Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 ID=Chr09-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  70713020

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  159  of  226  ( 27023 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51243102--51243243
50
2.8
50
91
0
221
25
21
30
22
1.99
51245170--51245199
15
2.0
15
100
0
60
73
6
13
6
1.24
51246170--51246233
24
2.7
24
80
0
74
35
1
6
56
1.34
51254515--51254556
19
2.3
18
88
8
59
21
26
35
16
1.94
51255431--51255472
19
2.2
20
83
12
52
14
0
16
69
1.20
51259588--51259621
13
2.6
13
85
0
50
0
20
0
79
0.73
51264423--51264465
18
2.3
18
80
11
52
65
6
4
23
1.37
51264459--51264497
6
6.3
6
82
5
51
76
2
0
20
0.90
51264551--51264611
28
2.2
28
82
5
70
49
8
8
34
1.62
51264968--51265006
2
19.5
2
100
0
78
48
0
0
51
1.00
51266289--51266332
22
2.0
22
95
0
79
29
18
22
29
1.97
51273829--51274085
105
2.4
105
86
0
361
28
28
14
28
1.95
51276886--51276918
14
2.3
15
89
5
50
33
0
0
66
0.92
51276953--51276990
16
2.4
17
91
8
62
39
0
5
55
1.23
51278900--51279151
105
2.4
105
93
0
414
29
28
13
27
1.94
51278900--51279233
105
3.2
105
87
0
373
30
27
13
28
1.94
51280156--51280230
21
3.4
22
78
14
66
44
5
0
50
1.24
51283704--51283739
18
2.0
18
100
0
72
50
0
5
44
1.25
51286421--51286454
15
2.3
15
90
5
52
35
0
0
64
0.94
51286790--51286836
10
4.4
10
85
15
67
34
0
2
63
1.06
51289173--51289516
17
19.5
18
70
14
182
45
10
12
30
1.76
51289179--51289355
18
9.9
17
73
15
99
50
10
10
27
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51289172--51289361
36
5.3
36
70
15
124
48
10
11
30
1.71
51289192--51289244
16
3.2
16
78
5
61
52
9
7
30
1.61
51289150--51289342
92
2.1
91
80
7
212
49
9
10
30
1.69
51289280--51289516
18
13.6
17
69
17
105
43
10
15
29
1.81
51289281--51289521
35
7.0
34
70
15
147
43
11
15
29
1.81
51289400--51289535
69
1.9
71
84
8
181
44
8
13
34
1.73
51289402--51289522
52
2.3
50
78
13
129
42
9
14
33
1.77
51290252--51290348
13
7.3
12
73
16
68
3
16
0
80
0.84
51290259--51290348
28
3.2
30
76
19
104
2
17
0
80
0.82
51290260--51290348
27
3.3
27
80
10
110
2
17
0
79
0.83
51290252--51290330
12
6.2
12
77
17
63
3
15
0
81
0.84
51290421--51290462
22
1.9
22
85
0
57
2
30
0
66
1.04
51290458--51290489
14
2.3
14
94
0
55
3
6
21
68
1.26
51292822--51292899
36
2.2
35
80
11
86
46
8
1
43
1.43
51303874--51303909
18
2.0
18
94
0
63
50
0
8
41
1.33
51308776--51308861
36
2.4
35
81
7
93
51
8
1
39
1.39
51310026--51310239
105
2.0
105
85
3
288
28
28
13
29
1.94
51311168--51311201
12
2.9
11
91
8
50
58
0
0
41
0.98
51311173--51311201
11
2.5
12
94
5
51
58
0
0
41
0.98
51311230--51311285
26
2.2
26
87
3
78
53
1
0
44
1.11
51311587--51311623
9
4.1
9
86
13
58
45
10
10
32
1.74
51311829--51311888
30
2.0
31
83
9
79
20
38
0
41
1.52
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51315802--51315938
67
2.0
67
100
0
274
38
1
16
43
1.57
51319549--51319692
6
24.0
6
97
0
243
29
3
16
50
1.62
51319810--51319842
2
16.5
2
100
0
66
51
0
0
48
1.00
51320209--51320312
41
2.5
41
85
3
129
28
22
22
26
1.99
51320747--51320798
2
26.0
2
80
0
50
38
0
1
59
1.08
51320747--51320793
14
3.4
14
87
0
67
38
0
0
61
0.96
51320747--51320798
10
5.2
10
85
0
68
38
0
1
59
1.08
51326418--51326526
23
5.0
22
83
7
134
17
17
24
40
1.91
51326923--51326959
19
1.9
19
88
0
56
51
2
18
27
1.60
51329919--51330147
105
2.2
105
84
1
253
30
27
14
28
1.95
51345890--51346106
97
2.2
97
98
0
416
35
12
9
42
1.75
51347638--51347682
2
23.5
2
84
8
58
51
0
2
46
1.13
51350053--51350130
36
2.2
35
80
15
88
47
10
1
41
1.46
51353403--51353621
105
2.1
103
79
6
226
31
25
13
30
1.93
51355687--51355764
36
2.2
