genome.fa.s2.2.7.7.80.10.50.1000.16.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  16  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7272406--7272436	2	15.5	2	93	0	53	51	3	0	45	1.17
7275913--7275949	15	2.3	17	86	9	51	32	13	21	32	1.92
7282970--7283003	3	11.3	3	100	0	68	0	35	0	64	0.94
7288545--7288573	2	14.5	2	100	0	58	0	51	0	48	1.00
7291000--7291116	61	1.9	61	98	0	225	29	25	11	32	1.92
7295877--7295918	19	2.2	19	83	8	50	42	7	19	30	1.78
7296504--7296738	125	1.9	125	83	1	310	36	14	15	33	1.89
7301650--7301716	24	2.8	24	70	17	66	46	0	4	49	1.22
7301946--7301989	20	2.1	21	91	8	72	56	4	0	38	1.20
7301947--7301998	26	1.9	27	81	14	63	55	3	0	40	1.18
7301952--7302004	20	2.7	20	88	5	72	54	5	0	39	1.24
7308166--7308326	80	2.0	80	100	0	322	42	11	23	22	1.86
7315522--7315554	2	17.0	2	87	6	50	48	3	0	48	1.17
7316221--7316399	87	2.0	89	85	6	240	44	10	13	32	1.77
7320221--7320262	22	2.0	22	86	9	61	16	7	2	73	1.15
7330981--7331021	20	2.0	20	95	0	73	21	0	0	78	0.76
7330983--7331024	14	2.9	14	89	7	57	21	0	0	78	0.75
7331067--7331155	2	47.5	2	80	12	91	41	1	2	53	1.20
7331064--7331155	13	7.1	13	82	7	98	41	1	2	54	1.20
7332251--7332297	20	2.5	19	79	6	51	25	0	2	72	0.96
7333067--7333103	17	2.2	17	90	0	56	32	5	2	59	1.34
7346341--7346370	3	10.0	3	100	0	60	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7347091--7347133	21	2.0	21	86	0	59	27	34	4	32	1.78
7349565--7349607	2	21.5	2	100	0	86	48	0	0	51	1.00
7355092--7355157	16	3.8	17	78	13	73	75	0	0	24	0.80
7355092--7355157	33	2.0	32	85	8	89	75	0	0	24	0.80
7355117--7355157	9	4.4	9	84	6	55	80	0	0	19	0.71
7361010--7361214	96	2.1	98	86	7	283	18	17	23	40	1.90
7361148--7361698	34	16.3	32	75	10	338	21	18	20	39	1.93
7361148--7361699	68	8.1	68	75	7	390	21	18	20	39	1.93
7361145--7361652	135	3.8	136	79	4	483	21	18	21	38	1.93
7361773--7361958	34	5.2	34	74	12	140	26	17	19	37	1.93
7361773--7361958	68	2.6	70	77	10	189	26	17	19	37	1.93
7362486--7362531	17	2.7	17	86	0	56	4	28	2	65	1.23
7362503--7362539	17	2.2	17	100	0	74	5	24	5	64	1.36
7362778--7362935	79	2.0	79	84	0	208	39	8	12	39	1.73
7363428--7363492	31	2.1	31	97	0	121	30	9	13	46	1.75
7363647--7363866	117	1.8	118	83	9	286	31	6	0	60	1.29
7370609--7370659	26	1.9	27	84	4	68	47	23	1	27	1.63
7372464--7372570	39	2.7	39	82	0	115	30	18	21	28	1.97
7374261--7374300	21	2.0	20	85	5	53	67	10	12	10	1.42
7375464--7375521	22	2.6	22	97	0	107	36	15	22	25	1.94
7377413--7377452	2	20.0	2	100	0	80	50	0	0	50	1.00
7390811--7390857	16	2.9	16	80	0	58	57	8	2	31	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7392540--7393492	216	4.4	216	86	2	1222	29	15	24	30	1.96
7401479--7401572	2	49.5	2	85	14	137	50	0	0	48	1.00
7404196--7404230	7	5.0	7	96	0	61	31	42	11	14	1.81
7410670--7410721	27	2.0	26	81	11	61	55	1	5	36	1.35
7412222--7412267	18	2.6	18	89	3	67	58	8	21	10	1.58
7412233--7412270	18	2.1	18	100	0	76	55	13	21	10	1.67
7412642--7412680	16	2.4	16	87	12	62	38	2	0	58	1.12
7412684--7412726	21	2.0	22	82	13	54	48	0	6	44	1.29
7418255--7418311	30	1.9	30	92	0	96	33	3	45	15	1.63
7418407--7418456	18	2.8	17	76	11	55	46	8	2	44	1.44
7418407--7418456	19	2.7	19	72	15	50	46	8	2	44	1.44
7420987--7421165	89	2.0	90	93	1	306	39	12	21	26	1.89
7442687--7442800	59	1.9	59	87	0	165	35	13	24	26	1.92
7453622--7453655	2	17.0	2	87	0	50	50	2	47	0	1.16
7460007--7460032	2	13.0	2	100	0	52	0	50	0	50	1.00
