genome.fa.s2.2.7.7.80.10.50.1000.27.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  27  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10758705--10758766	26	2.5	24	82	12	72	20	12	4	61	1.50
10758988--10759372	92	4.2	92	91	0	592	29	14	23	33	1.93
10762740--10762907	78	2.2	78	90	0	255	19	25	16	38	1.93
10766137--10766395	118	2.2	118	89	1	394	44	26	11	17	1.83
10768470--10768545	17	4.5	17	83	15	79	26	0	0	73	0.83
10768488--10768561	4	18.2	4	81	13	73	25	0	0	74	0.82
10768470--10768561	9	10.1	9	78	19	86	26	0	0	73	0.83
10770032--10770115	22	3.6	22	77	12	96	39	29	14	16	1.88
10770055--10770135	26	3.3	26	70	19	82	38	25	13	22	1.91
10770033--10770320	48	6.0	48	69	11	178	39	25	11	23	1.88
10770122--10770321	103	1.9	103	90	0	319	40	23	10	26	1.87
10782052--10782167	21	5.5	21	68	13	94	41	2	4	51	1.35
10782055--10782167	42	2.7	43	90	1	165	40	2	4	52	1.36
10783209--10783304	47	2.0	47	91	0	156	36	6	10	46	1.63
10783281--10783324	20	2.2	20	91	0	70	40	2	13	43	1.57
10795147--10795219	34	2.1	34	100	0	146	41	30	5	23	1.77
10801816--10801866	2	26.5	2	88	7	79	50	1	0	47	1.12
10802368--10802445	24	3.4	24	71	10	72	37	17	15	29	1.91
10802369--10802496	45	2.8	45	80	4	159	35	18	16	28	1.93
10802463--10802514	24	2.2	24	85	0	68	42	23	15	19	1.89
10802469--10802515	24	2.0	24	91	0	76	40	19	19	21	1.92
10804762--10804790	2	15.0	2	92	7	51	0	51	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10804795--10804823	2	14.5	2	100	0	58	48	0	0	51	1.00
10810494--10810530	2	18.5	2	100	0	74	0	48	0	51	1.00
10815214--10815272	21	2.8	21	75	12	59	74	1	10	13	1.14
10815429--10815474	21	2.2	21	84	7	58	28	2	8	60	1.38
10815706--10815737	16	2.1	16	88	11	50	0	18	0	81	0.70
10815741--10815795	18	3.1	18	76	12	60	67	3	7	21	1.31
10815782--10815826	20	2.2	21	84	11	58	75	6	11	6	1.18
10815765--10815860	48	1.9	48	82	14	115	72	4	9	13	1.23
10815829--10815865	19	1.9	19	94	0	65	72	2	5	18	1.15
10815816--10815854	17	2.4	16	87	8	60	76	0	5	17	0.96
10816241--10816271	7	4.4	7	95	0	53	25	0	16	58	1.38
10817026--10817086	30	2.0	32	84	12	83	68	6	18	6	1.33
10839980--10840153	29	6.1	29	78	6	167	40	6	10	41	1.65
10839993--10840138	56	2.6	57	84	2	177	43	6	9	40	1.62
10839973--10840137	85	1.9	85	82	4	208	41	6	10	41	1.65
10840481--10840745	130	2.1	129	97	1	505	45	6	9	38	1.63
10840889--10840999	28	3.9	28	83	5	141	46	9	8	36	1.65
10842445--10842485	17	2.4	17	88	8	57	43	2	2	51	1.28
10848243--10848293	18	2.8	18	77	11	59	11	58	15	13	1.63
10853166--10853194	13	2.2	13	100	0	58	31	6	24	37	1.82
10853659--10853685	2	13.5	2	100	0	54	51	0	0	48	1.00
10853776--10853824	19	2.5	19	80	6	53	14	48	14	22	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10854162--10854249	35	2.5	33	77	14	88	20	10	40	28	1.85
10855469--10855496	4	7.0	4	100	0	56	75	0	0	25	0.81
10867756--10867858	47	2.2	47	91	0	161	29	25	12	33	1.92
10867884--10868241	38	9.2	38	77	9	294	24	14	18	42	1.88
10867951--10868241	37	7.6	36	76	12	181	25	14	18	41	1.88
10867884--10868241	81	4.6	76	79	11	300	24	14	18	42	1.88
10870158--10870201	22	1.9	24	90	9	74	77	0	0	22	0.77
10871642--10871679	18	2.1	18	85	14	51	76	2	15	5	1.08
10881136--10881178	16	2.4	18	81	11	54	4	25	2	67	1.22
10883454--10883488	2	17.5	2	93	0	61	45	0	2	51	1.16
10892063--10892109	2	23.5	2	100	0	94	0	0	48	51	1.00
10892169--10892224	25	2.2	25	96	0	103	19	32	7	41	1.79
10892548--10892903	174	2.0	174	91	2	572	27	17	16	38	1.91
10906910--10906948	20	2.0	20	90	10	62	56	0	0	43	0.99
10907067--10907095	8	3.8	8	90	9	51	27	0	0	72	0.85