35
84
6
102
47
10
1
41
1.46
51356339--51356467
51
2.5
51
92
0
204
29
25
13
31
1.94
51359172--51359216
17
2.6
17
83
13
65
77
0
20
2
0.87
51361999--51362317
105
3.0
105
83
0
388
29
27
13
29
1.94
51363583--51363623
15
2.7
15
92
0
64
39
2
0
58
1.11
51363612--51363645
14
2.4
14
90
0
50
47
5
2
44
1.42
51367851--51368149
50
5.8
50
86
2
355
20
29
23
26
1.99
51368244--51368275
13
2.5
13
94
0
55
56
12
0
31
1.37
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51368488--51368544
30
1.9
30
86
10
82
29
24
5
40
1.77
51380603--51380635
5
6.8
5
93
6
59
0
18
0
81
0.68
51380604--51380634
9
3.3
9
91
8
53
0
19
0
80
0.71
51380603--51380635
14
2.3
15
94
5
59
0
18
0
81
0.68
51381389--51381425
5
7.4
5
90
0
56
40
18
16
24
1.90
51382055--51382087
3
11.7
3
87
12
52
66
0
33
0
0.92
51384600--51384629
16
1.9
15
93
6
51
0
16
0
83
0.65
51387269--51387623
105
3.4
105
84
2
399
29
26
14
30
1.95
51391446--51391480
17
2.1
17
89
5
54
37
0
0
62
0.95
51393333--51393374
2
21.0
2
100
0
84
50
0
0
50
1.00
51398590--51398704
58
2.0
58
92
0
194
26
24
21
27
1.99
51402394--51402438
21
2.0
23
87
12
67
57
4
0
37
1.19
51402416--51402511
37
2.5
41
81
10
121
64
0
1
34
1.01
51402452--51402513
28
2.3
27
89
10
99
67
0
1
30
1.00
51418668--51418898
105
2.2
105
92
0
390
28
29
14
28
1.95
51425268--51425292
6
4.2
6
100
0
50
48
0
0
52
1.00
51426304--51426346
11
3.9
11
82
8
52
76
2
18
2
1.00
51436394--51436446
27
1.9
28
85
11
74
39
11
9
39
1.74
51438702--51438739
18
2.1
18
90
9
60
73
2
0
23
0.95
51440199--51440249
18
2.8
18
75
0
66
13
43
3
39
1.63
51447065--51447100
15
2.4
15
90
0
63
86
2
0
11
0.68
51447064--51447102
8
5.0
8
87
6
62
84
2
0
12
0.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51447119--51447162
6
7.0
6
85
10
61
81
0
18
0
0.68
51447110--51447161
26
2.0
25
92
3
86
82
0
15
1
0.75
51447498--51447542
14
3.2
14
81
9
56
66
0
20
13
1.24
51448794--51449111
88
3.6
88
88
2
426
27
23
24
24
2.00
51448828--51448979
44
3.5
44
69
15
127
28
22
23
25
1.99
51448876--51449127
44
5.7
45
66
16
123
26
25
24
23
2.00
51449047--51449186
45
3.1
44
77
9
149
30
24
23
22
1.99
51449199--51449571
100
3.7
98
83
5
446
33
22
20
23
1.97
51449208--51449533
50
6.6
50
74
6
261
32
22
20
23
1.98
51449607--51449656
25
2.0
25
84
0
64
36
20
18
26
1.95
51449507--51449865
125
2.9
124
86
3
470
33
21
19
25
1.97
51449948--51450112
44
3.7
44
80
4
143
27
20
26
26
1.99
51449996--51450156
44
3.7
44
81
5
173
26
18
25
29
1.98
51451808--51451843
18
1.9
19
94
5
65
44
5
0
50
1.25
51452081--51452119
2
19.5
2
89
0
60
46
5
0
48
1.24
51473352--51473398
19
2.5
19
86
6
60
70
4
14
10
1.31
51475300--51475331
2
16.5
2
93
6
57
53
0
0
46
1.00
51475299--51475329
15
2.1
15
100
0
62
54
0
0
45
0.99
51477232--51477306
38
2.0
38
82
10
91
44
2
2
50
1.30
51482627--51482655
3
9.7
3
100
0
58
34
34
0
31
1.58
51486995--51487075
39
2.1
39
86
11
114
50
2
0
46
1.14
51488046--51488219
89
2.0
88
93
1
294
30
14
20
35
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51489323--51489374
27
1.9
27
100
0
104
15
25
32
26
1.95
51489324--51489551
102
2.2
102
93
1
386
20
21
28
29
1.98
51489488--51489624
42
3.5
42
72
17
139
22
18
27
32
1.97
51489451--51489661
75
2.8
75
87
1
307
22
19
27
30
1.98
51493249--51493278
15
2.1
15
93
6
53
50
0
0
50
1.00
51502773--51502943
84
2.0
85
97
1
326
32
8
18
40
1.81
51508695--51508741
3
15.7
3
90
0
76
72
0
27
0
0.85
51508691--51508744
9
6.4
9
81
14
62
75
0
24
0
0.80
51510079--51510184
43
2.4
44
85
3
133
26
17
25
30
1.98
51510261--51510695
45
9.7
45
89
2
509
27
20
25
26
1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226