genome.fa.s2.2.7.7.80.10.50.1000.105.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  105  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40482839--40482869	13	2.5	12	90	10	53	74	3	0	22	0.96
40482947--40482984	8	4.4	9	83	12	53	23	0	0	76	0.79
40482947--40482984	17	2.2	17	95	0	67	23	0	0	76	0.79
40485504--40485535	2	16.5	2	93	6	57	50	0	0	50	1.00
40489688--40489745	2	29.0	2	96	0	107	50	1	0	48	1.11
40495599--40495631	6	5.5	6	100	0	66	33	0	66	0	0.92
40495841--40495899	29	2.0	30	86	3	84	38	6	1	52	1.38
40498820--40498865	23	2.2	22	85	14	62	36	6	0	56	1.25
40499027--40499087	32	1.9	32	82	0	77	40	3	1	54	1.27
40505536--40505612	36	2.2	35	81	6	86	48	11	7	32	1.68
40507525--40507579	22	2.5	22	96	0	101	12	18	25	43	1.85
40507952--40508000	22	2.2	22	85	0	62	26	8	22	42	1.81
40508011--40508068	21	2.7	22	83	5	82	18	6	29	44	1.76
40508101--40508207	23	4.4	24	80	9	94	38	26	10	25	1.88
40508147--40508402	26	10.4	26	73	13	179	37	25	12	25	1.91
40508149--40508424	99	2.9	95	82	4	331	37	25	12	24	1.91
40508392--40508451	21	2.9	21	87	9	95	38	28	15	18	1.91
40509051--40509084	15	2.4	14	85	5	50	55	5	32	5	1.48
40516676--40516706	14	2.2	14	100	0	62	38	25	6	29	1.81
40525152--40525188	2	18.5	2	100	0	74	51	0	0	48	1.00
40525265--40525551	144	2.0	145	84	3	382	37	10	11	39	1.77
40542515--40542545	15	2.1	15	100	0	62	38	22	19	19	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40549867--40549955	44	2.0	44	82	8	110	40	2	7	49	1.44
40560417--40560462	22	2.1	22	91	0	74	28	13	4	54	1.57
40601172--40601208	7	5.1	7	87	6	56	86	0	10	2	0.67
40601171--40601208	11	3.5	11	82	3	51	86	0	10	2	0.66
40601174--40601203	15	1.9	16	93	6	53	86	0	10	3	0.67
40624966--40625052	31	2.9	30	71	8	79	42	5	1	50	1.33
40655783--40655807	2	12.5	2	100	0	50	52	0	0	48	1.00
40676743--40676817	38	2.0	38	86	0	105	25	16	18	40	1.91
40678100--40678143	13	3.1	14	87	9	63	2	43	2	52	1.26
40680268--40680324	24	2.4	24	80	11	64	36	0	3	59	1.14
40693289--40693316	5	5.6	5	100	0	56	82	0	17	0	0.68
40696249--40696356	54	2.1	49	88	8	153	37	13	18	30	1.90
40703278--40703308	14	2.1	15	94	5	55	0	22	3	74	0.96
40710174--40710214	20	2.1	20	86	13	59	41	2	51	4	1.36
40712846--40712883	16	2.3	18	86	13	55	26	2	5	65	1.27
40714535--40714574	18	2.2	18	100	0	80	17	5	37	40	1.72
40722155--40722190	16	2.2	16	100	0	72	52	5	0	41	1.24
40722150--40722190	16	2.3	19	72	28	52	51	4	2	41	1.36
40722271--40722322	17	2.8	19	71	14	54	30	1	1	65	1.14
40724545--40724681	54	2.5	55	89	4	199	40	5	47	7	1.53
40724603--40724681	24	3.0	24	70	19	77	41	3	49	5	1.43
40724546--40724729	54	3.4	52	81	10	176	39	4	47	7	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40746657--40746695	20	1.9	20	84	5	51	33	5	7	53	1.51
40752935--40753007	31	2.4	29	75	16	69	56	6	2	34	1.40
40754950--40755001	23	2.2	24	89	3	79	57	5	11	25	1.55
40765411--40765455	22	2.0	22	91	0	72	51	8	17	22	1.73
40773329--40773386	23	2.5	24	88	2	82	43	10	12	34	1.76
40788302--40788328	2	13.5	2	100	0	54	0	51	0	48	1.00
40805261--40805286	2	13.0	2	100	0	52	0	50	0	50	1.00
40814378--40814568	27	7.2	27	76	9	151	10	20	36	32	1.87
40814423--40814571	78	1.9	78	82	5	185	10	20	36	32	1.87
40814468--40814626	24	6.4	24	73	12	106	11	21	36	30	1.89
40814583--40814702	36	3.4	35	79	9	120	9	17	36	36	1.82
40814681--40814726	24	1.9	24	82	8	58	6	19	34	39	1.78
40816028--40816064	2	18.5	2	94	0	65	51	0	48	0	1.00
40817837--40817871	17	1.9	19	88	11	56	48	11	31	8	1.69
40822899--40822970	36	2.0	36	94	0	126	37	19	13	29	1.90