10923393--10923431	2	19.5	2	94	0	69	48	2	0	48	1.15
10924415--10924588	87	2.0	89	80	5	201	27	9	14	47	1.76
10925096--10925216	64	1.9	64	84	3	163	34	10	16	38	1.84
10929116--10929284	71	2.4	71	91	0	275	21	13	40	24	1.89
10930611--10930638	2	14.0	2	100	0	56	50	0	0	50	1.00
10936705--10936754	19	2.6	19	75	12	57	12	36	8	44	1.71
10937612--10937713	38	2.6	39	82	4	125	23	17	37	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10938688--10938734	2	24.0	2	95	4	87	48	0	0	51	1.00
10945617--10945788	15	11.6	14	67	19	57	66	0	2	30	1.08
10945619--10945687	5	13.4	5	76	14	52	71	0	1	27	0.95
10945720--10945787	22	3.2	22	70	8	68	70	0	0	29	0.87
10945660--10945788	56	2.2	60	80	6	140	67	0	2	29	1.08
10945728--10945815	33	2.6	33	83	5	104	68	0	2	29	1.02
10946030--10946103	15	4.9	15	84	0	67	31	17	8	43	1.78
10946482--10946589	27	4.0	27	76	2	92	30	32	23	13	1.93
10946541--10946609	27	2.6	27	95	0	120	33	31	24	10	1.89
10967100--10967138	2	19.0	2	89	5	60	48	0	5	46	1.24
10972036--10972091	13	4.1	13	79	18	60	19	0	1	78	0.84
10972040--10972089	16	3.2	16	76	21	61	18	0	2	80	0.82
10972036--10972096	19	3.2	20	78	17	67	18	1	1	78	0.91
10973732--10973765	15	2.2	16	94	5	61	26	0	2	70	1.01
10973738--10973780	11	3.8	11	85	11	52	18	0	2	79	0.85
10976419--10976480	10	6.0	10	81	11	72	48	19	4	27	1.69
10977032--10977085	28	2.0	27	85	10	74	27	20	18	33	1.96
10978122--10978319	27	7.3	27	80	4	193	24	14	22	38	1.92
10978122--10978319	81	2.4	81	84	3	256	24	14	22	38	1.92
10981981--10982012	15	2.1	15	94	0	55	68	0	0	31	0.90
10982382--10982412	15	2.1	15	100	0	62	25	29	12	32	1.93
10992910--10992947	19	2.0	19	89	0	58	42	26	0	31	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10995721--10995764	22	2.0	22	81	0	52	40	18	9	31	1.81
10998142--10998195	28	1.9	28	88	7	83	35	18	14	31	1.91
10998956--10999032	31	2.5	31	93	2	129	20	16	29	32	1.95
11007610--11007640	16	1.9	16	93	0	53	64	0	0	35	0.94
11008834--11008863	2	15.0	2	100	0	60	50	0	0	50	1.00
11009980--11010035	22	2.5	22	100	0	112	30	25	3	41	1.72
11024602--11024640	16	2.4	17	82	4	53	56	2	2	38	1.27
11024620--11026065	724	2.0	721	96	2	2673	36	14	10	39	1.80
11027908--11027942	2	17.5	2	100	0	70	51	0	0	48	1.00
11027983--11028109	43	3.0	43	80	4	132	22	32	17	27	1.96
11029058--11029090	17	2.0	17	88	5	50	75	0	18	6	1.00
11035999--11036050	26	2.0	26	88	0	77	46	5	15	32	1.70
11046378--11046417	21	1.9	21	90	10	64	30	0	2	67	1.04
11052428--11052472	22	2.0	22	86	0	63	35	22	26	15	1.94
11054477--11054524	19	2.4	21	80	13	57	41	0	0	58	0.98
11054484--11054732	26	9.6	26	69	20	141	41	1	2	54	1.23
11054660--11054763	42	2.5	42	85	6	115	44	2	0	52	1.15
11054527--11054718	106	1.8	105	88	5	298	40	1	2	55	1.23
11054484--11054751	106	2.6	103	76	16	264	41	1	2	54	1.24
11066562--11066605	16	2.8	16	79	3	54	50	2	4	43	1.35
11070444--11070480	10	3.7	10	96	0	65	51	5	0	43	1.24
11070434--11070478	18	2.5	18	92	0	72	48	6	2	42	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11070433--11070480	8	6.0	8	87	0	60	47	6	2	43	1.40
11070433--11070480	6	8.0	6	83	0	60	47	6	2	43	1.40
11073486--11073547	17	3.5	17	72	20	63	17	20	46	14	1.83
11073475--11073553	37	2.1	37	95	0	140	18	25	43	12	1.86
11073607--11073645	2	19.5	2	94	0	69	51	0	48	0	1.00
11074902--11074993	13	7.2	13	70	21	61	71	4	3	20	1.17
11074920--11074963	23	1.9	23	86	9	63	75	2	6	15	1.12
11075213--11075282	15	5.1	14	74	17	51	68	0	8	22	1.16
11075228--11075280	15	3.2	16	75	20	56	69	0	5	24	1.09
11078715--11078874	83	1.9	83	93	0	275	25	13	26	34	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106