genome.fa.s2.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  51  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19247549--19247578	2	15.0	2	100	0	60	50	0	50	0	1.00
19247074--19248095	511	2.0	511	99	0	2028	30	15	20	33	1.94
19248060--19248089	2	15.0	2	100	0	60	50	0	50	0	1.00
19259230--19259325	48	2.0	48	100	0	192	31	16	18	33	1.94
19266070--19266130	24	2.7	22	85	10	61	29	14	26	29	1.95
19266301--19266367	27	2.5	27	85	0	89	29	14	31	23	1.95
19266367--19266444	23	3.4	22	74	8	66	32	12	21	33	1.91
19269086--19269115	13	2.3	13	94	0	51	13	10	16	60	1.59
19269401--19269693	67	4.3	67	80	2	293	22	18	19	39	1.92
19269381--19269650	134	2.0	134	84	1	353	23	18	18	39	1.92
19269560--19269867	170	1.8	167	80	4	375	23	17	17	40	1.91
19269676--19270250	71	8.2	71	79	4	547	23	18	15	42	1.89
19270777--19270810	2	17.0	2	100	0	68	50	0	0	50	1.00
19270841--19270876	2	18.0	2	100	0	72	50	0	0	50	1.00
19270746--19270877	65	2.0	64	95	2	246	42	10	6	39	1.66
19271939--19272042	41	2.6	40	83	5	122	22	39	17	21	1.92
19272103--19272193	40	2.3	40	100	0	182	38	30	8	21	1.84
19272103--19272169	23	3.2	23	65	30	67	37	29	8	23	1.86
19287014--19287068	23	2.4	23	75	3	58	30	21	14	32	1.93
19287454--19287654	23	8.8	22	75	6	143	24	29	16	29	1.97
19287480--19287604	46	2.7	46	86	2	180	23	31	20	25	1.98
19287536--19287691	68	2.3	68	82	7	181	25	28	14	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19287567--19287687	23	5.3	23	79	9	140	25	28	12	33	1.92
19289253--19289480	71	3.2	71	84	3	278	33	10	20	35	1.87
19297368--19297405	19	2.1	18	90	5	58	26	21	13	39	1.89
19317409--19317433	13	1.9	13	100	0	50	48	8	0	44	1.32
19318280--19318320	21	1.9	22	85	5	57	19	24	4	51	1.66
19319459--19319483	11	2.3	11	100	0	50	24	0	16	60	1.36
19335566--19335611	21	2.2	20	84	7	56	15	21	8	54	1.68
19335571--19335611	21	1.9	22	90	5	66	17	24	9	48	1.76
19338154--19338231	37	2.1	37	92	4	131	26	8	38	25	1.86
19341870--19341940	35	2.0	35	86	5	99	30	26	12	29	1.93
19342456--19342610	73	2.1	73	84	2	195	22	17	20	40	1.92
19343006--19343048	22	2.0	21	86	8	61	30	16	0	53	1.43
19346900--19347010	37	3.0	37	82	0	123	26	36	11	26	1.90
19350250--19350368	41	2.9	42	88	1	168	24	35	20	20	1.96
19352652--19353059	205	2.0	203	97	0	753	29	26	17	25	1.98
19356675--19356716	22	1.9	22	85	0	57	23	28	21	26	1.99
19356930--19357040	37	3.0	37	82	0	123	26	36	11	26	1.90
19358605--19358660	22	2.5	23	82	5	69	21	7	3	67	1.30
19359318--19359383	26	2.7	23	80	13	71	65	1	25	7	1.28
19362511--19362745	126	1.8	123	82	8	274	54	4	8	32	1.51
19375341--19375420	40	2.0	41	87	7	119	36	25	21	17	1.95
19379156--19379291	43	3.2	42	85	3	164	25	16	33	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19379156--19379291	42	3.2	42	86	3	164	25	16	33	23	1.96
19380981--19381117	35	4.0	35	73	13	115	31	25	14	28	1.95
19381012--19381187	67	2.6	66	90	1	271	34	25	14	26	1.94
19381041--19381144	32	3.2	32	75	17	122	35	27	14	22	1.93
19381056--19381167	35	3.3	35	73	12	106	32	25	14	28	1.94
19381575--19381756	73	2.5	73	84	5	226	21	20	17	40	1.91
19384738--19384783	20	2.3	20	85	3	67	41	0	13	45	1.43
19387019--19387078	27	2.3	26	79	2	66	66	3	28	1	1.17
19393003--19393042	19	2.0	20	85	4	55	32	17	2	47	1.61
19395520--19395570	2	25.5	2	95	0	93	50	0	47	1	1.12
19396175--19396327	42	3.6	42	81	0	180	20	18	35	24	1.96
19396181--19396341	84	1.9	83	82	7	200	21	17	35	25	1.95
19401991--19402137	68	2.2	65	93	3	249	23	22	22	31	1.98
19401991--19402158	68	2.5	68	89	6	229	23	21	23	32	1.98
19404920--19405038	63	1.9	63	87	0	175	30	14	31	24	1.94
19410205--19410323	63	1.9	63	87	0	175	30	14	31	24	1.94
