Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 ID=Chr09-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  70713020

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  91  of  226  ( 27023 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31878027--31878056
12
2.5
12
94
0
51
73
3
16
6
1.18
31878228--31878278
26
2.0
26
84
3
68
62
7
7
21
1.48
31879682--31879711
14
2.1
14
100
0
60
20
33
0
46
1.51
31880510--31880543
17
2.0
17
94
0
59
32
11
20
35
1.89
31880454--31880602
80
1.9
80
89
0
235
25
19
28
26
1.99
31880688--31880898
108
2.0
108
86
1
298
19
19
33
27
1.96
31881420--31881467
22
2.2
22
84
0
60
22
20
18
37
1.94
31882150--31882192
7
6.1
7
84
15
54
83
0
16
0
0.64
31882072--31882171
52
2.0
50
82
5
112
73
6
7
14
1.24
31893730--31893768
20
2.0
20
90
5
62
48
5
10
35
1.59
31898535--31898572
20
1.9
20
84
10
51
34
5
5
55
1.45
31902680--31902719
17
2.3
17
86
4
53
7
17
0
75
1.03
31902688--31902732
17
2.5
17
85
7
54
6
22
0
71
1.09
31902736--31902795
7
8.6
7
94
0
102
13
26
11
48
1.76
31902794--31902827
7
5.1
7
86
13
54
0
23
0
76
0.79
31902791--31902828
12
3.2
12
88
7
51
0
21
0
78
0.74
31902791--31902827
19
1.9
19
94
0
65
0
21
0
78
0.75
31903362--31903419
30
1.9
31
92
3
100
18
0
18
62
1.34
31905168--31905213
22
2.1
23
84
8
60
50
0
19
30
1.48
31909022--31909196
53
3.5
53
72
21
207
49
6
4
40
1.48
31909030--31909213
93
2.0
93
95
0
332
48
7
5
39
1.53
31912228--31912252
11
2.3
11
100
0
50
56
16
8
20
1.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31918904--31918980
40
2.0
38
89
5
118
42
11
9
36
1.73
31927280--31927346
34
1.9
35
87
3
100
32
8
11
46
1.72
31927424--31927475
18
2.7
20
74
17
56
36
3
0
59
1.16
31928067--31928302
50
4.6
50
83
7
262
25
21
30
22
1.99
31928067--31928306
100
2.3
103
83
7
310
25
21
30
23
1.99
31928123--31928348
50
4.6
49
83
6
163
26
22
29
22
1.99
31928558--31928596
12
3.2
12
81
0
51
48
5
25
20
1.70
31938524--31938580
21
2.7
21
86
0
69
43
8
15
31
1.78
31950677--31950732
12
4.8
12
78
12
62
5
1
14
78
1.00
31950677--31950732
23
2.4
23
81
3
67
5
1
14
78
1.00
31950954--31950990
13
3.0
13
88
7
51
64
0
0
35
0.94
31951597--31951697
35
2.9
35
86
2
123
35
18
23
21
1.96
31953742--31953786
22
2.1
22
84
8
58
22
2
2
73
1.05
31953820--31953868
15
3.2
15
74
5
53
48
12
22
16
1.79
31955131--31955193
20
3.2
20
81
6
74
52
4
0
42
1.22
31955115--31955214
40
2.5
40
73
15
98
58
4
1
37
1.24
31955409--31955466
21
2.8
21
83
0
71
25
31
10
32
1.89
31956256--31956675
43
9.8
43
88
0
529
30
28
20
21
1.98
31956279--31956675
170
2.3
172
86
2
541
30
29
19
20
1.97
31957016--31957078
19
3.2
19
70
12
63
61
22
3
12
1.45
31957001--31957064
22
3.0
22
66
13
62
57
20
7
14
1.61
31957621--31957688
25
2.7
25
100
0
136
55
11
16
16
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31960344--31960374
7
4.4
7
91
0
53
38
58
3
0
1.15
31960430--31960506
39
2.0
40
86
2
111
35
40
2
22
1.68
31960432--31960515
39
2.1
40
82
2
98
35
42
2
19
1.64
31961587--31961901
41
7.7
41
82
4
386
30
26
21
20
1.98
31961587--31961900
82
3.8
82
90
1
461
30
26
21
20
1.98
31961937--31962068
38
3.4
37
80
10
149
21
21
21
34
1.97
31961955--31962069
38
3.0
38
84
5
160
23
20
21
33
1.97
31962075--31962100
12
2.2
12
100
0
52
46
30
15
7
1.74
31962334--31962394
20
3.0
20
81
9
77
14
18
9
57
1.64
31971419--31971467
21
2.3
21
79
6
55
26
28
16
28
1.97
31973105--31973143
21
1.9
20
84
5
51
51
2
7
38
1.44
31973202--31973264
16
3.9
16
77
4
56
61
1
0
36
1.05
31973701--31973749
22
2.2
23
79
17
59
32
2
4
61
1.26
31973709--31973762
10
5.2
10
76
8
54
38
1
3
55
1.28
31973718--31973767
22
2.3
22
79
6
57
40
