genome.fa.s2.2.7.7.80.10.50.1000.104.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  104  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39900166--39900240	25	3.0	25	79	11	80	54	0	4	41	1.19
39903630--39903664	12	2.9	12	91	0	61	25	51	22	0	1.48
39903630--39903664	18	1.9	18	88	0	52	25	51	22	0	1.48
39914039--39914089	14	3.8	14	80	17	63	33	0	5	60	1.21
39931351--39931449	47	2.1	47	96	1	182	37	14	10	38	1.79
39937174--39937231	24	2.3	26	82	11	68	56	6	6	29	1.51
39937421--39937456	2	18.0	2	100	0	72	50	0	0	50	1.00
39938626--39938674	24	2.0	24	96	0	89	48	20	10	20	1.78
39944771--39944880	54	2.0	54	100	0	220	35	20	19	25	1.95
39968754--39968798	2	22.5	2	100	0	90	48	0	0	51	1.00
39971818--39971894	39	2.0	39	94	0	136	51	9	9	29	1.64
39972195--39972321	52	2.4	52	81	9	141	37	4	36	22	1.75
39976184--39976213	14	2.1	14	100	0	60	13	60	6	20	1.55
39982979--39983005	2	13.5	2	100	0	54	51	0	48	0	1.00
39987579--39987627	22	2.1	22	81	11	53	65	18	2	14	1.37
39988002--39988035	2	17.0	2	93	0	59	50	2	0	47	1.16
39996334--39996379	23	2.0	23	91	0	74	39	13	10	36	1.79
39999838--39999883	23	2.0	23	91	0	74	39	13	10	36	1.79
40000703--40000742	18	2.2	18	95	0	71	22	10	15	52	1.71
40000918--40000949	16	2.0	16	93	0	55	28	0	0	71	0.86
40001009--40001038	9	3.3	9	90	0	51	26	10	20	43	1.83
40001039--40001120	39	2.0	41	83	6	105	26	14	19	39	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40001331--40001387	27	2.1	27	96	0	105	42	19	17	21	1.90
40004311--40004342	16	2.0	16	93	0	55	28	12	15	43	1.83
40005780--40005819	3	13.3	3	94	0	71	65	0	2	32	1.06
40021619--40021644	6	4.3	6	100	0	52	0	0	53	46	1.00
40021701--40021738	18	2.1	18	100	0	76	31	34	15	18	1.92
40027347--40027374	7	4.0	7	100	0	56	28	14	28	28	1.95
40040113--40040195	38	2.2	38	95	2	148	48	14	4	32	1.65
40046346--40046380	17	2.1	17	88	0	52	42	0	25	31	1.55
40049952--40050123	35	4.9	35	84	2	211	27	9	36	27	1.87
40077342--40077384	21	2.0	22	82	13	54	48	0	0	51	1.00
40077592--40077633	17	2.5	17	80	7	50	57	0	0	42	0.99
40092176--40092203	2	14.0	2	100	0	56	50	0	50	0	1.00
40097793--40098105	168	1.9	169	87	5	472	33	23	16	25	1.96
40104233--40104267	6	5.8	6	87	12	54	82	2	14	0	0.77
40106319--40106348	2	15.0	2	100	0	60	50	0	50	0	1.00
40106854--40106888	18	1.9	18	88	0	52	22	2	2	71	1.13
40110745--40110878	67	2.0	68	94	4	236	36	14	26	23	1.92
40111472--40111612	48	2.9	49	85	6	196	14	31	4	49	1.64
40111617--40111663	18	2.6	18	74	12	51	17	76	2	4	1.04
40118588--40118628	2	20.5	2	89	0	64	43	0	4	51	1.23
40122599--40122630	6	5.2	6	96	3	55	31	50	18	0	1.48
40126682--40126722	2	20.5	2	100	0	82	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40134431--40134471	21	2.0	21	90	4	66	58	0	0	41	0.98
40142909--40142939	13	2.4	13	94	0	53	90	0	9	0	0.46
40157222--40157272	20	2.5	20	93	0	84	41	27	5	25	1.78
40158082--40158121	18	2.3	18	86	4	55	75	0	10	15	1.05
40166684--40166749	32	2.1	32	100	0	132	28	6	21	43	1.76
40167516--40167611	9	9.8	10	68	20	53	75	2	22	0	0.91
40167511--40167605	28	3.5	28	90	5	133	73	2	24	0	0.94
40167502--40167609	28	3.7	29	86	7	114	74	1	24	0	0.92
40167535--40167619	27	3.1	27	83	8	102	75	1	22	1	0.94
40168174--40168206	2	16.5	2	100	0	66	48	0	0	51	1.00
40168333--40168365	2	16.5	2	100	0	66	48	0	0	51	1.00
40168073--40168383	159	2.0	157	98	1	595	30	10	14	44	1.79
40170750--40170792	19	2.2	20	80	12	54	34	4	0	60	1.17
40170757--40170795	19	2.1	19	90	4	62	28	5	0	66	1.12
40192052--40192201	50	3.0	50	91	0	228	32	28	17	21	1.96
