Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 ID=Chr09-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  70713020

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  104  of  226  ( 27023 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35943196--35943233
5
7.8
5
94
5
69
57
0
0
42
0.98
35945677--35945774
49
2.0
49
84
4
126
25
16
11
46
1.80
35946632--35946672
19
2.0
22
86
13
61
21
9
0
68
1.18
35949281--35949318
9
4.1
9
96
3
67
2
21
0
76
0.91
35964611--35964787
50
3.4
49
80
9
142
27
21
28
23
1.99
35964664--35964850
50
3.8
48
77
7
153
28
22
27
21
1.99
35964622--35964808
100
1.8
102
81
6
234
26
20
29
23
1.99
35975839--35975898
25
2.3
26
80
16
70
33
20
10
36
1.86
35979866--35979910
10
4.3
11
81
15
51
55
4
0
40
1.20
35983667--35983700
16
2.2
15
89
5
50
55
2
0
41
1.15
35983766--35983825
30
2.0
30
87
3
86
45
11
11
31
1.77
36018849--36019474
44
13.8
44
75
9
488
34
19
19
27
1.95
36018849--36019474
89
6.9
88
76
9
499
34
19
19
27
1.95
36018849--36019471
134
4.6
133
81
6
601
34
19
19
27
1.95
36019390--36019507
44
2.7
44
89
5
168
31
18
20
29
1.96
36020178--36020271
47
2.0
47
87
0
134
24
28
20
26
1.99
36028174--36028206
5
6.6
5
100
0
66
21
0
18
60
1.36
36029442--36029491
21
2.4
21
86
3
75
56
0
0
44
0.99
36029442--36029529
19
4.4
20
77
11
65
57
2
2
37
1.23
36029483--36029530
9
5.1
9
75
9
51
60
4
4
31
1.35
36029716--36029786
11
6.1
11
71
18
54
30
2
1
64
1.16
36032360--36032447
44
2.0
44
100
0
176
31
11
15
40
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36036528--36036565
19
2.0
19
100
0
76
36
10
10
42
1.74
36038123--36038195
25
3.0
25
90
6
105
31
19
27
21
1.97
36038131--36038207
25
3.0
26
87
9
106
29
19
28
22
1.98
36044107--36044172
24
2.7
24
83
6
80
25
22
22
28
1.99
36044111--36044198
25
3.6
24
79
13
90
28
23
22
25
1.99
36049758--36049802
7
6.4
7
86
0
54
37
37
6
17
1.76
36064259--36064308
25
2.0
25
100
0
100
60
12
0
28
1.32
36067058--36067097
21
1.9
21
89
0
62
52
12
10
25
1.70
36068129--36068166
19
2.0
20
94
5
69
18
34
10
36
1.85
36070924--36071120
36
5.5
36
82
1
252
37
27
14
20
1.91
36072003--36072044
21
2.0
21
81
9
50
26
7
4
61
1.42
36079919--36080145
40
5.7
40
87
2
305
20
29
16
33
1.95
36079938--36080084
20
7.3
20
62
9
66
21
32
17
28
1.96
36079965--36080102
20
6.9
20
62
3
62
19
29
18
32
1.95
36090471--36090766
75
3.9
74
81
4
306
38
19
18
22
1.93
36115434--36115478
23
1.9
24
86
4
65
26
51
2
20
1.59
36118610--36118795
51
3.7
49
75
8
171
24
17
27
30
1.97
36118809--36118895
45
1.9
45
90
0
138
24
14
25
35
1.94
36125322--36125392
29
2.4
30
78
19
87
30
1
2
64
1.16
36126986--36127021
2
18.0
2
100
0
72
50
0
0
50
1.00
36127611--36127657
24
2.0
24
83
8
60
34
6
14
44
1.71
36128088--36128129
16
2.6
16
92
3
66
28
0
2
69
1.01
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36128088--36128139
16
3.1
16
83
10
52
32
3
1
61
1.25
36130238--36130274
16
2.3
16
95
0
65
32
2
13
51
1.55
36132488--36132575
24
3.7
24
71
13
65
34
21
26
18
1.96
36138874--36138898
9
2.8
9
100
0
50
60
0
8
32
1.26
36139320--36139439
48
2.5
49
84
4
145
40
3
3
53
1.34
36149700--36149770
24
2.9
24
73
10
63
19
25
21
33
1.97
36153307--36153349
20
2.2
20
86
0
59
67
2
4
25
1.22
36153298--36153368
20
3.7
20
70
12
58
61
2
7
28
1.36
36153484--36153527
21
2.2
20
87
4
61
70
4
4
20
1.23
36153584--36153693
10
11.7
10
69
14
56
32
2
2
61
1.24
36153586--36153692
9
11.6
9
73
16
76
32
2
2
61
1.25
36153587--36153653
28
2.4
27
82
7
73
31
1
4
62
1.24
36153581--36153692
45
2.4
47
83
7
156
33
3
2
60
1.28
36153548--36153693
18
7.7
19
70
11
77
30
4
4
60
1.36
36153699--36153745
20
2.3
20
