Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 ID=Chr09-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  70713020

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  149  of  226  ( 27023 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48989301--48989388
40
2.2
41
81
8
108
56
1
6
35
1.33
48993030--48993137
54
2.0
54
96
0
198
28
21
20
29
1.98
48997305--48997380
32
2.4
32
86
2
100
52
2
5
39
1.38
49003158--49003190
17
1.9
17
93
0
57
0
3
24
72
0.98
49003678--49003861
44
4.2
45
84
5
193
27
23
19
29
1.98
49003704--49004050
44
7.9
44
78
6
312
27
21
19
31
1.98
49003753--49004050
133
2.2
133
80
4
316
26
22
19
31
1.98
49003712--49004046
177
1.9
177
80
3
388
27
22
20
30
1.98
49004059--49004459
45
9.0
45
75
8
361
29
25
16
27
1.97
49004069--49004461
134
2.9
132
83
6
445
30
25
17
27
1.97
49004583--49004848
44
6.0
44
78
5
257
24
23
22
30
1.99
49004583--49004848
133
2.0
134
85
2
356
24
23
22
30
1.99
49004581--49004848
89
3.0
90
80
6
294
24
23
22
29
1.99
49010598--49010740
74
2.0
72
85
2
196
33
16
19
30
1.94
49011276--49011300
2
12.5
2
100
0
50
52
0
0
48
1.00
49012064--49012101
20
1.9
20
84
10
51
71
0
10
18
1.14
49012511--49012544
17
2.0
17
94
0
59
0
2
29
67
1.05
49019364--49019420
3
18.7
3
83
3
69
38
1
1
57
1.19
49019762--49019824
12
5.1
12
75
21
67
39
1
3
55
1.25
49023902--49023971
10
7.3
10
77
7
65
55
0
5
38
1.24
49023903--49023971
19
3.6
18
75
9
66
55
0
5
39
1.24
49023902--49023990
38
2.3
38
83
7
101
57
1
6
34
1.33
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49023939--49023990
19
2.8
19
77
11
54
63
1
5
28
1.28
49030446--49030564
60
2.0
60
100
0
238
30
5
30
34
1.79
49032960--49033007
2
24.5
2
87
4
71
47
4
0
47
1.21
49036089--49036151
32
2.0
32
83
0
81
50
6
6
36
1.53
49039968--49039997
13
2.3
13
100
0
60
46
10
6
36
1.64
49042559--49042594
3
11.7
3
94
5
63
33
0
0
66
0.92
49042895--49042928
15
2.4
14
90
5
50
38
5
2
52
1.41
49049607--49049647
21
2.0
21
85
9
57
60
4
0
34
1.18
49050129--49050172
18
2.5
17
82
10
52
27
0
6
65
1.17
49055198--49055328
30
4.4
30
80
6
124
32
19
3
44
1.69
49055226--49055328
30
3.5
30
84
7
131
33
21
3
40
1.71
49055757--49055781
7
3.6
7
100
0
50
56
32
12
0
1.36
49055942--49055987
20
2.4
19
81
3
56
65
0
34
0
0.93
49056113--49056169
11
5.4
11
73
23
50
80
1
14
3
0.92
49056074--49056148
26
2.7
26
76
13
71
72
1
25
1
1.01
49056342--49056377
19
1.9
18
88
5
54
25
2
2
69
1.15
49056599--49056643
21
2.1
21
88
8
65
48
8
4
37
1.55
49056885--49057052
35
4.7
33
72
23
110
31
13
9
45
1.75
49056880--49056999
18
6.8
16
72
21
64
30
14
10
44
1.79
49056885--49057440
17
30.5
18
68
15
225
31
12
10
45
1.76
49057067--49057110
22
2.0
22
90
0
70
22
9
9
59
1.56
49057162--49057211
18
2.9
17
77
11
57
26
8
10
56
1.60
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49057129--49057303
92
1.9
92
81
6
212
33
12
10
44
1.75
49057225--49057262
20
2.0
20
89
5
60
39
13
7
39
1.73
49057294--49057335
18
2.3
19
84
8
52
33
14
7
45
1.72
49057258--49057402
52
2.8
52
77
9
127
29
14
12
43
1.82
49057383--49057442
19
3.2
19
85
4
77
36
15
10
38
1.80
49069295--49069847
75
7.3
75
84
7
602
27
17
19
35
1.94
49069563--49069927
151
2.4
152
82
5
350
29
17
20
32
1.95
49070191--49070335
30
4.8
30
79
7
136
36
20
2
40
1.64
49070232--49070349
30
4.0
29
82
8
98
37
24
2
35
1.69
49071053--49071134
11
7.4
10
74
16
65
73
0
25
1
0.91
49071053--49071148
10
8.6
11
70
20
58
73
1
22
2
0.99
49071053--49071135
27
3.1
26
77
14
73
73
0
25
1
0.90
49071597--49071640
20
2.1
21
91
4
72
47
11
4
36
1.60
49071896--49072501
17
33.4
18
68
19
216
31
14
10
43
1.79
49072078--49072122
23
2.0
