Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 ID=Chr09-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  70713020

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  22  of  226  ( 27023 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9943777--9943818
10
3.8
11
87
9
59
45
0
35
19
1.50
9954318--9954392
25
2.8
25
82
11
78
45
10
21
22
1.82
9958216--9958690
236
2.0
236
96
0
871
42
14
16
26
1.86
9962455--9962630
19
9.2
19
67
9
83
61
6
0
30
1.26
9962455--9962630
10
18.4
9
68
15
68
61
6
0
30
1.26
9964212--9964273
29
2.1
31
81
6
74
30
12
19
37
1.89
9969173--9969199
13
2.1
13
100
0
54
37
0
22
40
1.54
9977154--9977195
21
2.0
21
86
9
59
16
38
0
45
1.48
9978708--9978732
6
4.2
6
100
0
50
52
32
0
16
1.44
9980791--9980824
3
11.3
3
100
0
68
35
0
32
32
1.58
10012473--10012523
27
1.9
26
84
11
68
60
1
3
33
1.26
10013031--10013113
28
2.9
27
75
21
71
65
4
4
25
1.33
10013207--10013246
20
2.0
20
90
9
64
65
0
10
25
1.24
10013210--10013256
21
2.2
21
77
7
51
72
0
10
17
1.12
10016835--10016969
40
3.4
39
76
7
139
31
24
17
25
1.97
10016835--10016970
41
3.5
40
75
7
134
32
24
17
25
1.97
10017476--10017511
18
1.9
19
88
5
56
33
27
0
38
1.57
10017793--10017854
11
5.8
10
73
19
54
1
19
4
74
1.09
10017868--10017901
15
2.1
17
89
10
54
47
0
0
52
1.00
10017871--10017925
13
4.2
13
80
15
60
47
1
0
50
1.11
10017880--10017933
28
2.0
27
85
7
74
48
3
0
48
1.19
10018127--10018162
13
2.8
13
95
0
63
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10019449--10019723
135
2.0
135
97
0
523
27
6
21
44
1.78
10022745--10022791
25
1.9
24
91
4
76
25
25
12
36
1.92
10027324--10027362
21
1.9
20
85
15
53
15
7
5
71
1.26
10043604--10043632
14
2.0
15
93
6
51
34
0
0
65
0.93
10044840--10045054
85
2.5
87
74
10
208
42
14
8
33
1.76
10045227--10045271
19
2.3
20
80
3
56
66
2
2
28
1.15
10045264--10045355
18
4.7
19
73
15
73
67
2
2
28
1.14
10045264--10045355
10
9.6
10
70
17
54
67
2
2
28
1.14
10045285--10045356
29
2.5
28
80
6
90
66
2
1
29
1.14
10045285--10045355
20
3.7
20
74
10
67
67
2
1
28
1.13
10045543--10045590
19
2.5
20
93
3
80
29
8
0
62
1.24
10045690--10045758
28
2.5
28
75
13
70
42
2
0
55
1.15
10048622--10048756
49
2.8
49
93
0
216
25
26
20
28
1.99
10048779--10048907
50
2.4
53
79
11
140
25
27
17
28
1.98
10051025--10051078
21
2.6
20
78
16
56
38
1
3
55
1.28
10063904--10064003
51
2.0
51
86
4
139
45
3
26
26
1.68
10063962--10064039
11
7.0
11
75
18
65
44
1
29
24
1.62
10063962--10064039
22
3.5
22
80
16
90
44
1
29
24
1.62
10063962--10064038
33
2.3
35
84
8
106
44
1
29
24
1.62
10069932--10069987
20
2.5
22
75
16
53
32
1
3
62
1.23
10076271--10076329
27
2.2
27
96
0
109
28
20
35
15
1.93
10076494--10076536
21
2.1
21
95
4
79
72
0
0
27
0.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10076793--10076830
19
2.0
19
89
0
58
50
7
5
36
1.54
10076929--10077000
27
2.7
27
88
0
108
52
12
1
33
1.48
10077209--10077246
19
2.0
19
89
0
58
36
5
7
50
1.54
10077459--10077530
27
2.7
27
97
0
135
20
38
22
18
1.93
10077574--10077629
28
2.0
29
82
3
69
48
3
1
46
1.30
10077665--10077738
28
2.6
29
72
18
66
32
14
6
45
1.71
10086312--10086348
18
2.1
17
90
5
56
40
0
0
59
0.97
10086322--10086361
12
3.0
14
82
17
50
42
0
0
57
0.98
10086676--10086771
28
3.5
28
94
1
167
37
9
0
53
1.34
10092570--10092656
44
2.0
44
97
0
165
45
16
3
34
1.64
10099046--10099084
18
2.1
18
85
4
51
64
12
0
23
1.28
10101291--10101335
17
2.6
17
96
3
81
31
0
11
57
1.33
10101291--10101335
8
5.1
9
86
13
67
31
0
11
57
1.33
10105086--10105113
2
14.0
2
100
0
56
50
50
0
0
1.00
10109652--10109774
61
2.0
60
81
10
144
