Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 ID=Chr09-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  70713020

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  110  of  226  ( 27023 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37748973--37749020
20
2.4
20
85
0
60
39
12
22
25
1.89
37758739--37758777
11
3.6
11
89
6
53
76
2
2
17
1.01
37761293--37761357
22
2.9
22
79
2
67
26
32
4
36
1.77
37768290--37768354
22
2.9
22
90
2
94
33
33
4
27
1.78
37771571--37771637
28
2.4
28
87
5
91
52
11
7
28
1.65
37773160--37773211
18
2.9
18
88
0
68
67
3
15
13
1.37
37773160--37773218
18
3.3
18
83
4
66
67
5
15
11
1.38
37786753--37786800
20
2.4
20
82
0
60
25
39
14
20
1.91
37791244--37791305
21
2.9
21
85
2
79
27
3
35
33
1.73
37809805--37809905
52
1.9
52
89
0
157
33
22
16
26
1.96
37811519--37811556
14
2.6
15
95
4
69
15
10
2
71
1.25
37811519--37811584
14
4.8
13
75
20
55
13
7
4
74
1.20
37811523--37811596
27
2.7
27
74
14
71
12
9
5
72
1.25
37811895--37811957
21
3.0
21
88
2
90
30
3
33
33
1.74
37813090--37813148
30
2.0
30
83
6
75
28
15
25
30
1.96
37818835--37818888
14
3.9
14
92
4
92
24
11
0
64
1.25
37818927--37818968
11
3.7
11
93
3
66
11
2
9
76
1.12
37818924--37818972
12
4.2
12
89
5
64
14
4
14
67
1.37
37822373--37822480
41
2.6
40
89
2
162
35
16
17
30
1.92
37822408--37822473
21
3.1
22
63
12
57
34
15
16
33
1.90
37825068--37825093
11
2.4
11
100
0
52
65
7
0
26
1.20
37828815--37829060
122
2.0
122
99
0
483
27
20
22
30
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37831325--37831355
14
2.2
14
94
0
53
0
22
3
74
0.96
37833430--37833463
13
2.6
13
100
0
68
17
5
0
76
0.98
37836832--37836881
6
8.3
6
81
0
55
6
22
0
72
1.07
37843053--37843295
50
4.8
50
88
2
335
26
22
30
20
1.98
37847904--37847938
4
8.8
4
100
0
70
22
0
0
77
0.78
37852827--37852872
20
2.3
20
85
7
58
26
17
28
28
1.98
37854323--37854384
10
5.9
10
74
10
52
33
32
3
30
1.74
37854323--37854385
21
3.0
21
88
2
90
33
33
3
30
1.74
37854802--37854872
27
2.6
27
80
10
74
77
1
16
4
1.00
37854802--37854866
13
4.8
14
80
15
66
78
1
16
3
0.96
37857033--37857100
21
3.1
22
87
4
93
27
33
2
35
1.72
37857279--37857309
4
7.8
4
100
0
62
22
0
0
77
0.77
37863062--37863099
20
1.9
19
89
5
58
23
26
15
34
1.95
37864810--37864855
14
3.3
14
75
0
56
73
4
2
19
1.10
37864902--37864973
30
2.4
30
88
6
101
75
2
12
9
1.16
37867344--37867381
20
1.9
19
89
5
58
23
26
15
34
1.95
37870153--37870207
15
3.8
14
80
7
65
74
1
21
1
1.01
37883615--37883654
18
2.2
18
86
4
53
12
27
0
60
1.33
37884675--37884705
13
2.4
13
94
0
53
22
9
0
67
1.19
37884763--37884809
12
3.6
13
80
11
60
19
4
4
72
1.18
37884762--37884809
14
3.6
14
77
11
55
18
4
4
72
1.17
37886726--37886792
22
3.0
22
93
0
107
25
25
14
34
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37888371--37888442
16
4.3
17
72
13
60
12
25
4
58
1.52
37888363--37888432
33
2.1
33
86
5
97
12
25
5
55
1.59
37889656--37889709
19
2.9
18
91
5
81
11
5
3
79
1.02
37889665--37889709
9
4.9
9
89
5
72
11
6
2
80
0.99
37889655--37889712
10
6.0
10
87
4
75
12
6
3
77
1.09
37890852--37890906
22
2.5
22
75
0
56
38
5
29
27
1.79
37893337--37893374
20
1.9
19
94
5
67
31
15
28
23
1.96
37894838--37894882
20
2.2
20
84
4
54
8
26
0
64
1.23
37895738--37895805
29
2.3
30
87
7
104
11
10
2
75
1.16
37895844--37895896
13
4.0
13
85
9
72
22
7
1
67
1.25
37898688--37898725
20
1.9
19
94
5
67
31
15
28
23
1.96
37904777--37904823
2
23.5
2
95
0
85
0
46
0
53
1.00
37911182--37911228
20
2.3
20
85
0
58
25
19
29
25
1.98
37911797--37911995
29
6.9
29
82
0
227
18
27
15
38
1.91
37915224--37915250
9
3.0
9
100
0
54
