--64773199
98
2.0
98
93
2
333
36
23
10
28
1.89
64773907--64774002
25
3.6
25
73
15
79
60
5
4
30
1.37
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64774149--64774200
3
17.7
3
88
4
79
67
0
0
32
0.91
64775334--64775756
132
3.2
132
95
0
738
28
23
19
28
1.98
64775302--64775647
44
7.9
44
64
13
129
29
22
18
29
1.97
64777474--64777511
7
5.7
7
81
12
53
2
0
10
86
0.66
64777474--64777519
12
3.5
13
85
8
58
2
2
10
84
0.79
64777472--64777517
19
2.4
18
86
10
65
2
2
8
86
0.72
64781048--64781138
45
2.0
45
97
0
173
42
15
12
29
1.83
64781222--64781418
98
2.0
98
93
2
333
37
24
10
28
1.88
64782132--64782227
25
3.6
25
73
15
79
60
5
4
30
1.37
64782374--64782440
3
22.7
3
90
3
109
67
0
0
32
0.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226