Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 ID=Chr09-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  70713020

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  218  of  226  ( 27023 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
68239193--68239310
45
2.7
46
79
11
122
27
19
25
27
1.99
68239190--68239697
44
11.7
42
69
14
196
27
19
24
27
1.99
68239104--68239690
217
2.7
217
90
1
901
28
19
23
28
1.98
68241280--68241365
24
3.5
25
76
9
72
32
2
3
61
1.25
68245097--68245299
32
6.4
32
82
2
230
39
19
18
22
1.92
68245123--68245299
96
1.8
96
87
0
264
40
20
18
20
1.92
68245485--68245543
24
2.5
23
78
8
73
45
25
8
20
1.79
68245580--68245673
27
3.5
27
86
0
125
26
18
17
38
1.92
68249188--68249225
20
1.9
20
100
0
76
21
7
21
50
1.74
68254259--68254298
20
2.0
20
90
0
62
50
12
10
27
1.72
68254247--68254313
34
1.9
35
87
3
100
46
11
8
32
1.72
68254282--68254321
14
2.9
14
84
0
53
42
17
7
32
1.77
68254701--68254737
15
2.4
16
82
13
51
43
13
0
43
1.44
68260059--68260108
25
2.0
25
92
0
82
52
14
12
22
1.74
68263755--68264765
78
13.2
77
86
4
1230
27
16
21
33
1.95
68263755--68264753
154
6.5
153
87
3
1194
27
16
22
33
1.95
68265401--68265489
39
2.3
39
83
13
112
66
0
33
0
0.92
68265453--68265501
23
2.1
23
85
7
64
59
0
40
0
0.98
68265394--68265500
54
1.9
56
83
9
139
64
0
35
0
0.94
68265581--68265623
7
6.1
7
86
10
52
76
0
23
0
0.78
68265577--68265626
14
3.6
14
74
12
50
74
0
26
0
0.83
68265575--68265629
10
5.4
10
77
16
51
76
0
23
0
0.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
68265595--68265629
17
2.1
17
94
5
63
82
0
17
0
0.66
68266306--68266374
10
7.0
10
75
15
56
59
0
1
39
1.06
68266344--68266384
20
2.0
20
85
0
55
56
0
0
43
0.99
68275533--68275688
79
2.0
79
93
0
267
46
3
5
44
1.45
68275807--68275846
20
2.0
19
85
9
53
42
0
20
37
1.52
68277375--68277405
3
10.3
3
100
0
62
32
0
0
67
0.91
68280907--68280936
2
15.0
2
100
0
60
50
0
0
50
1.00
68283532--68283579
14
3.4
14
77
11
62
66
2
0
31
1.03
68283532--68283587
28
2.0
28
82
0
67
67
1
1
28
1.10
68287023--68287081
19
2.9
21
75
12
68
38
0
5
55
1.22
68287008--68287072
20
3.1
20
78
13
69
43
0
4
52
1.22
68289926--68289981
20
3.0
20
65
24
59
35
12
14
37
1.84
68300958--68301014
3
19.0
3
100
0
114
66
0
0
33
0.92
68303366--68303497
69
1.9
67
87
6
194
43
9
11
35
1.74
68305794--68305885
40
2.3
40
90
0
139
27
25
22
25
2.00
68307239--68307458
99
2.2
97
82
7
248
40
15
2
42
1.61
68307573--68307681
40
2.7
40
88
2
121
22
26
27
23
1.99
68308427--68308478
21
2.4
21
80
3
59
26
0
7
65
1.20
68310407--68310441
2
17.5
2
100
0
70
48
0
0
51
1.00
68311256--68311294
20
2.0
20
90
10
62
71
10
0
17
1.12
68313465--68313489
2
12.5
2
100
0
50
0
48
0
52
1.00
68315230--68315262
7
4.9
7
96
3
59
0
69
0
30
0.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
68318919--68318990
32
2.2
32
82
0
99
44
11
9
34
1.73
68323544--68323618
35
2.2
35
90
2
116
34
25
16
24
1.95
68327767--68327810
22
2.0
22
86
8
63
25
25
6
43
1.79
68331032--68331057
11
2.4
11
100
0
52
53
0
7
38
1.30
68336412--68336455
19
2.2
22
84
15
60
52
13
0
34
1.41
68341367--68341411
2
22.5
2
100
0
90
48
0
0
51
1.00
68342674--68342785
44
2.6
44
85
5
149
32
26
16
24
1.96
68342905--68342958
2
27.0
2
92
0
90
48
0
3
48
1.19
68345303--68345333
8
3.9
8
100
0
62
48
0
0
51
1.00
68364956--68364984
2
14.5
2
100
0
58
48
0
0
51
1.00
68368702--68368746
2
22.5
2
100
0
90
51
0
0
48
1.00
68373667--68373704
3
12.7
3
100
0
76
34
0
0
65
0.93
68373919--68373991
15
4.4
17
86
11
91
36
1
0
61
1.05
68373921--68373983
3
21.0
3
100
0
126
33
0
0
66
0.92
68377622--68377660
17
2.3
17
95
0
69
43
