genome.fa.s2.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  95  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36119015--36119083	31	2.2	32	84	2	86	24	28	26	20	1.99
36132570--36132610	16	2.7	15	88	7	57	70	0	29	0	0.87
36135641--36135675	9	4.1	8	89	10	52	34	2	0	62	1.10
36135634--36135683	17	3.1	16	78	21	59	32	4	0	64	1.12
36135634--36135684	20	2.6	19	82	14	59	31	3	0	64	1.11
36141521--36141626	38	2.7	40	85	2	144	22	40	16	20	1.91
36144137--36144202	28	2.3	29	85	10	84	33	15	25	25	1.95
36144308--36144429	64	1.9	64	91	3	201	33	11	14	40	1.82
36160667--36160703	15	2.5	15	86	0	56	24	2	18	54	1.57
36162894--36162927	17	2.1	16	89	10	52	32	2	11	52	1.53
36164153--36164177	2	12.5	2	100	0	50	48	0	0	52	1.00
36172190--36172231	12	3.5	12	83	0	57	26	4	0	69	1.08
36172728--36172795	33	2.1	33	86	2	93	17	41	13	27	1.87
36173443--36173518	8	8.6	9	78	9	77	15	1	0	82	0.73
36173443--36173515	5	14.8	5	83	8	69	16	1	0	82	0.75
36173443--36173516	30	2.5	29	82	8	87	16	1	0	82	0.74
36178117--36178259	35	4.1	34	78	6	117	23	7	41	26	1.81
36178482--36178520	2	20.0	2	94	5	71	48	0	0	51	1.00
36179177--36179472	60	4.9	60	86	4	359	25	14	32	27	1.95
36179177--36179430	122	2.1	120	87	4	359	25	13	33	26	1.94
36180582--36180631	20	2.5	19	81	18	57	66	6	0	28	1.15
36181626--36181672	20	2.3	20	71	7	51	78	0	4	17	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36188125--36188164	12	3.4	12	86	3	55	82	12	0	5	0.82
36190043--36190102	30	2.1	30	84	6	79	31	6	21	40	1.79
36192690--36192715	12	2.2	12	100	0	52	76	7	0	15	0.99
36194219--36194299	21	3.9	21	82	4	94	28	30	13	27	1.94
36194213--36194544	143	2.3	143	86	3	436	29	22	13	34	1.92
36194363--36194433	21	3.4	21	78	14	67	32	26	15	25	1.95
36194502--36194557	23	2.5	22	85	11	69	32	26	10	30	1.90
36194713--36194765	17	2.9	17	81	13	54	77	1	1	18	0.96
36204059--36204092	16	2.2	15	89	5	50	61	0	0	38	0.96
36204416--36204455	13	3.0	14	82	10	57	57	0	0	42	0.98
36208196--36208381	55	3.4	53	75	7	158	13	11	32	41	1.81
36208402--36208450	23	2.1	23	96	0	89	26	22	30	20	1.98
36211981--36212306	31	10.5	31	75	3	298	40	19	17	21	1.91
36212661--36213156	156	3.2	156	86	1	656	27	19	18	34	1.96
36214788--36215152	31	11.5	30	79	8	243	39	19	16	23	1.92
36214788--36215152	62	5.8	62	80	7	349	39	19	16	23	1.92
36214787--36215143	93	3.8	93	77	9	312	39	19	16	24	1.91
36214950--36215140	101	1.9	100	81	7	235	42	19	15	22	1.88
36215719--36215974	47	5.5	45	76	6	217	25	34	14	25	1.94
36215719--36215972	94	2.7	94	81	3	271	24	34	14	25	1.94
36215749--36216026	140	2.0	141	81	2	326	25	34	14	25	1.93
36227049--36227091	14	3.1	14	83	6	52	30	2	0	67	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36231103--36231178	38	2.1	36	87	5	107	34	11	15	38	1.84
36233798--36233880	21	3.8	21	73	6	58	25	9	22	42	1.84
36233798--36233866	22	3.2	21	75	4	66	24	10	23	42	1.85
36233887--36233996	23	4.7	23	82	6	123	37	28	10	23	1.89
36233887--36234089	46	4.3	48	74	15	136	37	27	12	23	1.90
36233934--36234183	26	10.4	26	74	13	182	36	26	12	23	1.91
36233957--36234204	95	2.6	95	92	0	406	37	27	12	22	1.91
36234026--36234157	69	1.9	67	88	6	183	35	27	14	22	1.93
36234052--36234205	69	2.2	66	77	13	148	37	27	12	22	1.91
36234173--36234221	21	2.3	21	96	0	89	36	30	16	16	1.91
36234173--36234232	21	2.8	20	90	5	75	38	28	13	20	1.90
36244511--36244543	13	2.4	14	90	5	50	60	6	0	33	1.21
36247538--36247579	4	11.2	4	82	14	54	0	16	0	83	0.65
36247543--36247579	11	3.3	11	92	3	56	0	16	0	83	0.64
36247538--36247588	26	1.9	27	88	4	77	0	15	1	82	0.76
