genome.fa.s2.2.7.7.80.10.50.1000.84.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  84  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31884696--31884829	56	2.4	56	83	0	160	41	26	11	20	1.85
31884604--31884885	148	1.9	148	83	0	366	38	27	10	22	1.88
31884967--31885053	18	5.1	18	71	13	67	1	28	4	65	1.19
31884964--31885040	23	3.2	23	70	25	77	1	29	3	64	1.19
31889307--31889346	19	2.0	20	95	4	73	42	27	0	30	1.56
31895670--31895694	13	1.9	13	100	0	50	48	0	0	52	1.00
31896785--31896824	19	2.0	20	85	4	55	45	22	2	30	1.66
31907358--31907392	18	2.0	18	88	5	54	42	20	8	28	1.81
31908578--31908670	46	2.0	46	100	0	186	23	15	19	41	1.89
31925298--31925383	16	5.4	16	72	13	52	44	8	8	39	1.64
31925317--31925444	2	66.0	2	70	6	84	47	7	3	41	1.49
31925274--31925423	45	3.3	45	84	2	167	44	7	8	40	1.62
31925336--31925438	45	2.3	45	84	3	127	48	8	3	38	1.53
31928728--31928812	2	42.0	2	97	2	161	49	0	0	49	1.01
31940166--31940320	73	2.1	73	91	2	249	39	17	19	23	1.92
31954683--31954839	86	1.8	85	86	1	224	56	13	26	3	1.54
31965043--31965083	21	2.0	21	90	0	64	43	2	9	43	1.50
31965723--31965756	17	2.0	17	100	0	68	0	52	11	35	1.38
31965654--31965823	84	2.0	86	90	3	272	6	45	14	33	1.70
31965740--31966083	70	5.0	70	96	1	604	7	45	16	30	1.75
31979833--31979870	2	19.0	2	100	0	76	0	50	0	50	1.00
31979902--31979941	2	20.5	2	94	5	73	0	50	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31985513--31985546	16	2.1	17	88	5	52	52	2	0	44	1.16
31985655--31985694	21	1.9	21	94	0	71	37	22	10	30	1.87
31986046--31986070	3	8.3	3	100	0	50	68	0	0	32	0.90
31991137--31991266	60	2.2	60	98	0	251	18	13	36	31	1.89
31998169--31998215	23	2.1	22	84	11	60	46	8	2	42	1.46
32012403--32012441	20	2.0	20	90	10	62	25	5	28	41	1.77
32021584--32021609	2	13.0	2	100	0	52	50	0	50	0	1.00
32027040--32027419	199	1.9	194	88	2	571	27	12	22	38	1.90
32034673--32034869	91	2.2	89	84	4	252	48	3	4	43	1.40
32034910--32035010	42	2.4	42	83	5	123	51	2	1	43	1.28
32034765--32035143	156	2.4	156	89	3	557	53	3	3	39	1.33
32035072--32035287	42	5.2	41	69	16	142	52	1	3	42	1.30
32035121--32035154	15	2.3	15	94	0	59	44	2	0	52	1.16
32034765--32035208	156	2.8	154	81	6	475	55	3	2	38	1.31
32035014--32035263	123	2.0	122	87	2	358	54	2	3	39	1.31
32035249--32035309	22	2.6	22	78	17	61	45	1	1	50	1.21
32048019--32048078	20	3.0	20	78	2	77	31	8	40	20	1.82
32050018--32050042	13	1.9	13	100	0	50	48	8	0	44	1.32
32051267--32051304	19	2.0	19	94	0	67	42	28	0	28	1.56
32054612--32054637	13	2.0	13	100	0	52	46	7	0	46	1.31
32060391--32060450	25	2.5	24	84	10	77	13	8	11	66	1.44
32063706--32063900	43	4.5	43	80	1	201	29	15	13	41	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32064544--32064609	5	11.8	5	80	13	51	19	3	0	77	0.90
32064543--32064611	6	12.0	6	78	9	65	20	2	0	76	0.91
32064639--32064936	163	1.8	163	84	4	404	38	12	12	36	1.81
32091566--32091590	13	1.9	13	100	0	50	44	0	8	48	1.32
32104287--32104353	21	3.1	21	75	10	64	26	13	20	38	1.90
32104319--32104361	21	2.0	21	82	8	52	25	18	23	32	1.97
32104371--32104425	23	2.4	23	96	3	103	21	12	30	34	1.91
32104444--32104525	22	3.8	22	86	3	103	42	28	10	18	1.84
32106721--32106753	15	2.1	17	88	11	52	54	12	0	33	1.37
32106686--32107337	325	2.0	333	86	5	923	41	7	6	44	1.58
32139356--32139399	2	22.5	2	95	4	81	50	0	0	50	1.00
32139451--32139490	2	20.0	2	100	0	80	50	0	0	50	1.00
32145812--32145857	20	2.3	20	92	0	74	30	4	19	45	1.70
32145902--32145960	28	2.1	28	81	6	66	30	18	23	27	1.98
32152411--32152464	27	2.0	27	89	7	83	31	22	12	33	1.92
32170438--32170705	42	6.5	42	76	14	231	42	2	1	52	1.26
