Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 ID=Chr09-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  70713020

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  203  of  226  ( 27023 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64260155--64260215
26
2.4
25
81
5
68
47
14
6
31
1.70
64262127--64262193
31
2.2
31
97
0
125
17
17
2
61
1.47
64263139--64263186
22
2.3
21
85
7
62
12
20
22
43
1.86
64264155--64264216
31
2.0
31
100
0
124
41
16
9
32
1.80
64269755--64269786
13
2.5
13
89
0
55
0
12
15
71
1.14
64269769--64269832
30
2.2
29
83
10
78
0
7
12
79
0.92
64269756--64269814
13
4.4
14
74
19
54
0
8
13
77
0.97
64269782--64269832
9
5.6
9
75
11
50
0
5
11
82
0.83
64270347--64270408
31
2.0
31
96
0
115
41
17
9
30
1.82
64276251--64276282
2
16.0
2
100
0
64
50
0
0
50
1.00
64276429--64276468
2
19.5
2
94
5
71
47
2
0
50
1.14
64276775--64276808
2
17.0
2
100
0
68
50
0
0
50
1.00
64278878--64278962
22
3.8
23
78
6
59
27
15
20
37
1.92
64282736--64282793
25
2.4
24
80
11
64
63
1
25
8
1.32
64291328--64291576
50
4.8
50
86
3
309
21
29
22
26
1.99
64291671--64291702
13
2.5
13
94
0
55
56
12
0
31
1.37
64291914--64291971
30
1.9
30
89
0
89
31
24
3
41
1.71
64293398--64293430
17
1.9
17
93
0
57
57
9
12
21
1.62
64304765--64304830
17
3.9
17
72
7
53
42
15
6
36
1.71
64305460--64305499
18
2.2
18
90
0
62
40
15
12
32
1.84
64305469--64305512
18
2.4
18
80
0
52
45
18
6
29
1.75
64309103--64309182
42
1.9
42
87
5
117
27
23
18
30
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64309103--64309257
43
3.6
43
82
4
154
27
28
20
24
1.99
64311832--64311857
11
2.4
11
100
0
52
84
7
7
0
0.77
64313051--64313106
7
8.0
7
91
0
67
30
50
0
19
1.48
64313059--64313110
7
7.4
7
93
0
68
32
46
0
21
1.52
64313037--64313106
14
5.0
14
79
6
70
30
45
0
24
1.53
64313695--64313886
41
4.7
41
85
3
246
28
26
20
25
1.99
64313923--64314018
39
2.4
39
83
8
106
19
22
18
38
1.93
64316223--64316349
21
6.2
20
68
11
69
17
15
18
48
1.81
64316244--64316349
41
2.5
41
77
8
106
18
16
18
46
1.85
64316278--64316349
22
3.5
20
70
10
65
19
13
18
48
1.81
64319643--64319685
20
2.2
20
83
4
52
46
9
0
44
1.35
64332394--64332433
17
2.4
17
87
8
55
40
0
0
60
0.97
64332394--64332458
5
13.2
5
81
15
64
35
0
4
60
1.18
64333335--64333381
24
2.0
23
84
12
60
51
4
14
29
1.62
64334944--64334989
15
3.1
14
81
9
56
28
15
28
28
1.96
64336461--64336694
44
5.3
44
64
5
132
25
27
25
21
2.00
64336315--64336725
88
4.7
88
88
0
599
28
27
24
20
1.99
64336725--64336846
44
2.8
43
82
5
147
27
18
24
29
1.98
64336916--64337014
50
2.0
50
85
0
135
27
23
25
24
2.00
64337210--64337672
44
10.7
44
70
13
244
30
21
22
26
1.98
64337341--64337459
45
2.7
44
76
16
120
26
21
26
26
1.99
64337195--64337672
217
2.2
218
87
1
683
30
20
22
26
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64338183--64338255
19
3.8
19
92
0
128
35
9
17
36
1.83
64338714--64338754
3
13.7
3
90
10
66
31
0
0
68
0.90
64338963--64339001
2
19.5
2
94
0
69
48
0
0
51
1.00
64344226--64344253
14
2.0
14
100
0
56
78
7
7
7
1.09
64344976--64345113
42
3.4
41
82
3
143
42
18
23
15
1.88
64345146--64345184
19
2.1
19
100
0
78
10
20
15
53
1.70
64347526--64347653
39
3.2
39
82
4
114
33
19
24
22
1.97
64347543--64347657
39
2.9
39
84
2
151
34
19
21
24
1.96
64347716--64347915
41
4.9
41
73
11
137
24
21
25
29
1.99
64348255--64348459
14
13.9
14
70
18
105
20
1
30
47
1.59
64348255--64348373
7
16.7
7
74
11
82
19
1
29
49
1.58
64348318--64348371
29
1.9
27
88
7
81
16
0
31
51
1.45
64348409--64348460
7
7.3
7
85
8
52
19
0
34
46
1.50
64348409--64348460
13
3.6
14
77
12
52
19
0
34
46
1.50
64348505--64348672
7
23.7
7