23
86
0
63
24
8
8
57
1.57
49072101--49072145
18
2.5
18
85
0
63
37
13
6
42
1.70
49072106--49072254
35
4.1
35
74
15
97
32
14
10
42
1.78
49072106--49072501
52
7.4
51
69
16
177
31
14
11
42
1.81
49072342--49072469
35
3.6
35
75
13
109
30
14
12
42
1.82
49072412--49072472
19
3.2
19
86
4
79
36
14
9
39
1.80
49076255--49076302
2
24.0
2
100
0
96
50
0
0
50
1.00
49090853--49091025
72
2.4
72
79
1
177
32
21
17
28
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49093619--49093659
21
2.0
21
85
9
57
65
9
2
21
1.34
49093641--49093706
27
2.5
26
83
7
89
60
9
0
30
1.27
49095610--49095674
24
2.7
24
80
0
67
44
16
13
24
1.85
49098211--49098252
20
2.1
20
100
0
84
23
9
9
57
1.60
49115296--49115362
22
2.9
22
76
14
64
1
32
0
65
1.02
49115300--49115362
21
2.6
25
71
23
62
1
34
0
63
1.04
49115308--49115356
21
2.3
21
80
13
64
2
30
0
67
1.02
49115341--49115371
6
5.2
6
92
0
53
0
45
0
54
0.99
49117909--49117961
19
2.7
19
79
2
52
35
13
11
39
1.80
49119713--49119742
15
2.0
15
100
0
60
26
20
13
40
1.89
49126072--49126106
2
17.5
2
100
0
70
0
48
0
51
1.00
49135630--49135871
83
3.0
82
90
4
363
26
17
9
45
1.80
49135731--49135871
75
1.9
75
90
0
228
26
17
9
45
1.80
49146570--49146613
11
4.2
11
85
11
65
18
6
27
47
1.73
49146583--49146657
9
8.2
9
88
8
107
21
10
29
38
1.87
49146575--49146659
20
4.5
20
85
8
117
21
9
29
40
1.84
49146583--49146656
26
2.7
26
85
6
103
21
10
29
37
1.88
49147248--49147284
19
1.9
19
89
10
58
27
45
0
27
1.54
49157774--49157807
3
11.3
3
100
0
68
67
0
0
32
0.91
49157797--49157843
18
2.6
18
96
0
85
48
0
12
38
1.41
49159422--49159461
16
2.5
16
91
0
62
30
0
25
45
1.54
49159433--49159485
16
3.2
18
82
12
60
28
0
20
50
1.48
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49160774--49160829
28
2.0
29
86
6
80
48
5
7
39
1.54
49160954--49160996
16
2.7
16
82
7
52
41
0
4
53
1.21
49162469--49162533
11
5.6
11
74
18
53
44
1
1
52
1.19
49162545--49162603
31
1.9
31
85
0
82
50
0
3
45
1.18
49165803--49166238
231
1.9
231
96
0
800
24
12
24
37
1.91
49166329--49166355
14
1.9
14
100
0
54
51
7
18
22
1.70
49170981--49171015
9
3.9
9
88
0
52
45
0
2
51
1.16
49171225--49171260
18
1.9
19
88
5
56
38
2
0
58
1.13
49173649--49173673
12
2.1
12
100
0
50
24
48
0
28
1.52
49174625--49174657
14
2.2
16
89
10
52
57
0
9
33
1.30
49178518--49178557
19
2.1
19
95
0
71
52
2
10
35
1.48
49192642--49192685
3
14.7
3
100
0
88
34
0
0
65
0.93
49193413--49194052
312
2.1
310
82
4
770
33
11
11
43
1.77
49204125--49204150
6
4.3
6
100
0
52
15
15
69
0
1.20
49212372--49212722
126
2.8
125
82
3
411
30
13
21
34
1.92
49215755--49215969
116
1.9
116
96
0
403
42
9
9
38
1.70
49215975--49216691
23
29.7
23
74
18
577
28
2
23
45
1.64
49215966--49216056
28
3.4
28
82
14
111
29
3
24
42
1.70
49215978--49216636
51
13.7
47
79
14
597
28
2
23
45
1.65
49216283--49216420
28
5.2
29
75
20
85
27
1
25
45
1.62
49216271--49216368
50
1.9
51
93
2
171
26
0
25
47
1.52
49215979--49216636
220
3.0
219
93
3
1113
28
2
23
45
1.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49216484--49216649
50
3.4
49
79
15
182
26
0
25
48
1.52
49216604--49216671
30
2.3
30
86
0
100
20
0
26
52
1.46
49216584--49216689
53
2.0
53
86
0
149
23
0
26
50
1.50
49217205--49217239
18
1.9
18
88
0
52
37
8
31
22
1.85
49217886--49217910
7
3.6
7
100
0
50
56
16
0
28
1.41
49219102--49219157
22
2.5
22
94
2
94
39
0
30
30
1.57
49219114--49219176
10
5.8
11
75
20
62
42
0
34
22
1.54
49226441--49226711
9
32.1
9
72
14
177
29
2
21
47
1.63
49226439--49226658
25
8.7
25
82
5
237
29
2
22
45
1.64
49226434--49226674
16
14.4
16
72
13
143
29
2
21
46
1.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226