7460433--7460457	2	12.5	2	100	0	50	52	0	0	48	1.00
7468802--7468848	24	2.0	23	83	4	58	65	4	23	6	1.33
7468948--7469011	2	31.5	2	87	6	85	48	1	3	45	1.27
7481910--7481965	14	3.9	14	81	6	58	58	0	0	41	0.98
7481910--7481965	30	1.9	30	85	7	80	58	0	0	41	0.98
7485018--7485100	33	2.5	33	73	7	87	44	14	1	39	1.53
7516323--7516355	2	16.5	2	100	0	66	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7517447--7517503	22	2.5	23	73	18	57	31	8	14	45	1.75
7517538--7517576	20	2.0	20	85	10	53	35	7	0	56	1.28
7517891--7517924	13	2.6	13	90	0	50	35	0	23	41	1.55
7525895--7525926	15	2.2	15	94	5	57	50	0	0	50	1.00
7528478--7528666	63	3.0	63	96	0	351	28	32	4	33	1.78
7539566--7539710	36	4.0	36	76	7	89	23	24	16	35	1.95
7540833--7540882	20	2.5	19	81	12	55	74	0	16	10	1.08
7548365--7548424	23	2.7	22	78	12	61	16	10	1	71	1.21
7549038--7549110	29	2.5	29	77	16	80	38	5	1	54	1.32
7555731--7555781	26	1.9	27	84	11	70	5	35	1	56	1.35
7555879--7555908	15	2.0	15	100	0	60	33	33	20	13	1.91
7556224--7556296	36	2.0	37	83	2	94	39	32	20	6	1.79
7559850--7559916	24	2.8	24	73	8	73	22	1	23	52	1.56
7560019--7560059	18	2.2	20	82	8	50	14	2	26	56	1.51
7560263--7560296	14	2.5	14	95	4	61	44	0	17	38	1.49
7568906--7568985	28	2.9	28	83	1	99	28	17	15	38	1.90
7574034--7574062	14	2.1	14	100	0	58	44	13	6	34	1.71
7574072--7574124	26	2.0	26	96	0	97	33	16	26	22	1.96
7574902--7574930	15	1.9	15	100	0	58	72	0	0	27	0.85
7575368--7575430	22	2.5	26	82	12	80	44	1	1	52	1.20
7577681--7577706	2	13.0	2	100	0	52	50	50	0	0	1.00
7579310--7579343	2	17.5	2	87	6	52	50	0	2	47	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7581790--7581877	30	2.9	30	87	1	122	13	17	29	39	1.88
7588006--7588032	14	1.9	14	100	0	54	59	7	7	25	1.51
7588499--7588531	14	2.3	15	89	5	50	60	18	6	15	1.54
7594876--7594921	13	3.5	13	82	11	58	58	10	2	28	1.43
7595280--7595351	28	2.6	28	81	0	99	20	19	18	41	1.90
7595344--7595400	25	2.3	25	76	11	71	31	14	10	43	1.79
7601439--7601532	15	6.5	15	70	20	58	52	0	2	45	1.12
7603212--7603256	22	2.0	22	100	0	90	26	24	44	4	1.72
7603659--7603726	31	2.3	30	83	14	81	35	2	0	61	1.11
7603669--7603720	25	2.1	25	82	7	61	34	3	0	61	1.14
7603984--7604049	31	2.2	30	86	5	89	65	1	0	33	1.02
7609990--7610041	15	3.5	15	82	12	63	26	0	0	73	0.84
7610183--7610212	16	1.9	16	93	6	53	30	0	6	63	1.20
7610184--7610221	16	2.4	16	86	4	51	36	0	2	60	1.11
7611290--7611357	19	3.5	20	76	13	61	69	10	7	13	1.37
7611991--7612035	10	4.3	10	83	8	54	28	2	2	66	1.15
7612002--7612034	11	3.1	11	86	4	50	24	0	3	72	0.98
7612002--7612042	21	2.0	21	85	0	55	31	0	2	65	1.05
7613510--7613547	12	3.2	12	88	7	51	0	73	0	26	0.83
7621646--7621675	14	2.1	15	93	6	53	83	0	0	16	0.65
7621706--7621783	22	3.6	22	71	13	63	38	6	0	55	1.26
7621774--7621824	27	1.9	27	84	11	70	35	0	1	62	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7621800--7621831	16	2.1	16	94	5	57	34	0	0	65	0.93
7625335--7625392	25	2.3	25	96	0	107	41	6	6	44	1.58
7626020--7626071	21	2.4	22	78	12	63	36	15	9	38	1.80
7626324--7626769	224	2.0	224	88	0	660	44	7	22	25	1.79
7627796--7627924	28	4.6	28	89	1	170	38	16	20	24	1.92
7632222--7632473	126	2.0	126	100	0	504	30	18	4	46	1.70
7633499--7633545	23	2.0	23	100	0	94	31	17	12	38	1.87
7633598--7633663	4	16.5	4	73	19	50	72	1	24	1	1.01
7633692--7633778	41	2.1	42	89	6	133	48	0	8	42	1.32
7642708--7643128	207	2.0	209	88	2	632	25	14	17	42	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106