72
7
52
23
1
30
44
1.64
64348505--64348558
14
3.9
14
85
0
72
22
0
31
46
1.52
64348590--64348665
35
2.1
36
83
7
93
22
0
35
42
1.54
64348605--64348654
20
2.4
21
86
3
75
22
0
42
36
1.54
64353078--64353193
43
2.7
43
87
2
144
25
17
31
26
1.97
64353442--64353508
35
1.9
35
90
0
107
46
8
5
38
1.60
64353519--64353680
56
3.1
56
86
10
211
44
16
2
37
1.61
64353529--64353686
9
17.6
9
72
13
78
46
15
1
36
1.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64353583--64353686
45
2.4
44
95
3
183
49
16
0
34
1.46
64353583--64353686
43
2.6
40
86
10
126
49
16
0
34
1.46
64359690--64359848
43
3.7
43
79
5
124
27
21
27
24
1.99
64359729--64359853
43
2.9
43
82
4
153
26
19
28
25
1.98
64368427--64368464
16
2.2
18
86
9
53
28
21
0
50
1.49
64373073--64373111
19
2.1
19
85
9
53
35
12
10
41
1.77
64380914--64381263
91
3.8
90
81
7
384
35
25
14
25
1.93
64380914--64381263
183
1.9
183
82
3
436
35
25
14
25
1.93
64387077--64387208
69
1.9
71
84
9
182
23
7
26
42
1.81
64391678--64391886
92
2.3
91
85
5
269
45
3
4
45
1.41
64391940--64392150
66
3.4
63
69
21
192
41
3
6
48
1.44
64391909--64392194
120
2.4
120
94
3
488
42
2
4
49
1.38
64392027--64392078
15
3.6
15
80
12
56
44
0
1
53
1.11
64392156--64392197
15
2.7
16
82
14
52
45
0
2
52
1.13
64392147--64392188
15
2.9
15
82
10
52
47
0
0
52
1.00
64392356--64392409
22
2.6
21
91
8
76
46
3
5
44
1.44
64392363--64392409
22
2.1
22
100
0
94
46
4
4
44
1.42
64393184--64393242
16
3.6
16
73
20
50
8
11
1
77
1.05
64393157--64393197
6
6.8
6
100
0
82
14
0
0
85
0.60
64393154--64393242
6
14.8
6
87
6
74
10
8
1
79
0.98
64402279--64402584
92
3.3
91
85
1
405
33
26
14
25
1.94
64403704--64403804
52
2.0
52
84
7
138
53
7
5
32
1.54
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64404446--64404478
11
3.2
11
87
12
52
39
9
0
51
1.34
64418260--64418306
21
2.1
23
85
14
64
61
4
4
29
1.34
64418764--64418790
2
13.5
2
100
0
54
48
0
0
51
1.00
64425390--64425429
20
2.0
20
85
4
55
50
0
10
40
1.36
64427020--64427181
25
6.6
25
72
5
89
30
22
27
19
1.98
64427116--64427181
24
2.7
24
83
2
69
31
24
28
15
1.95
64428410--64428440
15
2.0
16
93
6
55
64
9
0
25
1.24
64429482--64429523
21
2.0
21
90
4
68
71
4
0
23
1.05
64435502--64435553
4
13.0
4
76
15
54
75
3
0
21
0.97
64435500--64435548
13
3.8
12
79
12
53
77
4
0
18
0.92
64435502--64435548
18
2.7
18
90
3
69
76
4
0
19
0.95
64436006--64436045
19
2.2
19
90
4
64
77
5
0
17
0.94
64435513--64436491
496
2.0
496
95
0
1780
37
18
12
30
1.88
64438154--64438180
2
13.5
2
100
0
54
51
0
0
48
1.00
64441682--64441803
48
2.5
48
78
2
129
27
7
18
45
1.76
64441671--64441803
24
5.6
24
75
4
117
25
7
20
46
1.76
64441879--64441941
27
2.4
27
85
15
87
19
25
22
33
1.97
64441897--64441949
27
2.0
27
81
7
63
22
26
20
30
1.98
64445995--64446061
27
2.5
27
90
0
107
37
19
19
23
1.94
64468186--64468365
39
4.6
39
84
1
209
31
3
21
44
1.68
64469086--64469180
42
2.3
42
90
3
147
32
17
14
34
1.91
64470017--64470122
22
4.8
22
86
0
140
32
14
26
27
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64470208--64470242
18
1.9
18
100
0
70
40
0
37
22
1.55
64471320--64471466
73
2.0
73
95
0
267
37
23
14
25
1.92
64472235--64472310
40
1.9
39
84
10
102
42
15
2
39
1.61
64481195--64481221
11
2.5
11
100
0
54
70
0
0
29
0.88
64481357--64481394
18
2.1
19
85
14
53
36
2
23
36
1.69
64489595--64489631
18
2.1
18
94
0
65
45
2
10
40
1.53
64491693--64491749
3
19.0
3
96
0
105
68
0
0
31
0.90
64491697--64491801
6
16.0
6
80
16
57
70
1
2
24
1.11
64491693--64491800
12
8.8
13
78
18
85
69
1
2
25
1.12
64502972--64503021
26
1.9
26
84
8
66
64
12
8
16
1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226