Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 ID=Chr09-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  70713020

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  81  of  226  ( 27023 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29369929--29370006
26
3.2
25
77
13
74
0
8
8
82
0.86
29369929--29370007
11
7.5
10
78
12
52
0
8
8
82
0.85
29375684--29376048
17
20.7
17
72
10
225
44
10
13
31
1.77
29375856--29375955
20
5.3
19
75
10
89
43
9
12
36
1.73
29375858--29375980
56
2.2
55
87
4
176
43
10
13
32
1.77
29376340--29376364
5
5.0
5
100
0
50
80
0
0
20
0.72
29376542--29376566
7
3.6
7
100
0
50
0
12
0
88
0.53
29376535--29376576
18
2.3
18
88
8
59
0
16
0
83
0.65
29376532--29376589
11
5.4
11
73
17
50
0
20
0
79
0.74
29376617--29376681
24
3.2
19
76
21
69
0
29
46
24
1.53
29376635--29376705
24
3.0
24
91
0
115
1
33
42
22
1.63
29376721--29376760
21
2.0
20
90
5
62
0
12
5
82
0.82
29376879--29376944
10
6.5
10
77
8
71
0
21
1
77
0.85
29376887--29376947
16
4.1
15
74
16
56
0
22
1
75
0.89
29376904--29376952
3
17.3
3
85
12
52
0
26
0
73
0.83
29377302--29377470
30
5.7
30
81
2
180
36
5
25
31
1.80
29377350--29377463
59
1.9
60
90
1
185
35
2
25
35
1.70
29377878--29378408
44
12.0
44
82
3
557
32
23
12
32
1.92
29377878--29378380
177
2.8
177
87
2
692
31
23
12
32
1.91
29379699--29379746
22
2.1
23
88
11
73
12
12
0
75
1.06
29384318--29384351
2
16.5
2
87
6
50
52
2
0
44
1.16
29384679--29384717
3
12.7
3
83
5
51
66
5
0
28
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29387288--29387361
27
2.8
26
87
4
112
18
22
18
39
1.93
29391138--29391166
5
6.0
5
92
8
51
62
37
0
0
0.96
29392564--29392621
3
19.0
3
96
3
107
32
0
0
67
0.91
29397191--29398057
44
19.6
43
81
6
752
31
17
20
30
1.95
29397191--29398057
132
6.5
131
82
3
914
31
17
20
30
1.95
29402156--29402234
3
25.3
3
72
10
52
30
6
2
60
1.35
29402155--29402227
30
2.4
29
80
15
78
28
8
2
60
1.40
29402282--29402335
27
2.0
27
96
0
99
18
27
33
20
1.96
29402473--29402554
40
2.0
42
88
9
125
39
1
0
59
1.05
29402881--29402922
16
2.5
17
76
11
50
38
2
0
59
1.10
29413256--29413289
4
8.5
4
87
12
52
73
0
23
2
0.97
29427240--29427285
19
2.3
20
78
10
51
65
4
2
28
1.23
29432037--29432181
69
2.1
71
88
6
215
40
13
11
34
1.80
29433553--29433735
50
3.7
50
84
0
222
21
28
22
26
1.99
29435133--29435237
41
2.6
41
79
0
102
31
22
16
29
1.96
29435319--29435459
75
1.9
74
80
5
167
43
19
4
32
1.70
29435763--29435803
2
20.5
2
100
0
82
51
0
0
48
1.00
29442633--29442786
69
2.2
71
86
5
206
42
16
10
31
1.81
29443100--29443244
75
1.9
75
80
5
168
44
17
4
34
1.68
29443507--29443540
8
4.2
8
84
0
50
50
11
0
38
1.39
29446773--29446808
17
2.1
17
100
0
72
33
11
5
50
1.61
29451519--29451555
16
2.2
17
86
13
51
43
0
5
51
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29451518--29451581
17
3.8
16
77
10
65
45
0
3
51
1.17
29451981--29452005
7
3.6
7
100
0
50
44
0
0
56
0.99
29457528--29457599
3
24.0
3
100
0
144
33
0
0
66
0.92
29461655--29461693
20
2.0
20
85
10
53
56
2
15
25
1.52
29462249--29462277
3
9.7
3
100
0
58
65
0
0
34
0.93
29462276--29462322
3
15.7
3
100
0
94
34
0
0
65
0.93
29463047--29463199
22
7.0
22
90
0
225
32
14
26
26
1.94
29463328--29463361
17
1.9
18
88
5
52
73
5
8
11
1.24
29465020--29465049
15
2.0
15
100
0
60
33
13
13
40
1.83
29466213--29466856
150
4.3
148
83
8
809
29
11
7
51
1.65
29466213--29466856
302
2.1
298
85
6
899
29
11
7
51
1.65
29466589--29467129
269
2.0
271
89
3
822
29
11
8
50
1.68
29466733--29466963
117
2.0
116
88
5
349
29
10
8
51
1.66
29466841--29467145
154
2.0
158
85
5
426
29
12
8
49
1.69
29469883--29469919
15
2.2
17
