Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  106  of  106  ( 12678 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41140859--41140908
24
2.1
24
88
0
73
36
46
0
18
1.49
41141030--41141077
15
3.2
15
74
11
53
14
58
4
22
1.54
41141188--41141287
49
2.0
49
100
0
200
26
56
8
10
1.60
41142644--41142685
2
21.0
2
100
0
84
0
50
0
50
1.00
41142685--41142717
2
16.5
2
93
0
57
48
3
0
48
1.17
41142168--41143166
526
1.9
525
99
0
1989
32
17
16
34
1.92
41143783--41143807
5
5.0
5
100
0
50
60
20
0
20
1.37
41151857--41151891
16
2.2
16
90
5
54
20
11
5
62
1.48
41152150--41152195
23
2.0
23
83
8
58
19
8
6
65
1.43
41152674--41152713
15
2.5
15
88
8
53
50
2
2
45
1.28
41152680--41152732
17
3.3
17
82
15
60
43
0
5
50
1.25
41158444--41158475
2
16.0
2
100
0
64
50
0
0
50
1.00
41158512--41158543
2
16.0
2
100
0
64
50
0
0
50
1.00
41183018--41183464
236
1.9
236
84
4
598
37
12
18
30
1.88
41206761--41206846
2
43.0
2
87
11
124
48
0
2
47
1.14
41209882--41209951
10
6.6
11
75
16
60
51
18
2
27
1.60
41209882--41209951
21
3.3
20
82
7
77
51
18
2
27
1.60
41209975--41210076
10
9.9
10
70
9
71
50
17
3
28
1.64
41210256--41210339
21
4.2
21
76
19
65
60
13
0
26
1.33
41210265--41210331
21
3.3
20
76
17
68
59
11
0
28
1.33
41210255--41210530
10
27.1
10
67
20
85
51
14
1
32
1.52
41210476--41210536
21
3.0
20
80
4
70
45
16
1
36
1.57
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41210447--41210543
50
1.9
51
85
6
135
49
14
1
35
1.50
41210673--41210847
21
8.4
19
68
21
59
50
16
5
28
1.66
41210787--41210845
20
2.9
19
80
7
64
52
20
3
23
1.61
41211002--41211048
21
2.3
20
82
10
51
57
14
2
25
1.49
41211040--41211101
21
2.9
21
78
7
54
58
8
3
30
1.43
41211377--41211496
10
11.6
10
71
18
59
51
17
3
27
1.61
41211342--41211412
34
2.1
33
81
2
79
59
11
4
25
1.50
41211435--41211494
20
3.0
20
78
11
68
48
25
3
23
1.66
41211603--41211677
21
3.7
20
71
7
62
56
13
0
30
1.38
41211759--41211785
10
2.7
10
100
0
54
70
7
0
22
1.12
41211917--41211982
19
3.4
19
73
10
62
59
6
1
33
1.31
41212037--41212129
22
4.4
21
73
17
77
53
12
4
29
1.58
41212113--41212168
20
2.8
20
75
2
58
55
16
3
25
1.57
41212037--41212201
73
2.2
75
82
4
192
51
15
4
28
1.62
41212394--41212452
21
2.8
21
80
10
66
57
8
3
30
1.45
41212655--41212743
46
2.0
45
81
2
106
50
14
8
25
1.72
41212856--41212906
21
2.4
22
80
6
59
49
19
1
29
1.60
41213127--41213156
11
2.9
10
90
9
51
50
20
0
30
1.49
41213177--41213226
21
2.4
21
79
0
55
48
20
8
24
1.76
41213433--41213478
21
2.1
22
84
4
58
41
15
6
36
1.73
41213423--41213501
32
2.5
32
79
8
81
48
13
5
32
1.65
41213637--41213696
21
2.8
20
82
9
68
50
16
5
28
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41214123--41214182
31
1.9
32
86
3
86
51
15
6
26
1.67
41214171--41214246
21
3.6
21
74
11
66
48
15
6
28
1.70
41214189--41214348
20
8.0
19
71
10
61
51
14
3
30
1.60
41214769--41214846
32
2.5
33
80
14
94
47
15
7
29
1.73
41214821--41214901
21
3.8
21
76
11
76
51
16
7
24
1.69
41215025--41215073
21
2.3
21
85
0
62
57
10
2
30
1.43
41215015--41215090
31
2.4
31
77
2
80
52
11
3
31
1.56
41215036--41215089
21
2.5
22
85
11
76
51
12
3
31
1.57
41215359--41215585
10
21.6
10
65
22
65
51
14
3
29
1.61
41215361--41215449
21
4.1
21
76
12
67
55
12
3
29
1.53
41215476--41215521
22
2.1
22
84
8
58
58
13
2
26
1.46
41215506--41215586
21
3.8
21
74
9
74
48
13
6
32
1.67
41215652--41215706
21
2.7
20
80
8
58
56
10
3
29
1.51
41217212--41217305
11
8.9
10
69
15
55
52
11
5
30
1.60
41217287--41217598
10
30.1
10
66
19
81
49
16
4
29
1.66
41217789--41217880
7
13.0
7
78
11
98
15
0
46
38
1.46
41217789--41217882
15
6.1
15
79
15
102
14
0
46
38
1.45
41217800--41217897
22
4.6
22
81
11
114
15
1
47
35
1.52
41217790--41217897
14
7.6
14
78
10
87
15
0
46
37
1.53
41219174--41219398
7
32.7
7
79
10
169
9
0
50
40
1.36
41219174--41219440
34
7.8
35
75
11
212
9
0
52
38
1.34
41219175--41219496
48
6.8
48
75
14
210
8
0
53
38
1.31
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41219308--41219493
47
3.9
48
73
14
152
5
0
55
38
1.24
41219400--41219496
7
13.9
7
77
8
81
4
0
59
36
1.16
41219175--41219496
14
23.4
14
75
12
213
8
0
53
38
1.31
41219190--41219496
27
11.1
28
70
14
138
7
0
53
38
1.29
41220333--41220458
35
3.7
33
73
10
103
26
11
25
37
1.89
41220330--41220517
67
2.8
67
81
3
209
25
12
24
38
1.90
41227526--41227815
6
46.3
6
84
10
245
15
0
37
46
1.46
41227821--41227988
15
11.5
14
89
3
210
2
0
45
52
1.13
41227526--41228029
7
75.7
7
82
11
364
10
0
40
48
1.38
41227978--41228008
10
2.9
11
90
9
55
9
0
29
61
1.28
41228027--41228063
1
37.0
1
100
0
74
0
0
0
100
0.00
41235382--41235415
7
4.9
7
100
0
68
11
0
44
44
1.40

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106

The End!