19416946--19417018	36	2.0	36	91	0	119	31	5	13	49	1.65
19433210--19433444	28	7.9	28	78	11	229	41	10	13	34	1.79
19433234--19433306	36	2.0	36	91	0	119	45	12	12	30	1.78
19433270--19433444	29	6.1	29	78	7	187	42	9	13	34	1.77
19433287--19433444	57	2.7	57	80	6	183	43	9	13	33	1.77
19436931--19437008	37	2.1	37	92	4	131	24	37	10	28	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19438444--19438560	39	3.1	39	69	16	120	25	13	32	28	1.94
19438383--19438600	73	3.0	73	96	0	400	22	14	34	28	1.93
19443301--19443674	55	6.8	55	90	3	558	28	35	13	22	1.92
19443459--19443544	27	3.1	27	64	20	70	25	40	13	19	1.89
19445228--19445316	39	2.3	39	96	0	160	33	23	20	22	1.97
19445618--19445667	2	25.0	2	95	0	91	48	0	2	50	1.12
19449921--19449969	21	2.3	21	96	0	89	24	24	26	24	2.00
19450354--19450455	36	2.7	38	72	11	95	23	39	15	21	1.92
19451083--19451130	20	2.5	20	83	16	73	43	8	33	14	1.75
19452303--19452341	2	19.5	2	89	0	60	46	48	5	0	1.24
19454337--19454458	43	2.8	43	76	2	120	24	18	37	19	1.94
19454450--19454493	22	2.0	23	95	4	81	22	0	45	31	1.53
19463250--19463340	36	2.5	36	85	3	119	36	23	12	28	1.90
19468023--19468080	26	2.3	25	78	3	62	1	29	3	65	1.19
19474844--19475017	28	6.0	28	83	8	195	40	9	13	37	1.76
19474844--19475006	59	2.8	58	87	4	222	38	9	12	39	1.76
19475159--19475191	17	1.9	17	88	11	50	39	3	15	42	1.62
19476508--19476593	30	3.1	30	59	25	71	30	29	16	24	1.96
19476506--19476662	52	3.0	52	94	0	269	31	30	14	22	1.94
19486700--19486913	107	2.0	107	98	0	403	27	26	15	29	1.96
19489851--19489875	2	12.5	2	100	0	50	52	0	0	48	1.00
19490033--19490178	54	2.7	54	85	0	193	21	10	43	23	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19493118--19493144	2	13.5	2	100	0	54	48	0	0	51	1.00
19493209--19493235	2	13.5	2	100	0	54	48	0	0	51	1.00
19493095--19493281	91	2.1	91	94	4	333	28	8	17	44	1.77
19493353--19493458	38	2.7	39	81	5	108	25	17	34	21	1.96
19496479--19496619	35	4.0	35	88	1	194	29	10	33	26	1.90
19509116--19509194	36	2.2	36	84	4	97	12	10	49	27	1.73
19516256--19516344	36	2.5	36	83	8	103	30	38	14	16	1.89
19516906--19517042	43	3.2	43	90	2	204	29	18	31	21	1.97
19522663--19522781	43	2.8	43	89	2	177	21	21	37	19	1.94
19522673--19522794	43	2.8	43	88	2	174	22	18	39	18	1.92
19522780--19522842	20	3.2	20	90	2	101	25	3	41	30	1.71
19531896--19532104	42	5.0	42	90	0	328	22	32	22	22	1.98
19540248--19540393	37	3.9	37	92	1	231	26	35	9	28	1.88
19541068--19541107	20	2.0	20	85	0	53	42	10	32	15	1.79
19548064--19548114	20	2.6	19	81	6	57	49	3	29	17	1.65
19550050--19550220	29	5.9	28	76	7	144	38	11	9	40	1.73
19552082--19552138	20	2.8	20	94	0	96	31	22	12	33	1.91
19554940--19555038	38	2.6	38	82	6	101	24	39	16	20	1.92
19555758--19555803	20	2.3	20	92	0	74	43	8	39	8	1.66
19556990--19557049	30	2.1	29	81	6	68	30	8	23	38	1.84
19569367--19569409	20	2.2	20	82	0	50	46	13	20	18	1.83
19572704--19572743	19	2.1	19	95	0	71	50	2	0	47	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19574119--19574273	54	2.9	54	89	0	238	21	11	39	27	1.88
19578229--19578347	37	3.2	37	85	4	159	24	36	10	28	1.88
19585049--19585170	40	3.1	40	75	9	117	24	14	36	24	1.93
19585064--19585170	38	2.7	40	86	4	146	22	15	38	23	1.93
19591831--19592044	54	4.0	54	84	4	270	21	12	40	25	1.89
19591838--19592044	108	1.9	108	87	2	299	22	12	40	24	1.88
19601100--19601132	16	2.1	16	100	0	66	24	30	12	33	1.91
19637121--19637197	13	5.5	15	72	24	71	64	0	35	0	0.93
19637131--19637197	4	17.2	4	71	17	52	67	0	32	0	0.91
19637123--19637197	20	3.7	20	92	3	114	66	0	33	0	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106