32170639--32170698	16	4.2	15	70	20	56	38	1	0	60	1.07
32170743--32170812	24	3.1	23	80	8	72	41	0	1	57	1.08
32170473--32170780	163	1.9	163	91	1	501	42	1	2	52	1.26
32176450--32176477	3	9.3	3	100	0	56	67	0	32	0	0.91
32176819--32176920	44	2.3	44	96	0	186	32	25	4	37	1.77
32179122--32179172	17	3.1	16	78	16	50	37	0	5	56	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32181525--32181722	110	1.8	108	84	6	274	52	7	4	35	1.49
32181605--32181920	158	2.0	158	86	3	449	45	7	7	39	1.61
32181945--32182009	28	2.5	25	83	14	78	70	1	21	6	1.17
32184499--32184562	30	2.1	30	94	5	112	28	45	9	17	1.79
32193160--32193197	2	19.0	2	100	0	76	50	0	0	50	1.00
32194047--32194205	33	4.8	33	78	7	153	18	32	18	30	1.95
32203360--32203416	30	1.9	30	85	0	78	36	15	17	29	1.91
32203404--32203458	28	2.0	28	96	0	101	41	18	21	18	1.90
32206877--32206908	15	2.1	16	94	5	57	81	0	15	3	0.82
32209226--32209449	52	4.3	52	98	0	421	20	19	18	41	1.90
32211230--32211443	28	7.7	28	68	11	111	38	19	9	32	1.84
32211681--32211725	23	2.0	23	86	8	65	42	24	4	28	1.74
32213827--32213866	22	2.0	21	85	14	57	52	0	0	47	1.00
32213826--32213879	21	2.5	21	76	11	56	55	0	0	44	0.99
32224418--32224444	9	3.0	9	100	0	54	33	22	22	22	1.97
32239940--32239980	12	3.3	12	90	10	57	0	26	0	73	0.84
32239940--32239981	13	3.3	13	90	9	61	0	26	0	73	0.83
32242739--32242778	20	2.0	21	90	5	64	20	2	7	70	1.24
32243809--32243848	19	2.1	19	100	0	80	25	5	10	60	1.49
32252489--32252540	25	2.1	25	100	0	104	30	19	7	42	1.79
32273579--32273734	64	2.4	64	90	0	231	41	14	16	27	1.87
32275912--32275966	22	2.6	22	88	5	78	12	10	29	47	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32282860--32282946	2	45.0	2	90	6	144	48	0	0	50	1.00
32288278--32288347	35	2.0	35	85	0	95	48	15	11	24	1.78
32291876--32291915	14	2.7	16	77	18	50	62	0	0	37	0.95
32292076--32292113	15	2.5	16	83	12	53	63	0	0	36	0.95
32292301--32292375	38	2.0	37	97	0	132	30	2	9	56	1.45
32295503--32295567	32	2.0	32	100	0	130	50	21	15	12	1.76
32302606--32302655	17	3.0	17	77	11	59	56	12	10	22	1.65
32307986--32308029	23	2.0	22	81	4	52	40	0	6	52	1.28
32308935--32308982	17	2.9	16	81	6	60	60	12	10	16	1.58
32324140--32324184	22	2.0	22	86	0	63	20	17	6	55	1.64
32326056--32326090	15	2.4	15	85	4	54	40	17	5	37	1.73
32330523--32330691	54	3.1	54	78	8	155	34	10	15	39	1.82
32330600--32330755	54	2.9	53	80	4	143	39	14	12	33	1.84
32330644--32330755	54	2.1	54	84	1	145	41	16	10	32	1.82
32337182--32337598	214	1.9	215	88	1	631	41	8	4	46	1.54
32339394--32339490	34	2.8	35	82	4	99	42	13	6	38	1.69
32339406--32339490	35	2.5	34	82	5	91	41	11	5	41	1.66
32342093--32342128	2	18.0	2	100	0	72	50	0	0	50	1.00
32347600--32347791	64	3.0	64	100	0	384	32	20	23	23	1.98
32351788--32351835	24	2.0	24	87	0	69	16	10	45	27	1.80
32362089--32362128	2	20.0	2	100	0	80	0	50	0	50	1.00
32369836--32369933	30	3.3	30	84	2	108	50	8	11	30	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32374424--32374459	2	18.0	2	100	0	72	50	0	0	50	1.00
32374869--32374925	28	2.0	28	83	6	71	52	1	0	45	1.11
32375877--32375962	16	5.4	16	69	17	54	24	1	9	65	1.29
32378726--32378811	45	1.9	45	95	2	156	61	12	5	19	1.51
32381652--32381738	33	2.6	33	79	1	102	65	0	5	28	1.15
32381730--32381779	16	3.3	15	81	16	59	62	0	2	36	1.07
32381704--32381792	28	3.1	27	71	16	72	66	1	2	30	1.11
32390588--32390648	24	2.7	23	82	7	70	57	0	1	40	1.08
32395583--32395611	2	14.5	2	100	0	58	0	48	0	51	1.00
32397637--32397682	19	2.6	18	80	13	51	23	8	0	67	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106