genome.fa.s2.2.7.7.80.10.50.1000.22.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  22  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9416903--9417064	30	5.5	28	79	8	144	40	7	9	43	1.65
9416910--9417074	89	1.9	89	84	5	226	43	7	9	40	1.66
9419370--9419403	15	2.3	15	89	0	50	76	2	0	20	0.92
9420015--9420259	123	2.0	121	98	1	472	36	16	14	31	1.89
9424421--9424451	15	2.1	15	93	0	53	6	29	0	64	1.18
9435008--9435052	22	2.0	23	91	4	74	22	31	20	26	1.98
9435107--9435159	24	2.2	24	93	0	88	28	15	13	43	1.84
9435609--9435648	22	1.9	21	90	10	64	30	7	0	62	1.23
9436293--9436333	2	20.5	2	100	0	82	48	0	0	51	1.00
9436585--9436619	3	11.7	3	93	0	61	28	0	2	68	1.04
9439390--9439473	22	3.9	21	75	6	69	47	19	7	26	1.74
9439594--9439721	60	2.1	60	86	0	184	42	17	7	32	1.76
9442430--9442471	22	1.9	22	85	9	59	14	11	7	66	1.43
9446638--9446673	2	17.5	2	88	5	54	0	44	2	52	1.15
9446640--9446672	17	1.9	17	93	0	57	0	45	3	51	1.16
9447555--9447594	2	20.0	2	100	0	80	50	0	0	50	1.00
9447607--9447641	2	17.5	2	100	0	70	51	0	0	48	1.00
9449812--9450490	363	1.9	363	99	0	1333	43	7	13	35	1.72
9450524--9450557	17	2.0	17	88	0	50	52	5	5	35	1.50
9450874--9450907	17	2.0	17	88	0	50	55	2	5	35	1.39
9451002--9451045	16	2.6	17	82	3	54	79	4	0	15	0.89
9453038--9453066	1	29.0	1	100	0	58	100	0	0	0	0.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9453832--9453857	2	13.0	2	100	0	52	0	50	0	50	1.00
9455136--9455237	53	2.0	52	82	5	127	40	20	6	32	1.79
9455162--9455262	53	1.9	51	86	7	141	36	21	9	31	1.87
9456885--9457047	79	2.1	79	92	2	274	22	14	41	20	1.89
9457488--9457529	2	20.5	2	85	4	57	47	4	2	45	1.36
9457788--9457822	2	18.5	2	88	11	56	51	0	0	48	1.00
9458425--9458464	20	2.1	19	90	4	62	70	0	0	30	0.88
9458192--9458658	233	2.0	233	91	2	769	43	12	13	29	1.81
9470308--9470784	60	7.9	59	83	4	456	31	12	20	35	1.90
9470308--9470783	121	3.9	120	77	8	378	31	12	20	35	1.90
9471042--9471090	18	3.1	16	76	18	50	77	0	6	16	0.96
9472248--9472285	14	2.8	13	92	8	58	47	7	0	44	1.32
9475493--9475523	14	2.3	14	94	5	55	58	0	0	41	0.98
9483997--9484030	11	3.0	12	83	16	54	41	0	0	58	0.98
9484663--9484694	2	16.5	2	93	6	57	50	0	0	50	1.00
9487378--9487535	65	2.4	65	75	7	158	27	26	13	32	1.94
9499764--9499811	25	1.9	25	87	8	71	81	12	2	4	0.93
9499999--9500050	4	12.2	4	76	11	50	65	0	34	0	0.93
9499994--9500059	22	3.0	22	77	16	75	62	0	37	0	0.96
9499987--9500062	18	4.0	18	79	17	82	64	0	35	0	0.94
9500128--9500217	43	2.1	44	93	6	157	66	6	23	2	1.26
9502564--9502608	4	11.8	4	81	9	58	73	0	2	24	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9502564--9502610	11	4.2	11	80	2	58	74	0	2	23	0.93
9503578--9503611	15	2.2	16	89	5	52	76	0	0	23	0.79
9503578--9503611	16	2.2	16	89	5	52	76	0	0	23	0.79
9504903--9504936	15	2.3	15	94	0	59	70	0	0	29	0.87
9506566--9506611	18	2.6	18	92	0	74	21	10	19	47	1.80
