genome.fa.s2.2.7.7.80.10.50.1000.81.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  81  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30728592--30728616	13	1.9	13	100	0	50	44	0	8	48	1.32
30740085--30740113	11	2.5	12	88	11	51	31	13	13	41	1.84
30740197--30740247	26	2.0	26	88	0	75	29	7	17	45	1.77
30742679--30742746	6	11.3	6	90	0	109	19	29	0	51	1.47
30748863--30748893	12	2.6	12	89	0	53	48	16	0	35	1.46
30751956--30752245	145	2.0	144	99	0	571	46	11	9	32	1.72
30756737--30756782	2	23.0	2	95	0	83	47	0	0	52	1.00
30762067--30762106	20	2.0	20	90	0	62	40	15	5	40	1.68
30771677--30771718	19	2.2	19	87	8	59	50	4	23	21	1.68
30773411--30773461	2	25.5	2	91	0	84	47	0	0	52	1.00
30774550--30774608	4	15.2	4	76	16	54	69	0	30	0	0.89
30774539--30774617	28	2.8	28	81	12	99	69	0	30	0	0.89
30774539--30774619	14	6.2	14	65	23	52	69	0	30	0	0.89
30774542--30774618	10	7.6	10	76	15	52	70	0	29	0	0.88
30774539--30774619	8	10.4	8	74	20	57	69	0	30	0	0.89
30775364--30775418	2	27.5	2	100	0	110	50	0	0	49	1.00
30782605--30782644	11	3.5	12	83	10	57	75	0	25	0	0.81
30782605--30782650	23	2.0	22	87	4	65	71	0	26	2	0.97
30785613--30785733	37	3.1	37	80	17	154	23	38	10	27	1.88
30785627--30785718	43	2.1	43	94	6	159	22	42	8	26	1.82
30787596--30788544	478	2.0	467	92	2	1592	31	18	12	38	1.88
30789627--30789694	21	3.2	21	85	0	91	23	13	23	39	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30810471--30810503	15	2.2	15	89	10	50	57	3	0	39	1.14
30815194--30815267	36	2.1	36	100	0	148	25	16	22	35	1.95
30818379--30818403	4	6.2	4	100	0	50	24	0	0	76	0.80
30827051--30827113	26	2.4	26	75	0	63	26	11	12	49	1.74
30827168--30827229	24	2.6	24	92	0	97	25	11	20	41	1.86
30827091--30827275	69	2.6	69	82	6	210	29	15	18	37	1.91
30828326--30828421	7	12.9	7	72	23	56	12	8	1	78	1.02
30828350--30828381	17	1.9	16	93	6	55	12	12	0	75	1.06
30836717--30836837	30	4.7	26	67	20	74	65	0	4	28	1.19
30836812--30836897	34	2.6	34	88	1	120	67	2	3	26	1.19
30850821--30850891	24	3.0	24	82	13	69	47	0	0	52	1.00
30850821--30850901	25	3.2	25	74	25	73	46	0	0	53	1.00
30850832--30850908	25	3.2	24	80	12	79	48	0	0	51	1.00
30853178--30853240	16	4.0	15	76	17	65	50	1	1	46	1.20
30853246--30853279	17	2.0	17	88	0	50	50	2	2	44	1.32
30853178--30853302	43	2.8	45	78	11	132	49	1	1	47	1.20
30857044--30857150	41	2.6	41	82	1	126	39	11	12	37	1.78
30857398--30857459	26	2.5	24	81	7	61	56	19	1	22	1.51
30861911--30861996	36	2.4	36	82	7	95	65	8	1	25	1.28
30861976--30862116	40	3.5	40	84	0	165	59	15	2	22	1.47
30862117--30862152	16	2.2	17	90	5	56	38	0	5	55	1.23
30862642--30862674	2	17.0	2	87	6	50	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30862683--30862715	16	2.1	17	88	11	52	39	0	6	54	1.25
30868110--30868147	17	2.3	17	86	13	53	18	0	2	78	0.86
30868209--30868241	16	2.1	16	88	5	50	75	0	3	21	0.93
30869605--30869672	21	3.2	21	82	2	82	25	19	17	38	1.93
30873885--30873909	13	1.9	13	100	0	50	48	8	0	44	1.32
30879501--30879547	15	3.1	15	96	0	85	51	6	29	12	1.65
30881082--30881108	13	2.1	13	100	0	54	48	7	0	44	1.31
30887114--30887146	5	6.8	5	86	6	50	39	18	0	42	1.50
30888423--30888449	13	2.1	13	100	0	54	48	7	0	44	1.31
30890803--30890852	24	2.2	22	82	7	55	64	4	16	16	1.44
30893964--30893997	18	1.9	17	93	0	50	47	5	8	38	1.59
30895208--30895245	19	2.0	19	94	0	67	44	28	0	26	1.54
30906503--30906547	23	2.0	23	91	8	74	31	44	2	22	1.65
30906539--30906670	43	3.1	43	82	4	151	21	36	18	22	1.95
30908457--30908498	14	2.8	15	85	10	59	59	0	0	40	0.97
30908724--30908775	24	2.2	24	82	6	61	65	9	25	0	1.23
