genome.fa.s2.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  1  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--60	7	8.7	7	90	3	86	36	63	0	0	0.95
1--56	21	2.8	20	94	5	103	37	62	0	0	0.95
15840--16019	69	2.6	69	89	0	272	34	11	20	34	1.88
15840--16097	69	3.8	69	82	3	254	34	11	20	33	1.88
18874--18958	42	2.0	42	86	0	116	28	24	18	28	1.98
19619--19672	21	2.6	21	90	0	81	25	14	31	27	1.95
20514--20571	28	2.1	28	86	0	80	29	13	6	50	1.68
20577--20778	40	5.0	40	82	4	246	19	0	19	59	1.44
20577--20775	41	4.9	40	80	4	204	20	1	19	59	1.44
20575--20778	79	2.5	81	83	4	252	20	0	19	59	1.44
21688--21740	22	2.4	22	90	0	88	37	30	3	28	1.75
26242--26271	2	15.0	2	100	0	60	50	0	0	50	1.00
26161--26382	111	2.0	110	97	0	417	32	13	14	38	1.85
26350--26384	2	17.5	2	100	0	70	48	0	0	51	1.00
40681--40722	6	7.0	6	94	0	66	30	52	2	14	1.54
42059--42087	2	14.5	2	100	0	58	0	48	0	51	1.00
44872--44901	2	15.0	2	100	0	60	0	50	0	50	1.00
50989--51016	3	9.3	3	100	0	56	67	0	0	32	0.91
51562--51676	58	2.0	57	91	6	180	42	10	24	21	1.84
53469--53493	2	12.5	2	100	0	50	52	0	0	48	1.00
54398--54430	2	16.5	2	100	0	66	48	0	0	51	1.00
55370--55441	29	2.5	29	79	2	83	45	8	31	13	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67027--67073	22	2.1	22	100	0	94	31	27	19	21	1.97
73926--73953	2	14.0	2	100	0	56	50	0	0	50	1.00
73855--74055	101	2.0	100	100	0	393	35	8	16	37	1.81
74027--74054	2	14.0	2	100	0	56	50	0	0	50	1.00
75991--76017	2	13.5	2	100	0	54	48	0	0	51	1.00
81881--81959	40	2.0	40	82	0	95	20	20	21	37	1.94
84046--84084	9	4.3	9	90	0	60	41	23	10	25	1.86
84046--84084	18	2.2	18	95	0	69	41	23	10	25	1.86
87593--87642	2	25.0	2	100	0	100	50	0	0	50	1.00
87688--87731	2	22.0	2	100	0	88	50	0	0	50	1.00
92302--92334	16	2.1	16	94	0	57	57	0	21	21	1.41
92502--92562	23	2.8	21	79	18	70	50	1	0	47	1.10
94598--94622	3	8.3	3	100	0	50	68	0	0	32	0.90
105756--105796	20	2.1	20	90	4	66	58	4	2	34	1.32
107309--107404	39	2.5	39	89	0	138	23	17	11	46	1.81
114353--114388	2	17.5	2	94	5	63	50	0	2	47	1.15
115443--115477	2	17.5	2	100	0	70	48	0	0	51	1.00
121675--121699	4	6.2	4	100	0	50	24	0	0	76	0.80
124721--124747	3	9.0	3	100	0	54	33	0	0	66	0.92
154334--154381	25	2.0	24	83	4	60	14	29	16	39	1.88
167768--167837	34	2.1	34	86	0	95	44	20	14	21	1.86
175063--175098	2	18.0	2	100	0	72	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
194573--194600	2	14.0	2	100	0	56	50	0	50	0	1.00
195243--195288	18	2.6	18	96	0	83	58	10	17	13	1.62
202551--202582	3	10.7	3	93	0	55	0	34	0	65	0.93
203339--203384	2	23.0	2	95	0	83	47	0	2	50	1.13
207008--207056	19	2.5	19	83	3	62	22	6	16	55	1.63
214152--214193	21	2.0	21	81	9	50	23	26	19	30	1.98
229227--229275	24	2.0	24	100	0	98	20	24	8	46	1.77
251710--251861	76	2.0	76	94	0	268	38	9	22	29	1.85
253155--253184	7	4.3	7	100	0	60	0	43	13	43	1.43
277015--277040	2	13.0	2	100	0	52	50	0	50	0	1.00
280796--280825	4	7.5	4	100	0	60	0	0	23	76	0.78
285641--285679	3	13.0	3	94	0	69	0	35	0	64	0.94
285926--285957	2	16.0	2	100	0	64	50	0	0	50	1.00
286266--286300	15	2.3	15	85	0	52	85	2	2	8	0.79
290010--290053	2	22.0	2	100	0	88	50	0	0	50	1.00
307156--307238	40	2.0	41	90	2	132	31	20	14	33	1.93
313509--313534	2	13.0	2	100	0	52	0	0	50	50	1.00
