Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 ID=Chr09-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  70713020

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  134  of  226  ( 27023 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44758218--44758267
26
1.9
26
91
0
82
34
16
10
40
1.81
44764646--44764697
26
2.0
26
92
0
86
38
15
7
38
1.76
44770502--44770553
26
2.0
26
92
0
86
42
11
5
40
1.65
44772617--44772666
26
1.9
26
95
0
91
36
14
8
42
1.74
44774772--44774818
24
1.9
25
86
4
69
34
2
29
34
1.70
44776190--44776241
26
2.0
26
96
0
95
34
13
7
44
1.72
44778312--44778363
26
2.0
26
96
0
95
34
13
7
44
1.72
44780531--44780580
26
1.9
26
100
0
100
36
12
6
46
1.66
44782650--44782699
26
1.9
26
100
0
100
36
12
6
46
1.66
44784771--44784822
26
2.0
26
96
0
95
38
11
9
40
1.74
44785732--44785783
26
2.0
26
96
0
95
38
11
9
40
1.74
44788879--44788928
26
1.9
26
95
0
91
36
10
6
48
1.61
44791089--44791140
26
2.0
26
96
0
95
40
11
5
42
1.65
44796490--44796541
26
2.0
26
96
0
95
38
11
9
40
1.74
44797452--44797501
26
1.9
26
87
0
73
36
14
6
44
1.69
44799498--44799549
26
2.0
26
96
0
95
40
11
5
42
1.65
44805442--44805478
19
1.9
19
88
0
56
48
5
0
45
1.25
44806290--44806333
20
2.1
21
84
12
56
52
18
2
27
1.57
44806971--44807051
38
2.1
38
90
0
126
19
14
8
56
1.64
44816307--44816350
4
11.0
4
85
0
52
22
6
2
68
1.25
44819421--44819464
3
14.7
3
100
0
88
34
0
0
65
0.93
44822142--44822185
22
2.0
22
86
4
61
59
2
2
36
1.23
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44830969--44831025
18
3.2
18
79
0
69
19
50
3
26
1.63
44830975--44831032
24
2.4
24
82
0
62
18
51
3
25
1.62
44836366--44836390
7
3.6
7
100
0
50
12
0
0
88
0.53
44837194--44837221
2
14.0
2
100
0
56
50
0
0
50
1.00
44837201--44837417
108
2.0
108
92
1
364
32
8
20
37
1.84
44837990--44838218
113
2.0
113
100
0
458
21
16
21
40
1.91
44842556--44842690
40
3.4
39
74
7
130
33
26
14
25
1.95
44855201--44855225
8
3.1
8
100
0
50
52
12
0
36
1.39
44868543--44868598
21
2.5
22
72
16
53
21
16
8
53
1.69
44881134--44881184
14
3.5
14
73
19
50
7
7
7
76
1.16
44881175--44881217
11
3.9
11
81
0
59
23
16
9
51
1.73
44881175--44881216
22
1.9
22
90
0
66
23
16
7
52
1.68
44887016--44887165
26
6.0
26
67
13
84
35
20
24
20
1.96
44891958--44891985
14
2.0
14
100
0
56
21
21
7
50
1.72
44894557--44894651
25
3.9
24
70
12
68
33
20
23
23
1.97
44894617--44894664
24
2.0
25
91
4
80
37
22
22
16
1.94
44895103--44895133
16
1.9
16
93
0
53
41
12
0
45
1.42
44895662--44895689
13
2.2
13
100
0
56
14
14
0
71
1.15
44896162--44896279
59
2.0
59
89
0
182
41
17
20
20
1.90
44907161--44907195
18
1.9
18
94
0
61
48
0
42
8
1.33
44907822--44907884
18
3.4
18
69
4
63
38
3
6
52
1.43
44907810--44907884
37
2.0
37
97
0
141
36
5
8
50
1.54
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44919174--44919227
6
9.0
6
100
0
108
33
0
16
50
1.46
44927334--44927499
58
2.8
59
83
4
176
47
7
6
37
1.59
44929423--44929461
20
1.9
21
84
5
53
66
2
2
28
1.18
44929396--44929467
30
2.4
30
77
13
85
66
1
2
29
1.14
44929717--44929791
32
2.3
32
93
0
132
29
22
18
29
1.98
44932563--44932594
16
2.0
16
93
0
55
25
15
0
59
1.36
44937576--44937622
12
3.8
12
80
5
58
40
4
4
51
1.41
44937573--44937622
25
2.0
25
96
0
91
38
8
6
48
1.57
44940477--44940721
23
10.8
23
84
1
325
18
19
22
39
1.93
44940476--44940721
46
5.4
46
92
1
372
19
19
22
39
1.93
44941448--44941568
47
2.6
48
81
2
138
27
16
26
29
1.97
44957984--44958078
48
2.0
48
100
0
190
35
25
9
29
1.87
44969485--44969545
23
2.6
24
79
7
72
60
1
3
34
1.23
44969809--44969871
25
2.7
22
73
20
56
46
1
4
47
1.33
44969890--44969934
23
2.0
23
86