86
13
51
59
2
10
27
1.44
29469883--29469920
16
2.2
18
86
9
53
60
2
10
26
1.43
29469883--29469921
17
2.2
18
86
4
53
61
2
10
25
1.41
29475032--29475177
61
2.4
60
75
6
141
41
16
4
38
1.67
29476317--29476529
107
2.0
107
85
3
286
31
22
15
30
1.95
29487190--29487238
15
3.5
15
83
16
77
34
10
8
46
1.67
29487185--29487258
20
3.3
20
72
22
58
32
8
8
51
1.61
29487200--29487239
12
3.1
12
80
19
53
35
10
7
47
1.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29491810--29491950
63
2.3
62
83
6
169
26
28
19
24
1.99
29493233--29493417
91
2.0
91
98
0
361
40
15
5
38
1.72
29496548--29496600
27
2.0
27
81
7
63
67
3
18
9
1.33
29496830--29496873
19
2.4
18
82
14
54
50
2
2
45
1.27
29497490--29497527
2
19.0
2
100
0
76
50
0
0
50
1.00
29499999--29500061
3
21.0
3
100
0
126
33
0
0
66
0.92
29502381--29502414
11
3.0
11
91
4
50
58
11
0
29
1.33
29508795--29508824
16
1.9
16
93
6
53
40
0
3
56
1.16
29508874--29508931
16
3.7
16
75
11
57
48
0
1
50
1.11
29508986--29509020
17
2.1
17
88
0
52
60
0
0
40
0.97
29517003--29517042
20
2.0
20
90
0
62
35
2
5
57
1.34
29517006--29517049
20
2.2
20
83
0
52
31
2
9
56
1.43
29526571--29526614
22
2.0
22
82
8
54
34
15
15
34
1.90
29529634--29529682
18
2.6
19
78
18
57
22
2
2
73
1.04
29529633--29529682
22
2.3
22
83
10
66
22
2
2
74
1.03
29543659--29543698
20
2.0
20
100
0
80
30
10
10
50
1.69
29555109--29555141
6
5.5
6
100
0
66
15
0
0
84
0.61
29557607--29557668
30
2.1
30
82
11
74
48
4
0
46
1.23
29559627--29559785
82
2.0
82
82
7
200
34
18
13
32
1.91
29563044--29563531
244
2.0
244
98
0
949
35
11
19
32
1.88
29570940--29570965
2
13.0
2
100
0
52
50
0
0
50
1.00
29576406--29576458
26
2.0
26
100
0
106
41
15
11
32
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29580407--29580470
21
3.0
21
75
11
67
26
17
18
37
1.93
29581030--29581094
33
2.0
33
100
0
130
21
21
21
35
1.96
29584030--29584126
7
14.0
7
74
10
83
49
9
1
40
1.42
29584050--29584124
21
3.6
21
88
0
105
50
8
1
40
1.40
29585926--29585955
9
3.3
9
90
0
51
30
0
13
56
1.37
29590152--29590208
29
2.0
29
89
0
87
66
3
0
29
1.08
29593646--29593719
28
2.7
27
91
6
114
43
9
0
47
1.36
29593705--29593742
17
2.2
18
90
4
60
71
15
0
13
1.16
29593784--29593859
27
2.8
27
93
0
125
23
28
28
18
1.98
29594077--29594150
3
24.3
3
94
2
130
32
0
2
64
1.07
29594149--29594186
3
12.7
3
100
0
76
0
0
31
68
0.90
29598317--29598400
4
20.0
4
71
22
57
0
30
0
69
0.89
29598274--29598342
16
4.0
16
73
15
66
0
33
1
65
1.02
29598272--29598371
20
5.2
19
68
23
66
0
34
1
65
1.00
29598317--29598402
24
3.6
24
79
17
106
0
31
0
68
0.90
29598536--29598575
18
2.2
18
86
4
53
12
0
17
70
1.18
29598564--29598635
28
2.6
29
82
4
94
48
1
9
40
1.45
29603872--29603978
46
2.4
45
85
4
144
22
18
17
41
1.91
29603958--29604006
6
7.8
6
86
2
62
18
18
14
48
1.80
29609013--29609044
16
1.9
17
93
6
57
50
0
9
40
1.35
29609310--29609348
12
3.3
12
83
16
55
41
0
0
58
0.98
29614278--29614308
15
2.1
15
93
0
53
70
19
6
3
1.22
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29615632--29615681
22
2.2
23
92
3
84
36
30
12
22
1.90
29618392--29618437
24
2.0
24
95
4
85
41
26
4
28
1.74
29621021--29621052
6
5.3
6
100
0
64
50
0
15
34
1.45
29623616--29623653
16
2.5
16
87
8
53
47
7
10
34
1.67
29624640--29624676
2
18.5
2
94
0
65
48
0
2
48
1.15
29625660--29625721
27
2.3
28
86
13
94
22
30
20
25
1.98
29626094--29626264
54
3.2
54
66
21
158
52
19
2
25
1.60
29625900--29626320
108
4.0
108
90
6
623
54
16
1
27
1.53
29625882--29626320
210
2.1
210
86
7
611
54
16
1
26
1.52
29626378--29626516
72
1.9
71
98
1
269
54
15
0
29
1.42

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226