40195415--40195459	17	2.6	16	82	10	54	68	11	2	17	1.29
40201280--40201320	9	4.8	9	79	8	50	58	2	0	39	1.11
40201800--40201865	29	2.2	28	79	12	69	53	0	1	45	1.09
40203394--40203426	3	11.0	3	93	0	57	33	3	63	0	1.10
40203386--40203422	15	2.5	15	95	4	67	32	5	62	0	1.18
40205855--40206015	4	41.8	4	82	11	176	49	19	0	30	1.48
40205855--40206021	22	7.8	22	82	12	186	49	18	0	31	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40205867--40206060	4	48.5	4	87	4	113	49	14	0	35	1.44
40205869--40206057	30	6.0	31	73	14	136	49	14	0	34	1.44
40206014--40206058	15	3.0	15	96	0	81	48	0	0	51	1.00
40205945--40206060	21	5.5	21	82	9	92	49	9	0	40	1.35
40218276--40218363	43	2.0	43	86	0	122	44	19	17	19	1.87
40234244--40234279	11	3.0	13	84	15	51	77	0	22	0	0.76
40244935--40245014	29	2.8	27	72	12	70	55	3	0	41	1.18
40262355--40262388	16	2.1	16	94	0	59	35	0	0	64	0.94
40262406--40262431	13	2.0	13	100	0	52	30	0	0	69	0.89
40269456--40269487	17	1.9	17	93	6	57	43	18	0	37	1.51
40280890--40280933	20	2.2	20	84	12	54	61	0	18	20	1.35
40281493--40281542	26	1.9	26	100	0	100	28	12	16	44	1.83
40283375--40283449	2	37.5	2	89	0	114	46	1	2	48	1.24
40286835--40287126	35	8.3	35	82	3	293	43	13	7	36	1.71
40286826--40287088	142	1.9	140	85	1	364	42	12	7	37	1.71
40288431--40288470	20	2.1	20	86	9	57	30	10	0	60	1.30
40292701--40292800	29	3.4	29	78	8	87	37	11	6	46	1.64
40297151--40297179	6	4.8	6	100	0	58	48	0	51	0	1.00
40309542--40309579	3	12.7	3	94	0	67	34	0	65	0	0.93
40313442--40313469	2	14.0	2	100	0	56	50	0	50	0	1.00
40315978--40316013	2	18.0	2	100	0	72	50	0	0	50	1.00
40317354--40317443	2	46.0	2	86	8	123	46	1	0	51	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40319081--40319128	24	2.0	24	83	0	60	39	14	8	37	1.76
40322208--40322233	2	13.0	2	100	0	52	50	0	50	0	1.00
40328189--40328288	29	3.5	29	79	2	94	29	10	7	54	1.60
40328207--40328288	28	2.9	29	79	3	85	29	10	8	51	1.67
40331569--40331601	10	3.3	10	95	0	57	57	0	42	0	0.98
40331573--40331602	2	15.0	2	92	0	51	53	0	46	0	1.00
40333639--40333702	21	3.0	22	79	4	67	21	7	23	46	1.77
40345548--40345868	162	2.0	162	86	2	448	38	14	9	36	1.80
40350114--40350141	2	14.0	2	100	0	56	50	0	0	50	1.00
40357326--40357359	15	2.2	16	89	5	52	79	0	20	0	0.73
40361026--40361055	4	7.5	4	100	0	60	26	0	23	50	1.50
40364469--40364538	35	2.0	35	97	0	131	30	14	24	31	1.94
40370027--40370068	2	21.0	2	95	0	75	47	0	2	50	1.14
40389491--40389532	21	2.0	21	81	9	50	66	0	0	33	0.92
40390500--40390551	27	1.9	27	88	0	77	40	1	1	55	1.22
40397277--40397319	22	2.0	22	86	4	61	0	16	4	79	0.90
40401751--40401777	2	13.5	2	100	0	54	51	0	48	0	1.00
40410872--40410940	30	2.3	30	85	7	86	36	20	1	42	1.61
40411669--40411744	38	2.0	38	97	0	143	31	9	15	43	1.79
40418463--40418548	43	2.0	42	86	6	120	39	26	10	23	1.87
40422309--40422354	21	2.2	21	100	0	92	17	8	0	73	1.07
40427829--40427875	24	2.0	24	83	8	60	29	0	4	65	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40441493--40442283	396	2.0	395	99	0	1564	43	10	9	36	1.71
40448205--40448237	15	2.1	16	94	5	59	87	6	6	0	0.65
40451523--40451632	55	2.0	55	90	0	175	33	13	20	31	1.92
40463922--40464002	2	43.5	2	71	22	52	48	1	4	44	1.32
40464323--40464353	3	10.3	3	92	0	53	29	0	0	70	0.87
40465760--40465796	15	2.4	16	86	13	60	37	5	0	56	1.22
40467820--40467887	29	2.4	28	80	11	75	51	2	0	45	1.16
40467853--40467904	21	2.5	22	81	9	63	50	1	0	48	1.12
40470470--40470522	23	2.3	23	83	6	63	54	0	41	3	1.18
40482839--40482869	4	7.5	4	92	7	53	74	3	0	22	0.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106