12
20
23
1.86
68378018--68378124
50
2.2
50
81
8
121
37
3
17
41
1.68
68379099--68379193
49
1.9
49
95
0
172
35
6
17
40
1.76
68379390--68379427
18
2.1
18
100
0
76
36
15
5
42
1.70
68380094--68380217
45
2.8
44
81
8
119
24
21
12
41
1.88
68384001--68384135
34
4.0
33
74
12
114
42
11
13
31
1.80
68387989--68388020
16
2.0
16
93
0
55
40
15
12
31
1.85
68391688--68391728
19
2.2
18
95
4
73
29
2
0
68
1.03
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
68391680--68391757
29
2.8
29
84
11
117
28
2
0
69
1.02
68393062--68393108
3
15.7
3
100
0
94
34
0
0
65
0.93
68395016--68395060
17
2.6
17
85
0
72
28
0
0
71
0.87
68395015--68395063
25
2.0
25
87
0
71
26
0
0
73
0.83
68401967--68402000
15
2.3
15
89
0
50
79
11
5
2
1.02
68406288--68406321
2
17.0
2
100
0
68
50
0
0
50
1.00
68406778--68406825
23
2.1
23
84
7
62
58
2
0
39
1.10
68407135--68407210
28
2.8
26
75
18
75
32
2
3
60
1.29
68408191--68408220
8
3.8
8
100
0
60
20
0
0
80
0.72
68408218--68408264
20
2.5
18
76
10
58
36
2
2
59
1.21
68410063--68410107
3
15.0
3
100
0
90
33
0
0
66
0.92
68411387--68411424
20
1.9
20
94
0
67
36
13
15
34
1.87
68416017--68416056
17
2.4
17
82
0
53
55
2
12
30
1.50
68416767--68416816
11
4.7
11
75
9
50
42
0
0
58
0.98
68416788--68416845
25
2.4
25
85
5
75
36
1
0
62
1.06
68416764--68416828
31
2.1
31
100
0
130
40
0
0
60
0.97
68416819--68416858
16
2.4
16
87
4
53
37
2
0
60
1.11
68416802--68416859
18
3.0
18
76
14
53
37
1
0
60
1.07
68416767--68416914
31
4.0
39
74
19
117
38
3
1
56
1.24
68425463--68425594
19
6.8
19
89
3
210
37
11
14
36
1.82
68425463--68425601
59
2.4
56
88
6
208
38
10
14
36
1.81
68427629--68427682
21
2.5
21
84
6
63
42
0
5
51
1.25
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
68427786--68427864
39
2.0
38
80
9
88
36
7
5
50
1.53
68427948--68428001
19
2.9
19
81
8
67
42
7
0
50
1.30
68428403--68428607
110
1.9
109
86
3
288
28
16
20
34
1.94
68434575--68434631
24
2.3
25
79
11
64
29
12
1
56
1.46
68435343--68435391
8
6.1
8
90
9
73
87
10
0
2
0.62
68436643--68437056
132
3.1
132
91
2
645
29
19
26
24
1.98
68436754--68436939
44
4.2
44
63
10
110
27
20
26
24
1.99
68436983--68437320
44
7.7
44
65
10
118
27
16
24
30
1.97
68436874--68437295
132
3.2
132
83
5
480
28
17
23
30
1.97
68436643--68437186
264
2.1
264
80
7
588
28
19
25
26
1.98
68437524--68437655
19
6.8
19
89
3
210
38
11
14
35
1.82
68437524--68437662
59
2.4
57
88
6
210
38
10
14
35
1.81
68439185--68439379
98
2.0
98
96
0
363
28
10
24
36
1.89
68452508--68452533
13
2.0
13
100
0
52
53
0
0
46
1.00
68452880--68452931
22
2.4
22
100
0
104
21
26
15
36
1.93
68462356--68462465
53
2.1
53
100
0
220
32
26
10
30
1.90
68463031--68463061
16
1.9
16
93
0
53
45
6
22
25
1.76
68463237--68463290
26
2.1
26
82
6
65
50
0
0
50
1.00
68463236--68463373
61
2.3
57
83
6
168
50
3
0
46
1.19
68479564--68479620
19
3.1
19
76
2
53
68
3
1
26
1.15
68479706--68479738
16
2.1
16
94
0
57
33
12
6
48
1.65
68480511--68480553
19
2.1
21
83
8
54
65
6
4
23
1.37
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
68482829--68483038
105
2.0
104
99
0
411
37
13
11
37
1.81
68485038--68485063
2
13.0
2
100
0
52
50
0
0
50
1.00
68485123--68485182
30
2.1
30
87
6
88
45
8
0
46
1.33
68492867--68492906
20
2.0
20
90
0
62
37
2
0
60
1.11
68495174--68495212
18
2.2
18
90
0
60
76
2
20
0
0.90
68495187--68495229
13
3.4
13
77
6
52
76
2
20
0
0.89
68496135--68496360
88
2.6
89
84
2
294
30
23
22
23
1.99
68496295--68496418
58
2.1
58
83
0
149
32
23
25
19
1.98
68496210--68496507
147
2.0
146
80
4
332
31
21
22
24
1.98
68496353--68496729
89
4.2
90
87
2
510
28
23
24
23
1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226