40832479--40832507	2	14.5	2	100	0	58	51	0	0	48	1.00
40844866--40844894	2	14.5	2	100	0	58	0	51	0	48	1.00
40846609--40846642	2	17.0	2	100	0	68	50	0	0	50	1.00
40850289--40850362	31	2.4	31	90	0	121	36	14	14	33	1.88
40856873--40856913	2	20.5	2	94	0	73	51	2	0	46	1.14
40866612--40866644	2	16.5	2	100	0	66	51	0	48	0	1.00
40903250--40903275	5	5.2	5	100	0	52	61	0	19	19	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40923195--40923225	16	1.9	16	93	0	53	64	3	6	25	1.33
40923453--40923496	2	22.5	2	90	4	72	47	2	0	50	1.13
40938611--40938637	6	4.5	6	100	0	54	33	0	51	14	1.43
40939813--40939843	2	15.5	2	93	0	53	48	0	3	48	1.17
40944274--40944306	5	6.6	5	92	0	57	3	57	0	39	1.14
40949308--40949376	2	34.5	2	82	0	84	42	1	7	49	1.39
40949308--40949372	10	6.9	10	83	13	93	41	1	7	49	1.41
40949308--40949376	18	3.8	18	94	0	102	42	1	7	49	1.39
40949308--40949372	28	2.3	28	94	0	112	41	1	7	49	1.41
40951885--40951909	2	12.5	2	100	0	50	48	0	52	0	1.00
40955454--40955519	2	33.0	2	96	0	123	50	1	0	48	1.10
40956943--40956984	13	3.2	13	78	18	50	71	7	4	16	1.26
40957803--40957838	2	18.5	2	94	5	65	47	0	0	52	1.00
40957803--40957836	17	2.0	17	100	0	68	47	0	0	52	1.00
40958025--40958054	2	15.0	2	100	0	60	50	0	0	50	1.00
40964758--40964800	15	2.7	15	82	7	50	0	81	9	9	0.88
40966655--40966679	13	1.9	13	100	0	50	32	8	4	56	1.47
40966990--40967032	22	1.9	23	86	13	63	30	25	9	34	1.87
40997910--40997976	26	2.6	26	81	9	91	50	1	2	44	1.26
40997941--40997999	22	2.9	19	72	18	57	52	1	0	45	1.10
40998096--40998153	19	2.7	23	75	22	72	51	0	1	46	1.11
40997930--40998297	161	2.4	157	83	6	437	51	2	3	42	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40998382--40998450	30	2.3	29	80	9	77	49	1	2	46	1.25
40998385--40998431	15	3.1	15	82	14	60	51	2	2	44	1.25
40998401--40998451	22	2.4	22	80	9	61	50	0	1	47	1.12
40998454--40998487	16	2.1	16	89	10	52	58	0	0	41	0.98
40998455--40998532	25	3.1	25	76	14	72	55	0	1	43	1.08
40998485--40998539	14	4.1	14	79	15	71	52	0	1	45	1.11
40998469--40998537	25	2.8	25	85	10	88	55	0	1	43	1.08
41039600--41039631	2	16.0	2	100	0	64	50	0	0	50	1.00
41039881--41039912	2	16.0	2	100	0	64	50	0	0	50	1.00
41039599--41040156	280	2.0	279	98	1	1082	39	14	10	35	1.80
41049810--41049851	2	21.0	2	100	0	84	50	0	0	50	1.00
41049909--41050068	84	1.9	84	92	2	268	47	9	6	36	1.61
41050813--41050843	3	10.3	3	100	0	62	67	0	0	32	0.91
41059175--41059223	18	2.8	18	81	3	55	55	0	0	44	0.99
41059642--41059687	15	2.9	16	84	12	51	26	0	0	73	0.83
41059640--41059692	20	2.7	19	83	11	63	24	1	0	73	0.93
41059641--41059697	27	2.1	28	83	9	73	26	1	0	71	0.95
41064231--41064263	14	2.3	15	94	5	59	63	0	33	3	1.10
41074105--41074131	14	1.9	14	100	0	54	66	0	29	3	1.09
41074856--41074943	39	2.3	39	82	4	106	14	3	53	28	1.57
41074877--41074943	21	3.3	21	71	12	68	16	4	52	26	1.63
41080065--41080168	54	1.9	54	88	3	156	21	27	14	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41102040--41102106	3	22.3	3	76	0	62	7	1	58	32	1.35
41102042--41102106	12	5.4	12	80	7	78	7	1	56	33	1.37
41105679--41105706	10	2.8	10	100	0	56	21	0	0	78	0.75
41105671--41105705	18	2.0	17	88	5	52	22	0	0	77	0.78
41119092--41119144	2	26.0	2	96	3	97	49	1	0	49	1.12
41122306--41122345	2	19.0	2	85	10	53	50	0	45	5	1.23
41122300--41122345	22	2.1	22	91	0	74	47	0	41	10	1.38
41137811--41137835	13	1.9	13	100	0	50	44	0	8	48	1.32
41140354--41140381	1	28.0	1	100	0	56	100	0	0	0	0.00
41140859--41140908	12	4.2	12	78	0	55	36	46	0	18	1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106