316859--316890	2	16.0	2	100	0	64	50	0	0	50	1.00
317182--317216	2	17.5	2	93	0	61	51	0	0	48	1.00
331343--331386	19	2.4	18	82	10	54	50	6	40	2	1.42
336423--336481	30	2.0	30	89	0	91	28	40	6	23	1.80
354660--354698	14	2.8	14	100	0	78	25	7	23	43	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
357113--357155	22	2.0	22	100	0	86	46	13	27	11	1.78
358392--358421	14	2.1	14	93	0	51	30	6	6	56	1.51
359663--359712	23	2.2	23	96	0	91	40	6	24	30	1.79
372036--372264	107	2.2	106	82	3	273	37	6	11	43	1.68
372009--372284	142	2.0	139	85	5	376	37	6	12	43	1.68
372016--372285	35	7.7	35	80	3	249	37	6	12	42	1.69
378363--378388	13	2.0	13	100	0	52	46	7	7	38	1.61
383290--383321	16	2.0	16	93	0	55	28	0	0	71	0.86
385819--385848	2	15.0	2	100	0	60	50	0	0	50	1.00
386508--386553	23	2.0	23	95	0	83	39	13	10	36	1.79
390899--390944	23	2.0	23	95	0	83	39	13	10	36	1.79
395996--396047	22	2.4	22	76	0	59	34	13	7	44	1.72
399083--399155	29	2.5	29	86	6	94	39	8	12	39	1.73
408130--408185	26	2.2	26	83	0	67	50	10	8	30	1.68
408671--408757	45	1.9	45	97	0	165	31	8	8	52	1.60
411006--411167	57	2.8	54	80	13	155	29	13	12	45	1.80
412251--412300	22	2.3	22	92	0	82	50	4	16	30	1.63
418724--418762	16	2.4	16	86	0	51	38	17	12	30	1.88
431292--431431	70	2.0	69	86	4	192	49	6	12	32	1.65
439111--439149	21	1.9	21	84	5	53	61	0	5	33	1.18
441685--441711	10	2.7	10	100	0	54	33	29	7	29	1.85
446352--446411	23	2.7	24	75	12	65	40	0	1	58	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
448946--449154	84	2.5	84	84	1	276	28	31	22	18	1.97
449604--449646	19	2.2	19	87	4	59	23	16	18	41	1.89
452123--452249	62	2.0	65	89	8	201	37	3	11	48	1.55
454893--454939	23	2.0	23	100	0	94	17	12	29	40	1.86
456606--456633	2	14.0	2	100	0	56	0	50	0	50	1.00
456682--456707	2	13.0	2	100	0	52	0	50	0	50	1.00
456707--456731	2	12.5	2	100	0	50	48	0	0	52	1.00
477607--477697	43	2.1	43	95	0	164	46	5	27	20	1.73
484963--485088	64	2.0	64	90	3	200	42	14	14	29	1.85
492029--492145	58	2.0	58	94	0	207	15	15	20	48	1.81
509442--509867	233	1.8	231	86	5	617	30	23	14	31	1.94
516479--516578	30	3.4	30	73	2	85	40	4	3	53	1.35
516479--516561	29	2.8	29	67	8	69	38	2	2	56	1.25
517633--517685	27	2.0	27	85	7	72	58	0	1	39	1.09
517692--517742	26	2.0	26	88	7	77	39	1	1	56	1.22
523283--523343	1	61.0	1	76	0	59	88	0	0	11	0.51
523285--523344	17	3.5	17	97	0	111	86	0	0	13	0.57
523285--523344	8	7.0	9	85	11	90	86	0	0	13	0.57
523287--523342	25	2.2	25	90	6	87	87	0	0	12	0.54
524267--524300	13	2.6	13	90	9	52	76	0	0	23	0.79
524269--524303	16	2.1	17	89	5	54	77	0	0	22	0.78
524352--524385	8	4.2	8	100	0	68	76	0	0	23	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
531793--531903	50	2.2	50	90	0	168	29	10	16	43	1.82
537296--537346	2	25.5	2	91	0	84	47	0	0	52	1.00
544218--544300	29	3.0	28	74	8	80	74	2	1	21	1.00
549248--549351	52	1.9	53	82	7	129	37	3	0	57	1.23
550505--550535	15	2.1	15	93	0	53	64	0	6	29	1.18
556419--556664	81	3.0	80	82	5	298	43	8	4	43	1.55
556925--556957	17	1.9	17	88	11	50	36	6	27	30	1.81
557042--557107	33	2.0	33	96	0	123	42	10	15	31	1.81
568301--568362	23	2.9	21	73	19	56	43	1	4	50	1.33
568846--568881	2	18.0	2	100	0	72	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106