8
65
28
0
4
66
1.11
44976199--44976279
35
2.3
35
93
0
135
41
33
12
12
1.80
44980129--44980161
16
2.0
17
88
5
50
45
0
6
48
1.27
44985281--44985358
20
3.9
20
72
0
66
35
17
33
12
1.88
44988978--44989031
22
2.5
22
84
3
65
14
22
18
44
1.86
44990808--44990836
15
1.9
15
100
0
58
68
0
0
31
0.89
44991481--44991552
29
2.5
29
80
8
76
33
5
4
56
1.41
44998467--44998597
32
4.3
31
72
21
107
22
13
12
51
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44998586--44998656
31
2.4
31
83
9
85
18
14
15
52
1.75
45002809--45002850
21
2.0
21
85
0
57
38
0
19
42
1.51
45005946--45005980
17
1.9
19
88
11
56
28
8
14
48
1.73
45007181--45007243
30
2.1
30
93
0
108
57
15
4
22
1.57
45007817--45008290
238
2.0
239
83
3
598
37
20
15
27
1.92
45008620--45008658
13
3.0
13
84
0
51
28
35
23
12
1.91
45008931--45008959
2
14.5
2
100
0
58
48
0
0
51
1.00
45009581--45009725
25
5.8
25
76
10
111
33
22
25
19
1.97
45009904--45009951
24
2.0
25
83
4
62
31
14
31
22
1.94
45010809--45010843
18
2.0
17
88
5
52
31
2
0
65
1.07
45018810--45018892
27
3.2
26
75
18
84
33
22
27
15
1.95
45027001--45027090
39
2.2
41
88
3
130
52
7
1
38
1.38
45027192--45027236
22
2.0
23
83
12
58
46
0
0
53
1.00
45033628--45033658
12
2.6
12
94
0
53
41
0
9
48
1.36
45033628--45033658
14
2.2
14
94
0
53
41
0
9
48
1.36
45043833--45043875
19
2.3
19
100
0
86
30
0
9
60
1.28
45044072--45044105
15
2.2
16
89
5
52
64
5
2
26
1.30
45044211--45044250
20
2.0
20
90
0
62
55
0
0
45
0.99
45049321--45049376
24
2.3
23
82
14
69
55
17
3
23
1.58
45052484--45052523
13
3.1
13
92
0
71
22
10
15
52
1.71
45055967--45056015
24
2.1
23
85
7
64
55
14
4
26
1.57
45078586--45078625
20
2.0
20
100
0
80
35
0
10
55
1.34
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45078592--45078637
20
2.2
20
84
3
56
36
0
8
54
1.32
45078939--45079010
31
2.4
30
79
9
83
43
9
9
37
1.71
45078987--45079042
27
2.2
25
83
6
67
50
10
3
35
1.55
45079894--45079918
11
2.3
11
100
0
50
52
0
0
48
1.00
45080068--45080099
11
2.9
11
95
0
55
21
37
21
18
1.94
45080584--45080609
3
8.7
3
100
0
52
0
30
0
69
0.89
45083887--45083943
18
2.9
19
82
10
62
59
0
7
33
1.24
45084001--45084055
9
6.0
9
79
12
58
63
1
0
34
1.05
45083992--45084056
19
3.4
20
75
16
57
66
1
0
32
1.01
45083992--45084048
27
2.1
28
86
3
80
66
1
0
31
1.02
45088332--45088725
31
12.8
30
69
12
167
28
7
20
42
1.80
45088335--45088687
184
1.9
184
94
1
618
28
7
20
42
1.80
45101579--45101698
41
2.9
41
82
8
145
36
15
15
31
1.90
45102040--45102104
31
2.1
31
91
0
103
15
40
21
23
1.91
45102047--45102119
31
2.4
31
83
4
85
17
41
20
20
1.91
45102089--45102150
25
2.5
25
83
0
70
20
37
19
22
1.95
45102879--45102912
12
2.8
12
100
0
68
50
0
17
32
1.47
45103176--45103220
21
2.1
21
95
0
81
42
8
11
37
1.72
45104478--45104615
66
2.1
65
83
5
170
41
18
26
14
1.88
45104674--45104725
25
2.0
25
88
7
77
38
7
5
48
1.56
45104802--45104859
27
2.1
27
84
12
75
53
0
3
43
1.17
45113569--45113627
29
2.0
29
96
0
109
35
25
6
32
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45114559--45114798
118
2.0
118
98
0
462
31
12
22
32
1.92
45117339--45117500
54
3.0
54
76
3
139
19
28
28
23
1.98
45117457--45117488
12
2.6
13
85
14
50
6
25
43
25
1.77
45124776--45124835
21
2.9
21
94
0
102
30
11
13
45
1.79
45125151--45125187
2
18.5
2
94
0
65
54
0
0
45
1.00
45127886--45128067
45
4.1
45
83
4
226
34
26
16
21
1.95
45137716--45137774
2
29.5
2
100
0
118
49
0
0
50
1.00
45138183--45138211
15
1.9
15
100
0
58
62
0
0
37
0.96
45150638--45150683
20
2.3
20
100
0
92
17
10
19
52
1.74
45151195--45151298
13
8.0
13
81
4
120
34
23
7
34
1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226