Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 ID=Chr09-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  70713020

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  226  of  226  ( 27023 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
70605918--70606137
114
1.9
114
95
0
395
32
14
20
32
1.93
70606799--70606858
21
2.8
22
80
5
70
21
25
18
35
1.96
70606799--70606858
22
2.8
21
77
5
66
21
25
18
35
1.96
70617219--70617257
20
2.0
20
84
0
51
33
10
7
48
1.66
70620837--70620986
40
3.6
40
84
8
185
32
2
1
64
1.14
70621978--70622016
4
9.2
4
97
2
60
23
0
0
76
0.78
70629753--70629792
5
8.0
5
100
0
80
60
0
0
40
0.97
70636356--70636462
53
2.0
53
100
0
214
29
16
16
36
1.92
70644440--70644474
17
2.1
17
94
0
61
17
17
45
20
1.85
70650786--70650837
23
2.3
23
100
0
104
28
15
17
38
1.90
70667363--70667425
27
2.2
29
77
5
67
50
28
9
11
1.69
70674481--70674543
27
2.2
29
77
5
67
50
28
9
11
1.69
70676587--70676680
38
2.5
38
91
0
152
27
20
19
32
1.96
70677638--70677672
17
2.1
17
100
0
70
25
0
5
68
1.11
70678576--70678633
18
3.0
19
76
14
57
44
0
1
53
1.10
70678589--70678646
21
2.6
22
81
8
64
43
0
3
53
1.17
70683903--70683986
39
2.2
39
88
0
123
23
36
19
20
1.95
70685881--70685914
2
17.0
2
93
0
59
47
50
2
0
1.16
70688137--70688188
21
2.5
21
100
0
104
5
17
32
44
1.72
70690087--70690130
20
2.2
20
83
4
52
15
6
13
63
1.49
70696740--70696823
40
2.1
40
97
0
159
11
11
36
39
1.79
70697688--70697728
21
2.0
21
90
9
66
12
17
21
48
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
70702593--70702627
5
7.4
5
87
12
56
37
0
0
62
0.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226

The End!