Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 ID=Chr09-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  70713020

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  211  of  226  ( 27023 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66441482--66441515
11
3.0
11
86
4
50
50
11
2
35
1.54
66443890--66443916
2
13.5
2
100
0
54
51
0
0
48
1.00
66446678--66446708
2
15.5
2
100
0
62
51
0
0
48
1.00
66450702--66450755
23
2.4
23
84
9
67
57
0
1
40
1.09
66450712--66450758
23
2.1
23
88
4
69
55
0
2
42
1.12
66450731--66450813
30
2.5
32
78
17
82
54
3
1
40
1.26
66450806--66450842
17
2.1
18
85
14
51
56
2
0
40
1.13
66455947--66456057
46
2.4
46
83
3
125
41
18
9
31
1.81
66467964--66468015
26
2.0
26
100
0
104
26
26
7
38
1.83
66477838--66477864
6
4.5
6
100
0
54
70
0
0
29
0.88
66477844--66477912
25
2.8
24
79
12
77
65
2
4
27
1.26
66480527--66480595
30
2.3
30
80
10
77
46
14
23
15
1.83
66484387--66484432
21
2.2
21
84
7
58
26
2
21
50
1.60
66486724--66486940
40
5.4
40
94
0
353
30
20
20
28
1.98
66489173--66489422
52
4.8
52
97
0
473
33
15
23
28
1.95
66489403--66489511
37
3.0
37
94
2
186
37
16
21
24
1.93
66496698--66496749
22
2.3
22
84
15
63
50
23
21
5
1.70
66497094--66497122
2
14.5
2
100
0
58
48
0
0
51
1.00
66497447--66497585
46
3.0
46
95
2
244
36
17
9
35
1.83
66497539--66497669
64
2.1
62
97
2
244
36
18
9
35
1.84
66499563--66499633
30
2.3
31
82
4
81
53
5
0
40
1.24
66499614--66499808
94
2.1
93
89
0
291
43
8
6
42
1.59
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66501391--66501424
9
3.8
9
85
14
52
79
0
0
20
0.73
66503361--66503550
100
1.9
99
79
6
213
55
3
10
31
1.48
66504616--66504659
22
2.0
22
82
8
54
4
18
6
70
1.27
66505227--66505854
100
6.3
100
93
0
959
22
22
24
31
1.99
66505272--66505854
50
11.6
50
69
7
331
22
22
24
30
1.99
66505830--66505879
25
2.0
25
84
0
64
24
20
20
36
1.95
66511341--66511538
52
3.8
52
97
0
369
33
14
23
28
1.94
66511519--66511627
37
3.0
37
94
2
186
37
16
21
24
1.93
66518815--66518866
22
2.3
22
84
15
63
50
23
21
5
1.70
66521997--66522067
30
2.3
31
83
9
83
53
4
0
42
1.20
66527617--66527655
20
2.0
20
94
0
69
17
10
25
46
1.80
66532262--66532300
20
2.0
20
94
0
69
17
10
25
46
1.80
66534942--66535002
25
2.5
24
76
5
59
40
1
3
54
1.27
66535242--66535324
19
4.3
18
73
19
62
32
0
4
62
1.16
66535339--66535378
17
2.4
17
86
0
62
30
2
5
62
1.29
66536010--66536108
47
2.1
47
100
0
198
37
11
8
43
1.70
66542787--66542840
21
2.6
21
85
2
74
72
5
3
18
1.20
66543164--66543191
13
2.2
13
100
0
56
21
28
21
28
1.99
66543175--66543244
21
3.2
21
74
18
79
15
20
25
38
1.92
66543515--66543658
34
4.3
33
73
14
116
31
13
13
41
1.83
66543724--66543891
49
3.4
49
82
0
192
30
19
15
35
1.92
66544617--66544676
30
2.0
31
90
3
95
20
38
0
41
1.52
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66551662--66551714
3
17.7
3
100
0
106
66
0
0
33
0.92
66551745--66551819
12
5.8
13
69
22
52
62
1
1
34
1.12
66555707--66555748
18
2.3
18
84
8
50
26
4
14
54
1.59
66556039--66556070
2
16.0
2
100
0
64
50
0
0
50
1.00
66556801--66556850
3
16.7
3
100
0
100
66
0
0
34
0.92
66557597--66557626
9
3.2
9
90
9
51
66
3
0
30
1.07
66557790--66557891
21
4.9
21
85
0
123
5
44
15
34
1.71
66563394--66563426
16
2.1
16
94
0
57
30
0
18
51
1.46
66563462--66564294
9
98.8
9
68
20
157
37
3
14
44
1.61
66563464--66563611
34
4.5
31
70
18
93
36
1
18
43
1.59
66563464--66563610
16
8.8
16
75
11
102
36
1
19
42
1.59
66563653--66564079
31
13.6
31
73
15
319
38
3
12
45
1.60
66563653--66564298
63
10.4
62
73
19
353
37
3
13
45
1.61
66563725--66563809
16
5.3
16
82
13
88
30
1
23
44
1.61
66563746--66563800
7
7.3
7
84
15
74
