genome.fa.s2.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  7  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3242652--3242701	14	3.5	15	77	22	54	72	0	2	26	0.96
3257612--3257656	2	22.5	2	93	0	72	51	2	2	44	1.26
3262018--3262056	15	2.6	15	95	0	69	41	7	2	48	1.45
3270032--3270076	23	2.0	23	82	8	56	53	2	2	42	1.25
3277232--3277290	9	6.6	9	74	0	55	23	13	45	16	1.83
3277233--3277290	18	3.2	18	85	0	71	24	13	46	15	1.82
3312818--3312885	33	2.1	33	85	0	91	26	11	36	25	1.90
3312841--3312951	57	1.9	57	88	0	168	23	9	39	27	1.86
3312898--3313104	72	2.9	72	89	2	292	22	12	40	25	1.88
3313046--3313155	51	2.2	50	90	3	166	22	11	42	22	1.86
3312974--3313227	123	2.1	123	94	0	445	22	12	40	24	1.88
3313097--3313500	72	5.6	72	94	2	679	22	12	39	24	1.89
3312836--3313299	195	2.3	194	87	5	648	23	12	39	25	1.89
3313163--3313602	105	4.1	106	75	12	443	22	12	39	25	1.90
3313307--3313677	177	2.1	176	88	5	550	23	11	38	26	1.89
3313477--3313671	72	2.7	72	89	3	182	25	11	36	27	1.90
3315865--3315943	38	2.1	38	100	0	158	27	12	22	36	1.91
3320750--3320812	32	2.0	32	81	12	76	44	12	0	42	1.42
3320665--3320866	105	1.9	103	92	2	341	45	13	3	36	1.63
3324994--3325051	30	1.9	30	92	0	98	36	3	5	55	1.39
3325296--3325365	28	2.5	28	95	0	122	58	2	10	28	1.45
3325287--3325349	28	2.4	24	80	16	72	50	3	11	34	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3325296--3325378	28	3.0	28	89	3	96	55	2	8	33	1.43
3330307--3330366	22	2.8	22	92	7	97	0	0	91	6	0.38
3330315--3330373	15	3.8	16	86	8	86	0	1	93	5	0.41
3330315--3330373	31	1.9	31	92	0	100	0	1	93	5	0.41
3330315--3330366	1	52.0	1	92	0	86	0	0	96	3	0.24
3369554--3369600	22	2.1	22	100	0	94	23	12	17	46	1.82
3379932--3379964	11	2.8	12	86	13	50	45	0	0	54	0.99
3384764--3384818	2	27.0	2	88	3	74	47	5	0	45	1.26
3384862--3384900	2	19.5	2	83	0	51	53	0	2	43	1.14
3389606--3389632	7	3.9	7	100	0	54	59	11	14	14	1.62
3389992--3390036	23	1.9	23	86	4	63	53	0	0	46	1.00
3391343--3391373	15	2.0	16	93	6	55	51	6	32	9	1.60
3393534--3393576	17	2.5	17	76	0	50	2	4	11	81	0.93
3397868--3397908	21	2.0	21	90	9	66	53	0	34	12	1.38
3406049--3406240	48	3.9	48	79	11	210	19	6	23	50	1.71
3407380--3407446	25	2.5	28	83	9	86	53	1	1	43	1.19
3414908--3415013	54	2.0	54	88	0	158	19	9	20	50	1.75
3419731--3419832	53	1.9	52	96	2	186	32	45	6	15	1.73
3421975--3422000	13	2.0	13	100	0	52	46	0	0	53	1.00
3438122--3438147	13	2.0	13	100	0	52	30	0	0	69	0.89
3439466--3439550	11	7.5	11	70	7	62	77	0	18	3	0.91
3439447--3439494	24	2.1	23	84	7	62	77	0	18	4	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3439475--3439557	16	5.2	16	70	12	55	75	0	20	3	0.94
3439443--3439538	25	3.9	24	69	21	65	73	0	22	3	0.97
3439525--3439558	13	2.5	14	90	4	52	82	0	11	5	0.83
3455944--3456007	29	2.2	29	88	0	92	37	7	7	46	1.62
3455945--3456151	82	2.5	81	78	11	215	34	12	10	42	1.78
3456005--3456049	24	1.9	23	81	4	54	28	13	17	40	1.88
3456051--3456114	26	2.5	26	75	14	69	29	14	9	46	1.75
3455941--3456114	30	6.2	28	66	17	85	32	11	10	44	1.75
3469192--3469269	35	2.2	36	84	6	97	3	6	14	75	1.14
3471797--3471887	21	4.2	21	73	14	60	43	19	7	28	1.78
3471969--3472041	21	3.5	21	75	3	58	43	26	6	23	1.78
3472047--3472152	21	5.1	21	71	8	56	48	23	3	24	1.68
3472031--3472153	62	2.0	63	82	7	153	46	23	4	25	1.72
3472142--3472199	20	2.8	20	78	2	62	43	20	5	31	1.74
3472736--3472812	33	2.3	34	95	2	138	25	10	12	50	1.72
3474720--3474765	17	2.6	18	87	12	69	41	0	4	54	1.20