2
4
54
1.31
31973794--31973853
19
3.1
19
79
15
70
60
5
0
35
1.19
31975044--31975068
13
1.9
13
100
0
50
56
0
0
44
0.99
31979368--31979452
9
9.4
9
82
0
107
42
23
9
24
1.84
31979368--31979452
27
3.1
27
86
0
125
42
23
9
24
1.84
31979471--31979519
24
2.0
24
96
0
89
28
8
6
57
1.52
31979579--31979622
18
2.4
18
88
0
61
13
2
43
40
1.57
31990529--31990563
18
2.0
17
88
5
52
45
0
0
54
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31990723--31990813
45
2.0
44
82
2
110
36
27
5
30
1.80
31990794--31990845
16
3.2
16
88
0
77
36
34
0
28
1.58
31997251--31997330
40
2.0
40
100
0
160
42
7
12
37
1.71
31997326--31997372
23
2.1
22
84
4
58
10
10
2
76
1.10
31997350--31997398
13
3.9
13
74
17
50
16
4
2
77
1.01
31997344--31997389
5
9.8
5
77
13
53
17
2
0
80
0.81
31997335--31997393
23
2.6
22
86
5
73
16
5
1
76
1.05
31998363--31998418
20
2.8
20
78
13
69
37
14
1
46
1.55
32000145--32000200
3
18.7
3
100
0
112
33
0
0
66
0.92
32001593--32001729
35
3.9
35
82
1
159
42
18
18
20
1.90
32001593--32001729
69
2.0
70
80
1
159
42
18
18
20
1.90
32003007--32003041
7
5.3
7
93
6
56
14
71
0
14
1.15
32003007--32003040
6
5.3
6
89
10
50
14
70
0
14
1.17
32003007--32003041
13
2.6
14
86
13
56
14
71
0
14
1.15
32022244--32022276
10
3.3
10
87
12
50
33
0
0
66
0.92
32024123--32024758
106
6.0
106
88
1
914
33
17
17
31
1.94
32026828--32027142
131
2.4
131
85
0
414
28
24
17
29
1.97
32026916--32027753
44
19.1
44
68
10
353
27
24
18
29
1.98
32026946--32027340
219
1.8
219
93
0
682
28
25
16
28
1.97
32027161--32027750
131
4.5
129
91
1
885
27
25
19
28
1.98
32028245--32028424
97
1.9
97
91
0
297
47
7
17
27
1.74
32028267--32028427
47
3.3
46
70
19
139
45
8
18
28
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32033462--32033502
14
2.9
15
85
7
50
53
2
0
43
1.13
32034052--32034094
16
2.8
16
85
3
61
44
0
4
51
1.22
32035351--32035398
25
1.9
25
86
0
69
33
18
16
31
1.94
32041243--32041296
4
13.8
4
80
7
58
68
0
5
25
1.11
32042838--32042956
44
2.7
44
81
2
123
33
21
15
28
1.95
32042910--32043564
51
12.9
52
70
14
379
29
20
15
33
1.94
32042881--32043305
96
4.3
95
73
13
282
29
21
16
32
1.95
32043010--32043209
110
1.8
110
87
2
303
30
22
16
32
1.95
32043010--32043564
257
2.2
257
88
1
799
29
20
15
33
1.94
32043171--32044003
206
4.0
201
81
6
859
29
21
14
34
1.93
32043568--32043599
15
2.1
15
94
0
55
21
40
3
34
1.69
32043473--32043704
110
2.1
111
86
1
331
29
23
13
33
1.93
32043267--32044003
206
3.6
209
85
6
925
29
21
14
34
1.93
32043683--32043908
117
2.0
114
85
8
309
30
21
13
34
1.92
32043858--32044025
45
3.6
45
74
10
167
30
22
16
30
1.95
32043800--32044032
95
2.4
96
88
0
351
30
20
16
32
1.94
32048771--32048850
24
3.2
25
80
7
92
16
23
23
36
1.94
32053937--32054000
4
16.8
4
76
12
55
67
0
4
28
1.11
32055444--32055485
22
1.9
23
85
9
61
47
7
2
42
1.43
32059188--32059247
30
2.0
30
93
0
102
38
11
18
31
1.87
32066625--32066670
11
4.2
11
83
8
58
80
0
8
10
0.91
32066634--32066681
10
5.1
9
75
9
51
79
0
6
14
0.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32066635--32066681
19
2.5
18
77
16
51
78
0
6
14
0.93
32069983--32070042
29
2.1
30
81
6
70
61
3
8
26
1.40
32071460--32071495
14
2.5
14
86
4
54
33
0
0
66
0.92
32075152--32075187
17
2.1
17
89
0
54
36
13
8
41
1.75
32078008--32078078
32
2.3
29
83
11
81
42
26
22
8
1.82
32079591--32079642
10
5.3
10
76
4
52
36
1
0
61
1.07
32079586--32079646
29
2.1
29
87
0
86
32
3
0
63
1.10
32081590--32081705
61
1.9
60
84
6
155
37
6
7
49
1.57
32085785--32085825
21
1.9
22
85
5
57
19
2
4
73
1.13
32087793--32088097
126
2.4
126
88
2
443
28
19
14
37
1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226