30
0
25
43
1.55
66563727--66563809
23
3.5
23
90
6
66
30
1
24
44
1.61
66563810--66564295
63
7.9
63
80
14
459
37
4
12
45
1.62
66563810--66563969
22
7.6
21
68
27
74
40
5
10
43
1.63
66563830--66563939
22
5.1
22
70
23
81
39
5
11
43
1.64
66564082--66564167
7
11.4
7
81
14
100
31
0
24
44
1.54
66564070--66564172
23
4.5
23
79
16
115
31
0
24
44
1.54
66564084--66564172
16
5.2
16
84
12
115
32
0
23
43
1.54
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66564160--66564281
34
3.7
34
80
6
160
39
4
10
45
1.61
66564152--66564294
34
4.5
31
76
11
146
39
4
12
44
1.62
66569143--66569424
41
6.9
40
75
8
208
34
24
24
15
1.95
66569244--66569422
83
2.2
82
86
3
252
36
26
23
13
1.92
66569480--66569578
40
2.5
40
80
6
112
20
28
22
29
1.98
66581776--66581881
17
5.7
19
66
18
64
43
9
6
40
1.63
66581833--66581868
17
2.2
17
95
5
65
50
11
2
36
1.53
66581850--66581890
22
2.0
20
85
9
55
46
7
4
41
1.53
66581902--66582093
17
10.5
17
67
15
82
43
9
15
31
1.79
66581902--66582092
73
2.6
72
82
6
206
43
9
15
31
1.79
66581902--66582093
18
10.5
18
67
17
94
43
9
15
31
1.79
66581902--66582064
36
4.5
35
73
16
118
43
9
14
33
1.77
66581952--66582093
17
7.8
19
69
18
88
44
9
14
32
1.76
66582556--66582605
5
10.2
5
79
12
59
0
18
2
80
0.82
66582705--66582746
17
2.3
18
80
12
50
0
21
23
54
1.44
66582714--66582762
20
2.5
19
77
9
55
0
20
12
67
1.22
66582919--66583006
6
13.8
6
80
15
70
0
27
0
72
0.85
66582954--66583006
3
18.3
3
81
14
67
0
33
0
66
0.92
66583107--66583137
11
2.8
11
95
0
53
0
22
0
77
0.77
66583538--66583636
29
3.4
29
75
9
94
44
6
17
32
1.73
66583538--66583669
59
2.2
59
85
7
171
43
6
16
33
1.75
66583555--66583666
29
3.9
29
75
9
104
43
7
17
31
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66589739--66589844
10
10.9
10
69
19
64
33
0
4
62
1.16
66589737--66589820
29
2.8
31
80
15
104
32
0
4
63
1.15
66589740--66589841
19
5.4
18
69
17
64
32
0
4
62
1.16
66589738--66589830
29
3.2
28
83
11
82
32
0
4
63
1.14
66590554--66590578
7
3.6
7
100
0
50
68
0
0
32
0.90
66591263--66592015
376
2.0
376
97
0
1427
39
26
11
22
1.88
66594711--66594743
2
16.5
2
100
0
66
48
0
0
51
1.00
66602258--66602540
129
2.2
129
92
0
458
31
22
17
28
1.97
66602387--66603061
175
3.9
174
92
1
1100
28
20
19
31
1.97
66602111--66602715
304
2.0
304
90
0
951
29
21
18
30
1.97
66602155--66603077
44
21.1
44
68
11
322
28
21
19
31
1.97
66603029--66603272
54
4.9
52
67
21
125
24
19
20
35
1.95
66602937--66603324
141
2.7
141
90
3
575
24
19
20
35
1.96
66603348--66603485
44
3.2
43
68
11
127
24
24
22
28
2.00
66603302--66603531
88
2.6
88
90
0
370
23
23
23
29
1.99
66603379--66603516
44
3.1
44
65
12
111
23
22
26
27
2.00
66604726--66604768
8
5.4
8
89
10
70
11
11
0
76
1.02
66604717--66604768
16
3.4
15
87
10
70
13
13
0
73
1.11
66605549--66605636
7
12.4
7
85
10
99
7
0
12
79
0.93
66605531--66605641
21
5.3
21
77
10
77
8
1
10
79
1.01
66605589--66605638
8
6.6
8
86
9
61
4
0
10
86
0.71
66605705--66605735
14
2.2
14
94
0
53
41
25
3
29
1.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66608130--66608181
19
2.7
20
82
5
63
46
11
17
25
1.81
66610722--66610753
3
10.7
3
100
0
64
65
0
0
34
0.93
66612017--66612058
18
2.3
18
84
8
50
23
7
14
54
1.64
66618180--66618227
17
2.9
15
80
14
51
60
4
0
35
1.16
66618228--66618257
16
1.9
16
93
6
53
43
6
6
43
1.57
66618415--66618462
18
2.7
18
81
9
62
37
16
4
41
1.68
66621611--66621673
31
2.0
31
81
6
74
71
3
6
19
1.21
66622875--66622980
29
3.6
29
78
7
115
43
3
16
35
1.67
66624016--66624091
34
2.2
34
86
4
100
31
13
14
40
1.84
66624029--66624158
34
3.8
33
75
12
104
30
14
14
40
1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226