24
8
22
44
1.80
10110173--10110206
17
2.0
17
88
0
50
5
29
17
47
1.71
10114935--10115001
31
2.2
30
81
5
80
35
11
11
40
1.79
10116208--10116276
29
2.3
30
85
5
86
34
2
11
50
1.54
10116753--10116805
25
2.1
25
82
6
63
30
7
1
60
1.35
10116958--10117001
21
2.1
21
95
0
79
22
6
36
34
1.81
10118135--10118165
16
1.9
16
93
0
53
41
25
19
12
1.87
10120359--10120386
12
2.3
12
100
0
56
17
21
10
50
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10120372--10120421
24
2.1
24
85
7
66
26
14
4
56
1.56
10121706--10121730
8
3.1
8
100
0
50
36
0
0
64
0.94
10142928--10142956
6
4.8
6
100
0
58
17
0
48
34
1.47
10147770--10147794
6
4.2
6
100
0
50
36
0
0
64
0.94
10155390--10155426
17
2.2
16
90
4
56
32
0
2
64
1.07
10164363--10164458
47
2.0
47
89
0
147
52
11
9
27
1.68
10165649--10165688
7
5.7
7
100
0
80
87
0
0
12
0.54
10169907--10169935
2
14.5
2
100
0
58
0
51
0
48
1.00
10185321--10185351
16
1.9
16
100
0
62
25
12
16
45
1.83
10187211--10187274
30
2.1
30
88
0
92
45
14
1
39
1.54
10188217--10188352
71
1.9
70
90
1
218
30
19
17
33
1.95
10205207--10205275
16
4.4
16
78
10
54
53
1
2
42
1.24
10205854--10205894
18
2.3
18
84
12
50
36
4
2
56
1.34
10206874--10207019
58
2.5
60
81
9
174
50
13
6
29
1.66
10209005--10209037
14
2.4
14
90
10
50
48
9
0
42
1.35
10223415--10223459
19
2.4
17
82
17
54
31
0
4
64
1.13
10227173--10227213
22
2.0
22
85
9
59
48
0
2
48
1.14
10237387--10237461
40
1.9
38
81
10
89
40
1
4
54
1.27
10237380--10237486
38
2.8
37
73
14
94
42
0
2
54
1.21
10242522--10242565
16
2.8
16
76
13
54
56
6
0
36
1.26
10255167--10255205
19
2.1
18
86
13
53
10
10
15
64
1.50
10288505--10288588
39
2.2
37
76
4
87
65
2
1
30
1.13
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10291334--10291397
21
3.4
21
68
28
70
10
25
7
56
1.60
10291336--10291406
35
2.0
35
97
0
133
8
26
9
54
1.61
10312639--10312673
2
17.5
2
100
0
70
51
0
0
48
1.00
10312690--10312751
22
2.8
22
92
0
97
24
25
14
35
1.93
10314552--10314603
25
2.1
25
82
10
63
63
5
1
28
1.28
10320387--10320540
79
1.9
81
94
2
276
28
14
17
38
1.90
10326027--10326057
16
1.9
16
100
0
62
61
6
32
0
1.21
10344627--10344665
2
19.0
2
94
5
69
48
2
0
48
1.15
10351618--10351802
46
4.0
46
94
0
316
28
28
9
33
1.89
10353031--10353078
17
2.9
17
87
3
62
54
20
0
25
1.45
10363180--10363205
6
4.3
6
100
0
52
30
30
19
19
1.96
10382365--10382407
19
2.3
19
96
4
79
34
0
16
48
1.46
10384295--10384327
2
17.0
2
93
6
59
48
0
0
51
1.00
10384526--10384591
21
2.9
21
73
13
60
60
0
1
37
1.06
10384537--10384577
21
2.0
20
90
4
64
56
0
0
43
0.99
10384560--10384604
19
2.4
19
81
3
56
62
0
2
35
1.08
10385830--10385854
12
2.1
12
100
0
50
52
0
0
48
1.00
10387382--10387443
24
2.5
25
74
10
65
46
4
0
48
1.23
10392636--10392661
3
8.7
3
100
0
52
69
0
0
30
0.89
10405633--10405658
2
13.0
2
100
0
52
50
0
50
0
1.00
10412484--10412532
24
2.0
24
84
7
64
57
2
4
36
1.30
10414953--10414978
3
8.7
3
100
0
52
0
30
0
69
0.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10415925--10415968
21
2.1
21
82
0
52
11
38
34
15
1.84
10431420--10431605
50
3.7
50
76
6
162
23
26
20
29
1.99
10434147--10434253
56
1.9
56
86
3
153
42
7
5
44
1.56
10437019--10437059
18
2.2
18
87
12
57
60
9
7
21
1.52
10449670--10449706
15
2.3
17
90
9
60
32
5
0
62
1.18
10454662--10454785
61
2.0
61
96
0
230
34
6
20
38
1.78
10476962--10477118
78
2.0
78
96
0
287
48
24
13
14
1.79
10488048--10488232
42
4.3
42
90
3
255
30
21
22
25
1.99
10488669--10488713
21
2.1
21
87
0
63
2
44
22
31
1.65
10493268--10493823
261
2.1
261
92
1
927
34
21
17
26
1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226