genome.fa.s2.2.7.7.80.10.50.1000.90.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  90  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34299709--34299761	28	1.9	27	88	3	79	30	18	22	28	1.98
34299709--34299767	28	2.1	28	84	6	75	30	20	23	25	1.98
34303454--34303511	27	2.2	26	81	6	62	32	12	10	44	1.75
34307569--34307683	38	3.0	38	92	0	185	41	15	8	33	1.78
34307623--34307686	19	3.4	19	63	16	51	43	14	4	37	1.66
34309360--34309403	9	4.9	9	81	10	54	45	6	2	45	1.42
34309492--34309549	22	2.4	25	76	23	63	41	13	0	44	1.44
34309503--34309549	23	2.1	22	88	11	69	42	14	0	42	1.46
34309585--34309796	116	1.8	116	82	8	270	41	6	1	50	1.39
34310441--34310487	23	2.0	23	87	0	67	27	8	36	27	1.86
34310500--34310622	58	2.1	58	86	0	183	26	13	33	27	1.93
34310516--34310669	58	2.7	58	82	4	159	26	15	32	25	1.95
34310614--34310824	47	4.5	47	82	2	237	27	22	29	20	1.99
34311042--34311066	7	3.6	7	100	0	50	12	44	0	44	1.41
34311496--34311601	31	3.4	31	92	0	167	23	19	16	39	1.92
34313933--34314131	84	2.4	84	90	0	317	24	32	20	22	1.98
34313933--34314134	42	4.8	42	88	0	287	24	33	20	22	1.97
34315362--34315644	151	1.9	146	80	8	320	31	21	17	29	1.96
34317608--34318077	124	4.0	119	78	10	375	29	28	20	22	1.98
34317688--34317889	62	3.3	61	64	16	146	29	28	19	23	1.98
34317787--34317996	106	2.0	106	85	1	287	30	30	15	23	1.95
34321576--34321715	31	4.5	31	83	0	172	38	19	15	26	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34321576--34321715	62	2.3	62	88	5	219	38	19	15	26	1.91
34322509--34322592	15	5.9	15	72	13	70	51	20	3	25	1.63
34322498--34322616	40	3.0	40	79	2	116	49	20	4	26	1.67
34324110--34324157	21	2.3	21	85	7	62	29	8	16	45	1.76
34324128--34324205	21	3.7	21	82	0	75	25	3	17	52	1.62
34325361--34325397	17	2.3	17	90	9	60	21	10	24	43	1.84
34332175--34332199	13	1.9	13	100	0	50	64	0	20	16	1.30
34332717--34332817	33	3.1	33	92	0	157	43	22	14	18	1.87
34341399--34341465	21	3.1	21	65	23	57	59	5	7	26	1.48
34341398--34341466	23	3.1	23	69	23	74	60	5	7	26	1.45
34343704--34343812	45	2.4	44	76	14	105	5	26	1	66	1.24
34343788--34343846	13	4.5	13	79	6	57	0	28	0	71	0.87
34343790--34343845	20	2.7	22	83	8	66	0	28	0	71	0.86
34343800--34343845	20	2.3	20	88	7	67	0	28	0	71	0.86
34343830--34343892	22	2.8	24	76	16	71	0	46	6	47	1.28
34343876--34343919	18	2.4	18	92	0	70	2	52	0	45	1.13
34343876--34343921	22	2.1	22	87	0	65	2	52	0	45	1.13
34344417--34344453	17	2.1	18	90	5	58	21	0	0	78	0.75
34344408--34344450	6	7.2	6	81	7	52	20	0	0	79	0.74
34352238--34352282	22	2.0	22	86	0	63	13	35	2	48	1.54
34356332--34356364	17	1.9	17	88	11	50	42	18	3	36	1.66
34356507--34356645	28	4.7	29	79	11	149	39	11	7	41	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34356517--34356645	59	2.2	59	86	4	181	42	10	6	39	1.67
34360693--34360738	21	2.2	20	88	3	74	30	39	8	21	1.84
34381479--34381554	39	1.9	39	84	5	100	25	32	6	35	1.82
34381479--34381565	39	2.2	38	80	9	95	26	33	5	34	1.80
34381659--34381684	9	2.9	9	100	0	52	46	11	0	42	1.40
34382017--34382246	124	1.9	124	87	3	347	44	13	9	33	1.76
34382385--34382426	22	2.0	22	85	4	59	35	7	16	40	1.76
34382569--34382611	20	2.2	20	100	0	86	46	18	18	16	1.84
34387588--34387674	30	3.0	28	77	9	95	29	17	19	33	1.95
34388682--34388727	19	2.4	20	82	10	60	54	0	2	43	1.12
34390545--34390569	13	1.9	13	100	0	50	44	0	8	48	1.32
34393675--34393716	20	2.1	20	95	0	75	35	19	7	38	1.79
34403695--34403768	6	12.3	6	83	0	85	51	1	27	20	1.55
34405238--34405273	2	18.0	2	100	0	72	50	0	0	50	1.00
34406225--34406273	25	2.0	25	91	0	80	30	22	20	26	1.98
34409356--34409397	2	21.0	2	100	0	84	50	0	0	50	1.00