36247538--36247579	7	5.6	8	88	8	54	0	16	0	83	0.65
36260895--36260938	6	7.3	6	84	0	61	63	4	29	2	1.26
36283177--36283214	7	5.4	7	100	0	76	13	15	42	28	1.85
36289030--36289069	22	1.9	20	90	10	62	82	0	12	5	0.82
36289308--36289344	2	19.0	2	88	5	58	45	0	2	51	1.15
36291262--36291304	22	1.9	22	85	4	59	48	0	6	44	1.29
36292545--36292586	2	21.0	2	95	0	75	50	2	0	47	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36294797--36294844	20	2.4	20	96	0	87	8	22	12	56	1.63
36308804--36308831	2	14.0	2	100	0	56	50	0	0	50	1.00
36318901--36318981	2	39.5	2	80	9	92	48	4	3	43	1.42
36320211--36320252	2	21.0	2	100	0	84	50	0	50	0	1.00
36320479--36320525	8	5.8	8	76	14	51	4	10	0	85	0.74
36320693--36320731	20	1.9	20	84	5	51	33	0	2	64	1.08
36324431--36324494	22	2.9	22	90	0	92	31	21	20	26	1.98
36324473--36324575	26	3.9	26	72	8	75	33	20	21	25	1.97
36328366--36328404	18	2.2	18	90	0	60	10	5	33	51	1.58
36330813--36330849	2	18.5	2	100	0	74	48	0	0	51	1.00
36337897--36337925	2	14.5	2	100	0	58	51	0	0	48	1.00
36343075--36343112	20	1.9	20	84	10	51	55	0	0	44	0.99
36353140--36353178	15	2.4	16	83	8	53	82	0	17	0	0.68
36353140--36353168	14	2.0	15	93	6	51	82	0	17	0	0.66
36356503--36356544	8	5.2	8	88	0	57	52	7	40	0	1.29
36360096--36360168	27	2.7	25	78	14	74	65	2	24	6	1.30
36360521--36360577	22	2.7	21	75	10	62	35	3	5	56	1.39
36360863--36360921	30	2.1	27	85	14	77	37	13	8	40	1.75
36362981--36363020	11	3.6	11	83	9	55	0	20	0	80	0.72
36375892--36375931	17	2.4	17	86	0	53	32	22	10	35	1.87
36376387--36376579	53	3.7	52	80	0	206	29	24	12	33	1.92
36376406--36376599	106	1.8	105	80	3	228	32	21	11	34	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36381460--36381816	59	6.0	59	81	5	353	36	17	14	32	1.90
36381456--36381814	118	3.0	117	82	5	418	36	17	14	32	1.89
36392270--36392307	13	2.8	13	82	17	51	47	7	15	28	1.74
36393693--36393730	3	12.7	3	91	0	58	26	0	2	71	1.00
36394320--36394344	13	1.9	13	100	0	50	12	40	0	48	1.40
36398746--36398789	2	22.0	2	95	0	79	52	0	0	47	1.00
36401817--36401862	2	23.0	2	100	0	92	50	0	0	50	1.00
36408094--36408140	23	2.1	23	92	4	78	14	23	14	46	1.82
36412076--36412102	2	13.5	2	100	0	54	48	0	0	51	1.00
36413974--36414023	19	2.6	19	73	17	50	64	8	2	26	1.32
36415912--36416017	54	2.0	54	90	0	167	20	31	14	33	1.92
36416367--36416474	31	3.5	31	93	0	171	23	20	20	36	1.95
36418683--36418900	24	9.1	24	85	0	240	41	20	17	20	1.90
36418988--36419082	29	3.3	29	82	5	104	38	10	11	38	1.76
36429135--36429167	11	2.8	12	90	4	50	30	3	3	63	1.24
36431043--36431083	16	2.6	16	92	0	64	82	4	9	2	0.89
36431043--36431096	16	3.5	15	82	9	56	81	3	11	3	0.95
36431527--36431581	2	28.0	2	88	3	85	49	3	0	47	1.19
36442217--36442254	18	2.1	18	90	0	58	26	2	7	63	1.35
36442250--36442283	15	2.3	15	90	10	52	11	5	2	79	1.02
36448843--36448936	45	2.1	45	83	0	116	44	5	5	44	1.49
36449813--36449860	3	16.3	3	89	4	71	70	2	0	27	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36454876--36454910	3	11.7	3	90	0	52	71	2	0	25	1.00
36454873--36454907	18	1.9	18	100	0	70	74	2	0	22	0.95
36455882--36455913	16	2.0	16	93	0	55	25	15	12	46	1.81
36462205--36462269	21	3.2	21	64	24	57	44	3	6	46	1.44
36462194--36462275	40	2.0	40	100	0	164	42	4	7	45	1.53
36464252--36464388	67	2.0	67	100	0	274	32	15	10	41	1.82
36465238--36465264	2	13.5	2	100	0	54	51	0	0	48	1.00
36467000--36467049	25	2.0	26	96	4	93	58	0	0	42	0.98
36467233--36467294	22	2.7	23	77	5	72	48	0	3	48	1.17
36467000--36467329	108	3.0	108	79	11	316	55	4	1	39	1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106