79
13
60
44
2
0
53
1.12
36154675--36154774
51
2.0
51
88
4
148
32
22
2
44
1.64
36155891--36155921
7
4.4
7
95
0
53
25
0
12
61
1.32
36156565--36156604
18
2.2
18
95
0
71
22
30
5
42
1.75
36157037--36157214
70
2.5
70
98
1
340
38
0
13
47
1.43
36157027--36157214
25
7.9
25
66
17
107
37
0
14
47
1.44
36157212--36157482
23
11.8
23
90
2
438
43
22
7
26
1.79
36160644--36161007
124
2.9
123
90
3
561
33
21
15
29
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36166860--36166902
20
2.2
20
91
0
68
41
13
20
23
1.88
36171225--36171296
28
2.6
28
84
0
90
31
12
25
30
1.92
36174090--36174161
29
2.5
30
75
16
73
33
2
6
56
1.40
36174139--36174190
22
2.3
23
78
15
65
26
5
0
67
1.13
36175214--36175243
6
5.0
6
100
0
60
50
0
0
50
1.00
36175741--36175772
2
15.5
2
93
6
55
46
0
3
50
1.17
36176455--36176508
22
2.5
22
80
11
58
29
0
9
61
1.27
36177234--36177269
16
2.2
16
95
0
63
25
0
33
41
1.55
36178029--36178062
10
3.6
10
84
15
54
8
0
0
91
0.43
36178652--36178693
22
1.9
22
85
9
59
30
2
0
66
1.04
36179748--36179782
18
2.0
17
88
5
52
54
0
0
45
0.99
36179642--36179950
156
2.0
157
95
0
557
44
2
5
47
1.40
36180003--36180174
15
11.6
15
65
23
62
50
4
1
43
1.31
36179887--36180292
120
3.4
120
95
1
717
49
4
2
42
1.39
36180340--36180387
26
1.9
25
84
16
64
52
2
0
45
1.12
36186376--36186466
42
2.2
42
84
7
114
32
3
0
63
1.10
36187868--36187954
43
2.0
43
82
4
104
19
17
24
39
1.92
36189590--36189813
104
2.2
104
85
4
317
21
29
22
26
1.99
36191776--36191820
15
3.0
15
80
0
54
44
11
35
8
1.71
36192549--36192787
104
2.3
104
86
1
318
22
31
22
23
1.98
36195817--36195862
16
2.9
16
84
9
58
19
2
6
71
1.18
36195806--36195862
20
2.8
20
92
5
89
19
1
8
70
1.23
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36195817--36195858
12
3.9
11
78
15
52
19
2
7
71
1.20
36209296--36209598
143
2.1
143
90
1
473
29
20
21
28
1.98
36209580--36209697
44
2.7
44
76
9
132
28
21
21
28
1.98
36211565--36211621
20
2.8
19
86
5
69
19
1
12
66
1.32
36212389--36212427
19
2.2
19
86
9
55
41
2
0
56
1.13
36213184--36213247
29
2.2
30
86
8
87
57
0
1
40
1.08
36213191--36213239
19
2.5
20
80
9
57
53
0
2
44
1.12
36216365--36216405
21
1.9
22
85
14
59
60
2
0
36
1.10
36218301--36218392
9
9.4
10
70
19
61
63
0
2
34
1.07
36218306--36218416
11
10.6
11
72
20
62
58
0
3
37
1.16
36218283--36218425
42
3.5
40
85
6
189
60
0
2
35
1.16
36218316--36218391
17
4.1
18
75
12
73
61
0
1
36
1.04
36218283--36218425
39
3.5
39
83
6
178
60
0
2
35
1.16
36226382--36227170
114
6.9
114
88
3
1174
31
16
25
25
1.96
36226384--36227140
230
3.3
227
86
4
1038
32
16
25
26
1.96
36227930--36227978
25
1.9
26
83
4
64
22
6
24
46
1.74
36229895--36229945
24
2.1
24
96
0
93
21
7
27
43
1.80
36231811--36232222
9
45.8
9
76
7
372
49
17
2
31
1.60
36231883--36231931
23
2.2
22
92
3
80
51
18
0
30
1.47
36231811--36232222
91
4.6
91
92
3
665
49
17
2
31
1.60
36237727--36237795
21
3.3
21
89
4
104
36
18
42
2
1.66
36238294--36238606
42
7.4
42
87
4
366
26
22
20
30
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36238292--36238606
129
2.5
126
83
10
401
26
22
20
30
1.98
36238707--36238859
42
3.6
42
96
1
279
22
19
20
37
1.95
36243809--36243859
21
2.4
21
93
0
93
17
1
47
33
1.59
36244171--36244666
251
2.0
251
85
3
685
30
15
20
33
1.94
36245702--36245748
22
2.1
22
96
0
85
38
4
12
44
1.62
36246855--36246895
19
2.2
19
95
0
73
48
9
0
41
1.36
36246961--36247011
25
2.0
25
96
0
93
45
15
1
37
1.58
36247080--36247123
19
2.3
19
96
0
79
47
11
0
40
1.39
36247159--36247192
17
1.9
18
88
5
52
38
5
0
55
1.24
36247189--36247239
25
2.0
25
96
0
93
45
15
1
37
1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226