11
0
0
88
0.50
37916367--37916467
52
1.9
52
95
0
184
26
18
21
32
1.97
37919857--37919903
20
2.3
20
85
0
58
25
29
19
25
1.98
37936912--37936968
30
1.9
30
96
0
105
45
10
7
36
1.66
37942189--37942231
16
2.7
16
92
0
68
11
9
2
76
1.10
37942193--37942255
13
4.6
13
78
13
65
12
7
1
77
1.05
37943435--37943507
29
2.5
29
93
4
121
46
12
9
31
1.74
37945527--37945569
11
3.6
12
90
9
70
16
4
6
72
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37950306--37950347
21
2.0
21
85
0
57
7
7
7
78
1.09
37950415--37950445
10
3.0
10
90
9
53
9
0
9
80
0.90
37950417--37950445
11
2.6
11
100
0
58
6
0
6
86
0.72
37952851--37953067
108
2.0
108
99
0
425
27
19
16
36
1.93
37953095--37953134
19
2.1
19
90
0
62
70
0
20
10
1.16
37954484--37954584
52
1.9
52
85
0
139
28
16
20
33
1.95
37956884--37956962
41
2.0
40
92
2
131
17
26
29
26
1.98
37958037--37958109
29
2.5
29
93
4
121
46
12
9
31
1.74
37965621--37965683
31
2.0
31
93
6
110
47
14
6
31
1.69
37968759--37968812
21
2.7
20
88
11
83
0
14
12
72
1.13
37968773--37968815
11
4.0
11
79
14
54
0
11
11
76
1.02
37973643--37973699
20
2.8
20
83
2
69
29
15
28
26
1.96
37975563--37975647
21
3.9
22
77
10
86
11
24
2
61
1.42
37975661--37975707
15
3.1
15
84
9
60
12
17
0
70
1.17
37976754--37976805
13
3.7
13
78
14
50
3
19
1
75
1.06
37976761--37976803
15
2.6
17
85
10
63
4
20
2
72
1.14
37976750--37976803
15
3.7
15
78
14
51
3
20
1
74
1.07
37976747--37976826
43
1.9
42
85
7
110
6
17
2
73
1.15
37979576--37979640
22
2.9
22
79
2
67
36
4
32
26
1.77
37982219--37982343
42
3.0
42
100
0
250
38
9
19
32
1.84
37984556--37984602
20
2.3
20
85
0
58
25
29
19
25
1.98
37988853--37988885
13
2.6
13
90
4
50
0
18
0
81
0.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37988930--37988978
12
4.4
11
82
12
64
16
2
8
73
1.16
37989308--37989370
23
2.7
23
80
9
74
26
6
28
38
1.81
37992533--37992559
6
4.5
6
100
0
54
14
0
14
70
1.17
37997605--37997677
29
2.5
29
90
0
119
30
9
13
46
1.75
37999313--37999366
26
2.0
27
89
3
83
75
3
9
11
1.15
38000172--38000217
20
2.2
20
84
3
56
65
0
26
8
1.21
38002355--38002507
22
7.0
22
90
0
225
32
14
26
26
1.94
38010904--38010957
14
4.0
14
90
7
85
24
11
0
64
1.25
38010996--38011037
11
3.7
11
93
3
66
11
2
9
76
1.12
38010993--38011041
12
4.2
12
89
5
64
14
4
14
67
1.37
38015349--38015394
19
2.5
19
86
10
60
4
17
2
76
1.06
38017406--38017456
13
3.7
13
82
12
57
21
9
0
68
1.18
38017406--38017459
14
3.9
14
88
9
83
24
11
0
64
1.25
38017499--38017541
12
3.6
12
87
0
59
13
4
6
74
1.19
38021501--38021545
20
2.2
21
77
18
51
35
15
15
33
1.89
38029111--38029175
20
3.3
19
73
16
51
38
16
21
23
1.93
38030175--38030224
18
3.0
17
81
18
61
18
16
2
64
1.39
38030174--38030224
16
3.0
17
78
18
61
19
15
1
62
1.41
38034494--38034542
25
1.9
25
87
4
71
30
30
22
16
1.96
38035605--38035637
11
2.8
12
90
9
50
36
15
9
39
1.79
38035605--38035639
12
2.8
13
87
12
56
34
17
8
40
1.80
38042326--38042372
20
2.3
20
85
7
60
27
29
17
25
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38042316--38042375
10
5.9
10
75
9
50
26
28
15
30
1.96
38044537--38044605
31
2.4
30
83
9
90
13
18
0
68
1.21
38045542--38045581
15
2.6
16
84
8
55
15
7
12
65
1.47
38064172--38064215
18
2.4
19
81
11
56
72
4
15
6
1.22
38068978--38069004
14
1.9
14
100
0
54
29
14
22
33
1.94
38070833--38070879
20
2.3
20
85
7
60
27
29
17
25
1.97
38070823--38070882
10
5.9
10
75
9
50
26
28
15
30
1.96
38083833--38083873
17
2.4
18
80
8
50
14
24
4
56
1.58
38086126--38086188
16
4.2
16
75
17
73
11
9
1
77
1.05
38086123--38086200
29
2.8
27
92
3
120
12
10
1
75
1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226