34413267--34413458	96	2.0	96	100	0	384	23	8	26	41	1.82
34430296--34430516	111	2.0	110	96	0	406	23	18	18	40	1.91
34437225--34437280	18	3.1	19	82	12	73	69	0	1	28	0.98
34437226--34437288	23	2.8	23	81	11	69	69	0	1	28	0.97
34437225--34437294	9	7.8	9	74	17	56	71	0	1	27	0.94
34437225--34437294	18	3.8	19	80	10	67	71	0	1	27	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34456839--34456906	34	2.0	34	97	0	127	38	16	17	27	1.91
34458879--34458917	10	4.0	10	83	3	53	58	7	12	20	1.58
34459995--34460084	45	2.0	45	91	0	144	27	35	13	23	1.92
34468514--34468601	44	2.0	44	88	0	131	35	19	15	29	1.93
34475705--34475843	73	1.9	73	90	0	224	41	4	7	46	1.53
34480974--34481107	22	6.4	22	75	11	120	20	11	24	43	1.85
34481142--34481303	26	6.6	25	77	10	147	35	24	13	26	1.92
34481142--34481300	74	2.1	74	84	0	210	36	23	13	27	1.92
34481318--34481363	21	2.1	22	84	4	58	39	19	13	28	1.89
34484235--34484307	33	2.2	33	82	0	83	42	10	13	32	1.79
34491946--34492045	49	2.0	49	100	0	200	27	19	12	42	1.86
34496606--34496635	13	2.4	12	89	10	51	40	0	0	60	0.97
34497677--34497719	22	2.0	22	85	0	59	27	2	11	58	1.46
34500748--34500819	37	1.9	37	88	0	108	40	11	11	37	1.76
34522838--34523068	124	1.9	126	87	2	351	32	21	10	35	1.87
34541926--34542152	121	1.9	122	90	0	366	40	18	18	22	1.92
34550558--34550582	2	12.5	2	100	0	50	0	0	48	52	1.00
34557166--34557233	33	2.0	34	88	8	104	26	16	4	52	1.62
34564491--34564641	76	2.0	75	94	0	257	42	8	2	45	1.48
34564614--34564698	40	2.0	44	84	13	117	42	5	9	42	1.61
34567284--34567325	18	2.3	18	100	0	84	50	7	11	30	1.66
34569930--34569965	18	2.0	18	89	10	56	19	8	5	66	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34571406--34571455	20	2.5	20	80	6	57	40	14	14	32	1.85
34571541--34571660	60	2.0	60	88	1	177	38	18	8	35	1.81
34572112--34572185	38	1.9	37	89	10	114	40	9	20	29	1.84
34591022--34591093	1	72.0	1	91	0	117	2	95	1	0	0.29
34591365--34591397	12	2.8	12	95	0	57	36	9	6	48	1.60
34597513--34597560	14	3.0	17	66	27	50	27	4	10	58	1.49
34600722--34600906	92	2.0	92	97	0	352	20	22	22	35	1.96
34602877--34602915	20	2.0	20	94	0	69	56	15	10	17	1.66
34603820--34603892	16	4.7	16	80	13	73	53	1	1	43	1.17
34613618--34613680	30	2.1	30	85	8	83	30	6	0	63	1.19
34633968--34634010	20	2.2	20	83	8	52	9	6	6	76	1.15
34642675--34642706	2	16.0	2	100	0	64	50	0	0	50	1.00
34642706--34642754	2	24.5	2	100	0	98	51	0	48	0	1.00
34660082--34660150	18	3.8	18	72	1	57	36	8	8	46	1.66
34661115--34661159	20	2.2	20	100	0	90	17	33	0	48	1.48
34666112--34666180	18	3.6	18	80	11	68	28	7	0	63	1.21
34670986--34671057	36	2.0	35	83	2	90	40	8	9	41	1.68
34672246--34672310	30	2.2	30	78	13	73	40	15	21	23	1.91
34674639--34674675	18	2.0	19	89	5	58	51	8	10	29	1.65
34676258--34676360	28	3.7	28	94	1	172	34	18	17	29	1.94
34690004--34690050	21	2.2	21	85	7	60	46	2	42	8	1.46
34704173--34704199	2	13.5	2	100	0	54	0	51	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34711072--34711115	3	14.3	3	80	4	52	25	0	4	70	1.06
34723804--34724257	228	2.0	228	93	0	784	36	15	25	23	1.94
34725865--34726059	27	7.1	27	81	2	210	38	14	10	36	1.80
34725837--34726059	55	4.1	54	78	6	225	38	14	10	36	1.81
34725865--34726059	55	3.6	54	80	2	228	38	14	10	36	1.80
34725865--34726061	82	2.4	82	86	0	277	39	14	10	36	1.80
34726440--34726488	18	2.7	18	77	0	53	38	4	6	51	1.46
34728968--34731023	173	12.1	173	81	4	2239	31	20	10	36	1.88
34735083--34735135	28	1.9	28	88	3	81	49	0	0	50	1.00
34737730--34737844	56	2.1	56	96	0	212	33	14	22	28	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106