genome.fa.s2.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  100  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38166390--38166431	21	2.0	21	100	0	84	42	23	14	19	1.87
38168149--38168174	3	8.7	3	100	0	52	69	0	0	30	0.89
38180246--38180278	6	5.5	6	92	0	57	33	3	15	48	1.60
38191407--38191440	14	2.4	14	86	13	52	50	2	2	44	1.32
38194969--38195022	4	13.5	4	92	0	54	38	0	11	50	1.38
38194972--38195039	6	10.7	6	89	6	64	35	0	14	50	1.44
38194976--38195039	18	3.6	18	82	0	74	34	0	15	50	1.45
38194992--38195032	4	10.8	4	79	10	50	26	0	21	51	1.48
38206561--38206596	16	2.3	16	90	4	56	2	69	8	19	1.27
38218372--38218445	35	2.1	35	89	0	112	52	36	2	8	1.45
38219182--38219246	29	2.2	28	84	7	85	63	0	1	35	1.04
38219209--38219254	21	2.3	21	78	17	53	63	0	0	36	0.95
38219182--38219264	29	2.9	28	81	13	80	59	0	1	39	1.05
38219250--38219299	21	2.5	19	81	12	55	46	4	2	48	1.32
38234222--38234330	2	57.0	2	82	12	113	50	0	48	0	1.00
38239651--38239677	14	1.9	14	100	0	54	44	22	25	7	1.79
38245945--38245969	2	12.5	2	100	0	50	48	0	0	52	1.00
38251211--38251238	2	14.0	2	100	0	56	50	0	0	50	1.00
38251888--38251928	15	2.7	15	88	0	64	36	0	24	39	1.56
38253029--38253064	19	1.9	19	88	5	56	19	2	5	72	1.17
38253026--38253080	25	2.2	26	83	9	69	20	1	7	70	1.20
38255014--38255053	21	1.9	21	90	10	64	67	5	0	27	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38255507--38255572	25	2.7	25	83	2	89	57	3	37	1	1.23
38265760--38265805	2	24.5	2	85	12	62	0	50	0	47	1.01
38267002--38267026	3	8.3	3	100	0	50	32	0	0	68	0.90
38267458--38267496	14	2.8	14	88	0	51	53	0	0	46	1.00
38280008--38280071	2	34.0	2	84	12	91	46	0	1	51	1.10
38280008--38280071	23	2.8	23	86	9	94	46	0	1	51	1.10
38280008--38280074	21	3.1	22	89	8	102	46	0	1	52	1.09
38282529--38282652	51	2.4	51	83	0	149	35	4	16	42	1.70
38282769--38282922	22	7.0	22	73	4	85	26	4	20	48	1.68
38283037--38283089	22	2.4	22	80	0	61	50	3	7	37	1.49
38288902--38288975	35	2.1	35	87	2	105	60	12	0	27	1.32
38300390--38300414	6	4.2	6	100	0	50	48	52	0	0	1.00
38303570--38303628	27	2.2	27	100	0	118	28	25	20	25	1.99
38311071--38311110	19	2.1	19	85	4	53	65	0	2	32	1.06
38311104--38311135	9	3.6	9	100	0	64	87	0	0	12	0.54
38311303--38311489	69	2.7	69	85	3	227	35	10	6	47	1.64
38321140--38321186	17	2.8	17	80	6	60	23	4	0	72	1.02
38322411--38322436	3	8.7	3	100	0	52	65	0	0	34	0.93
38322876--38322923	21	2.3	22	85	7	64	50	0	2	47	1.12
38323873--38323930	26	2.3	26	84	3	82	65	0	1	32	1.03
38323882--38323935	26	2.0	27	92	3	92	64	0	1	33	1.04
38329490--38329567	29	2.7	30	82	7	90	39	0	1	58	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38329507--38329556	25	2.1	22	85	10	64	38	0	0	62	0.96
38329566--38329594	14	2.0	15	93	6	51	51	0	0	48	1.00
38329833--38329892	31	1.9	31	86	6	86	53	5	8	33	1.53
38335524--38335592	2	34.0	2	92	2	111	49	2	0	46	1.17
38338312--38338360	25	2.0	25	88	8	73	46	10	4	38	1.57
38358578--38358607	2	15.0	2	100	0	60	50	0	0	50	1.00
38358644--38358688	2	22.5	2	100	0	90	48	0	0	51	1.00
38359145--38359185	21	2.0	21	85	4	57	31	0	7	60	1.24
38360692--38360719	13	2.2	13	100	0	56	46	0	7	46	1.30
38363110--38363173	10	6.6	10	73	10	53	65	0	0	34	0.93
38363114--38363173	18	3.2	18	69	21	52	65	0	0	35	0.93
38363099--38363173	36	2.0	38	89	5	118	65	0	0	34	0.93
38365384--38365428	23	2.0	23	100	0	90	51	8	17	22	1.73
38365598--38365649	16	3.2	16	78	8	52	48	5	0	46	1.26
38366137--38366167	16	1.9	16	100	0	62	70	0	0	29	0.87
38369541--38369665	30	4.2	30	80	6	130	56	6	4	32	1.43