3474719--3474765	18	2.6	18	83	9	60	40	0	4	55	1.19
3489158--3489196	20	2.0	20	90	10	62	48	0	0	51	1.00
3503821--3503880	31	1.9	31	82	0	75	31	10	11	46	1.73
3517149--3517191	21	2.0	21	95	0	77	9	23	37	30	1.86
3531739--3531763	12	2.1	12	100	0	50	60	8	8	24	1.52
3543327--3543403	35	2.2	35	90	0	127	42	20	19	16	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3543371--3543445	26	2.9	26	97	0	141	36	24	22	17	1.95
3543725--3543794	29	2.4	28	81	9	86	20	27	8	44	1.80
3544014--3544038	13	1.9	13	100	0	50	20	32	0	48	1.50
3552769--3552807	18	2.2	18	90	0	60	0	41	5	53	1.23
3554239--3554265	2	13.5	2	100	0	54	0	48	0	51	1.00
3561361--3561385	3	8.3	3	100	0	50	36	0	32	32	1.58
3562037--3562085	2	24.5	2	100	0	98	48	0	0	51	1.00
3590886--3590920	12	2.9	12	95	0	61	0	62	0	37	0.95
3590886--3590920	18	1.9	18	94	0	61	0	62	0	37	0.95
3591049--3591081	6	5.7	6	89	3	50	18	12	15	54	1.71
3592301--3592354	21	2.7	20	86	8	74	33	5	5	55	1.46
3592427--3592476	18	2.8	18	75	3	57	74	0	0	26	0.83
3592423--3592483	28	2.1	29	87	3	88	65	0	0	34	0.93
3592431--3592491	28	2.2	28	82	2	79	65	0	0	34	0.93
3594394--3594463	23	3.1	22	70	13	61	41	2	2	52	1.31
3594503--3594586	11	8.0	11	71	17	54	50	0	3	46	1.19
3595099--3595137	19	2.1	19	90	0	60	33	0	7	58	1.26
3610529--3610594	34	1.9	34	84	6	89	39	21	10	28	1.86
3614023--3614067	18	2.6	18	82	3	56	37	13	13	35	1.84
3614122--3614177	26	2.2	24	82	17	69	53	1	1	42	1.21
3614149--3614182	16	2.2	16	94	5	61	52	0	0	47	1.00
3616983--3617019	2	18.5	2	100	0	74	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3655518--3655561	18	2.5	17	78	7	52	47	4	0	47	1.22
3656999--3657023	2	12.5	2	100	0	50	0	48	0	52	1.00
3665272--3665525	125	2.0	125	96	0	463	37	19	14	28	1.91
3682100--3682273	90	1.9	90	88	2	260	24	9	45	19	1.80
3682101--3682297	90	2.2	90	84	1	252	23	11	45	18	1.82
3685525--3686105	323	1.8	322	84	4	803	21	14	20	43	1.87
3693355--3693548	93	2.1	93	93	4	327	47	0	6	45	1.27
3701613--3701638	2	13.0	2	100	0	52	50	0	0	50	1.00
3701959--3702154	97	2.0	98	93	2	333	43	5	6	44	1.52
3705149--3705189	9	4.4	9	87	3	55	70	0	0	29	0.87
3734615--3734656	20	2.1	20	86	0	57	50	0	16	33	1.46
3736049--3736082	18	1.9	17	88	5	50	41	11	5	41	1.66
3737920--3737972	26	2.1	25	85	3	70	37	28	9	24	1.86
3756749--3756804	13	4.4	13	71	13	53	57	10	5	26	1.54
3757715--3757763	23	2.1	23	100	0	98	34	28	12	24	1.91
3757724--3758044	26	13.0	26	80	10	316	37	25	12	25	1.90
3757724--3758040	74	4.3	74	86	4	399	36	25	12	25	1.91
3757820--3758044	100	2.3	98	83	6	274	38	24	11	25	1.88
3757724--3758044	48	6.5	49	76	13	268	37	25	12	25	1.90
3758125--3758157	17	1.9	17	93	0	57	36	9	21	33	1.85
3758477--3758524	22	2.2	22	100	0	96	39	12	31	16	1.86
3773398--3773463	31	2.1	31	81	10	73	42	3	1	53	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3773453--3773480	14	2.0	14	100	0	56	35	0	0	64	0.94
3779859--3779911	22	2.4	22	96	0	97	32	15	18	33	1.92
3780519--3780582	28	2.4	27	85	10	71	43	1	3	51	1.26
3780515--3780916	150	2.6	156	85	4	541	39	1	3	54	1.30
3780831--3780889	27	2.1	28	87	3	84	42	1	3	52	1.28
3780781--3781032	118	2.2	114	86	6	345	37	2	4	55	1.34
3781013--3781104	34	2.6	34	75	14	96	44	3	0	52	1.17
3781122--3781208	28	3.1	28	88	1	122	43	1	2	52	1.21
3781205--3781363	72	2.2	72	82	6	194	38	3	2	55	1.29
3782391--3782458	25	2.7	25	84	11	102	57	1	0	41	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106