30909222--30909276	5	11.6	5	90	9	73	78	1	20	0	0.85
30916955--30916987	5	6.8	5	93	6	59	39	21	0	39	1.53
30916955--30916987	14	2.3	15	94	5	59	39	21	0	39	1.53
30917022--30917067	15	3.1	15	81	12	58	56	17	2	23	1.52
30918268--30918292	13	1.9	13	100	0	50	48	8	0	44	1.32
30921966--30922217	126	2.0	125	99	0	495	35	15	13	34	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30927488--30927530	21	2.0	21	90	0	68	55	0	20	23	1.43
30927729--30927835	39	2.7	39	89	0	169	42	16	3	36	1.66
30930434--30930536	38	2.6	40	82	8	131	22	41	16	19	1.90
30930434--30930532	19	5.1	18	67	9	54	21	41	17	20	1.90
30933145--30933249	45	2.4	42	77	14	106	47	1	5	44	1.37
30933153--30933246	45	2.1	45	84	7	120	46	2	6	44	1.40
30933284--30933357	23	3.3	22	73	14	78	52	4	2	40	1.34
30934417--30934468	14	3.8	14	75	12	54	21	0	15	63	1.31
30936319--30936388	34	2.1	34	100	0	140	37	11	18	32	1.87
30941795--30941833	20	2.0	18	85	14	51	30	0	12	56	1.37
30941784--30941845	18	3.5	18	73	14	58	33	0	11	54	1.36
30943308--30943358	25	2.0	25	88	7	77	21	17	3	56	1.57
30945447--30945605	63	2.5	61	81	5	183	26	17	30	25	1.97
30946908--30946991	39	2.2	39	86	4	116	50	9	3	36	1.53
30946920--30947000	39	2.0	40	90	6	130	49	8	2	39	1.47
30949431--30949600	84	2.0	84	84	0	223	14	25	13	45	1.82
30952241--30952279	20	2.0	20	89	0	60	23	7	35	33	1.83
30952317--30952430	48	2.4	48	89	0	165	28	12	18	40	1.87
30952317--30952393	26	3.1	25	72	14	79	28	11	19	40	1.87
30952412--30952445	15	2.3	15	94	0	59	32	14	14	38	1.87
30953503--30953736	61	3.8	61	81	2	270	34	20	11	34	1.88
30953810--30953868	29	2.0	29	100	0	118	45	20	6	27	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30955750--30955796	23	2.0	23	83	0	58	40	25	6	27	1.80
30955822--30955879	23	2.5	23	82	0	62	37	27	12	22	1.89
30957966--30958014	24	2.0	24	84	7	64	20	32	18	28	1.96
30958211--30958256	24	1.9	24	86	0	65	41	19	28	10	1.85
30967144--30967210	31	2.2	30	84	12	84	50	8	10	29	1.67
30975746--30975778	2	16.5	2	93	0	57	45	3	0	51	1.16
30980426--30980465	18	2.2	18	86	0	53	80	5	12	2	0.98
30999707--30999766	30	2.1	29	81	6	68	31	8	21	38	1.83
31007426--31007472	21	2.2	20	78	10	58	14	21	6	57	1.60
31007431--31007471	21	1.9	22	90	5	66	17	24	7	51	1.70
31015170--31015212	17	2.6	16	89	10	68	16	37	16	30	1.91
31026955--31026986	12	2.6	13	80	19	50	18	9	0	71	1.12
31026969--31027003	17	2.0	18	94	5	63	14	11	0	74	1.08
31027193--31027235	3	14.3	3	85	0	59	27	2	2	67	1.15
31028567--31028613	18	2.6	18	82	0	58	76	4	6	12	1.12
31029449--31029486	20	2.0	20	84	5	51	26	13	7	52	1.67
31036768--31036792	12	2.1	12	100	0	50	68	0	8	24	1.16
31038844--31038996	43	3.6	43	88	1	218	22	37	16	22	1.94
31044805--31044834	11	2.7	11	89	0	51	83	3	6	6	0.90
31044804--31044843	21	2.0	20	85	14	55	80	5	10	5	1.02
31046432--31046504	21	3.3	23	75	12	73	32	24	8	34	1.85
31046678--31046739	21	2.9	22	80	4	72	33	33	6	25	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31046677--31046781	22	4.8	22	74	9	88	33	29	7	29	1.85
31046821--31046904	32	2.6	32	98	1	159	26	9	28	35	1.88
31048942--31048981	14	2.8	15	79	20	50	80	5	0	15	0.88
31086240--31086291	21	2.4	21	81	12	61	42	11	11	34	1.77
31088560--31088683	42	3.0	42	82	0	140	24	19	32	24	1.98
31092471--31092556	33	2.6	33	81	0	100	30	4	0	65	1.13
31093386--31093463	2	39.5	2	86	7	88	46	2	1	46	1.25
31103242--31103296	28	2.0	28	85	0	74	60	18	1	20	1.46
31106404--31106657	138	1.8	137	82	6	325	25	12	42	19	1.86
31106810--31106835	7	3.7	7	100	0	52	26	26	15	30	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106