38375085--38375111	2	13.5	2	100	0	54	51	0	48	0	1.00
38381247--38381282	2	18.0	2	100	0	72	50	0	0	50	1.00
38381282--38381313	2	16.0	2	100	0	64	50	0	50	0	1.00
38383823--38383896	35	2.1	34	82	7	87	59	17	0	22	1.37
38385562--38385602	17	2.4	17	83	0	55	60	2	2	34	1.23
38387072--38387155	42	2.0	42	85	0	114	28	15	29	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38390334--38390371	19	2.0	19	94	0	67	42	28	0	28	1.56
38391921--38391953	17	2.0	16	94	5	57	84	0	12	3	0.72
38396132--38396170	2	21.5	2	80	19	50	48	0	0	51	1.00
38396131--38396172	15	2.6	16	81	11	59	47	0	0	52	1.00
38397436--38397478	2	22.5	2	82	17	56	51	0	2	46	1.13
38397439--38397478	9	4.7	9	84	9	57	52	0	2	45	1.14
38417825--38417857	16	2.0	17	88	5	50	36	15	0	48	1.45
38425295--38425362	21	3.2	21	85	2	91	38	19	19	23	1.93
38426491--38426532	21	2.0	21	100	0	84	19	4	23	52	1.65
38426493--38426538	21	2.2	21	92	3	76	17	2	28	52	1.56
38427551--38427576	3	8.7	3	100	0	52	34	0	30	34	1.58
38429709--38429756	19	2.5	20	77	19	57	47	2	4	45	1.33
38429747--38429809	26	2.5	26	80	19	80	38	6	0	55	1.25
38429912--38429949	20	1.9	19	89	5	58	42	18	0	39	1.50
38430615--38431036	86	5.0	86	86	2	577	44	6	7	41	1.58
38430685--38430979	42	6.8	44	68	18	172	43	7	7	41	1.62
38430615--38431013	40	9.5	40	70	17	229	44	6	7	42	1.56
38432056--38432130	31	2.6	28	77	10	89	38	2	0	58	1.12
38439144--38439174	7	4.4	7	100	0	62	41	0	32	25	1.56
38440589--38440619	2	15.5	2	100	0	62	48	0	0	51	1.00
38441327--38441375	25	2.0	25	84	8	64	48	2	0	48	1.12
38441505--38441563	21	2.8	21	79	7	57	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38450007--38450061	29	1.9	28	88	3	83	65	0	0	34	0.93
38450593--38450653	18	3.2	18	81	9	50	50	1	0	47	1.10
38455717--38455759	2	21.5	2	100	0	86	51	0	0	48	1.00
38456027--38456069	2	22.0	2	90	4	70	51	0	2	46	1.13
38461232--38461282	22	2.3	22	86	0	75	41	5	0	52	1.25
38461247--38461309	30	2.1	30	88	5	92	39	3	0	57	1.15
38463437--38463469	2	16.5	2	100	0	66	0	48	0	51	1.00
38465575--38465653	30	2.8	28	81	13	90	62	0	1	36	1.04
38465571--38465653	28	2.8	30	77	15	93	62	0	1	36	1.03
38466984--38467020	2	19.5	2	89	10	60	51	0	0	48	1.00
38466983--38467029	11	4.5	11	87	10	64	53	0	0	46	1.00
38466984--38467020	19	1.9	19	94	0	65	51	0	0	48	1.00
38469999--38470164	33	4.8	33	69	15	111	33	9	9	46	1.69
38469970--38470182	106	2.0	106	90	0	336	35	11	9	44	1.73
38471498--38471545	15	2.9	15	75	21	51	52	0	0	47	1.00
38471494--38471643	27	5.7	27	69	19	95	47	0	0	51	1.10
38471537--38471613	19	3.9	19	73	9	57	41	1	0	57	1.07
38471555--38471597	15	2.9	15	82	3	52	41	2	0	55	1.12
38471542--38471636	22	4.5	22	73	19	71	43	1	1	54	1.14
38471622--38471738	23	4.8	24	69	16	80	49	2	1	46	1.25
38471651--38471740	15	6.0	15	70	14	62	45	2	2	50	1.26
38471752--38471794	10	4.2	10	79	5	50	9	13	0	76	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38485393--38485447	2	27.5	2	88	0	83	49	0	49	1	1.11
38487179--38487207	15	1.9	15	100	0	58	79	0	20	0	0.74
38494165--38494244	29	2.6	30	80	13	92	55	0	0	45	0.99
38496445--38496478	16	2.1	16	100	0	68	11	23	29	35	1.90
38522509--38522571	27	2.3	27	83	5	74	33	1	4	60	1.27
38526292--38526358	34	2.0	34	90	0	107	44	1	2	50	1.26
38536586--38536809	116	1.9	114	82	4	279	22	10	28	38	1.87
38552799--38552843	19	2.4	18	85	14	56	31	2	2	64	1.18
38555140--38555536	218	1.8	216	87	2	598	42	7	4	46	1.51
38555662--38555718	26	2.2	26	83	3	69	19	3	12	64	1.40

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106