9506800--9506876	19	4.1	19	69	14	61	45	0	1	53	1.08
9508937--9509025	3	31.7	3	71	22	61	26	4	0	68	1.08
9508927--9509028	14	7.7	14	69	19	67	26	3	0	69	1.05
9508933--9509022	9	9.5	10	72	18	68	26	4	0	68	1.08
9509030--9509076	24	1.9	25	86	4	69	23	12	0	63	1.28
9509258--9509305	24	1.9	26	83	8	64	25	12	0	62	1.30
9509006--9509459	229	2.0	227	97	1	865	31	7	4	57	1.45
9509445--9509506	9	6.6	10	73	10	51	24	4	1	69	1.17
9511166--9511428	74	3.5	74	82	2	312	44	20	13	21	1.85
9511167--9511428	37	7.1	37	81	3	267	44	20	13	21	1.86
9511166--9511428	111	2.4	112	83	4	336	44	20	13	21	1.85
9523278--9523386	3	38.3	3	74	20	69	26	3	0	69	1.05
9523278--9523389	14	7.7	15	73	19	62	26	3	0	69	1.04
9523326--9523385	20	2.8	21	76	18	70	25	3	0	71	1.01
9523335--9523401	24	2.8	24	78	17	68	25	4	0	70	1.06
9523278--9523391	17	6.0	19	69	21	71	27	3	0	69	1.05
9524277--9524329	24	2.2	25	77	16	58	15	9	1	73	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9536416--9536474	28	2.1	28	90	0	91	33	3	1	61	1.23
9537105--9537479	109	3.4	106	80	10	346	56	4	0	38	1.26
9537115--9537479	113	3.2	112	81	10	408	55	4	0	38	1.27
9537370--9537426	27	2.2	26	81	9	64	49	7	0	43	1.29
9537654--9537705	28	2.0	27	85	11	72	46	3	1	48	1.31
9538600--9538673	28	2.7	27	77	8	78	32	1	2	63	1.17
9538834--9538876	17	2.4	18	84	11	61	74	0	2	23	0.93
9539388--9539520	28	4.8	28	76	12	130	45	0	4	49	1.27
9540369--9540464	20	4.1	24	69	20	69	56	1	0	42	1.06
9540394--9540462	26	2.6	27	86	11	97	57	1	0	40	1.07
9540394--9540459	27	2.5	26	87	9	89	59	1	0	39	1.07
9542848--9542973	43	2.9	43	87	1	180	40	14	13	31	1.84
9543086--9543397	23	13.5	23	69	13	108	34	10	21	32	1.88
9543084--9543397	138	2.3	139	81	6	352	34	10	21	32	1.88
9543313--9543408	46	2.0	48	88	7	144	33	10	19	36	1.86
9543340--9543436	23	4.1	24	75	10	76	42	9	18	29	1.82
9565081--9565126	24	2.0	23	82	4	56	39	6	26	28	1.81
9568154--9568325	66	2.6	67	83	3	222	29	11	26	32	1.91
9568132--9568325	66	2.9	66	81	7	216	27	10	27	34	1.90
9569965--9570011	2	23.5	2	100	0	94	51	0	0	48	1.00
9570107--9570148	2	21.0	2	100	0	84	50	0	0	50	1.00
9569877--9570148	142	1.9	141	100	0	535	41	5	7	44	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9578836--9578873	17	2.2	17	90	0	58	73	0	2	23	0.95
9579688--9579745	30	1.9	30	100	0	116	50	10	15	24	1.75
9587026--9587063	5	7.4	5	91	8	51	76	0	0	23	0.79
9587114--9587203	12	7.7	12	70	18	73	71	0	2	26	0.98
9587112--9587201	21	4.1	21	80	16	103	72	0	2	25	0.96
9592060--9592087	5	5.6	5	100	0	56	0	17	0	82	0.68
9593882--9593927	19	2.4	20	82	10	60	56	0	0	43	0.99
9609488--9609717	116	2.0	116	91	0	370	37	12	13	36	1.82
9613891--9613920	13	2.3	13	94	0	51	36	6	13	43	1.70
9618932--9619125	101	1.9	101	93	0	334	30	6	18	44	1.75
9620105--9620175	35	2.0	35	86	0	97	30	8	4	56	1.48
9620772--9620874	38	2.6	40	81	3	120	20	14	39	25	1.90
9624516--9624541	2	13.0	2	100	0	52	50	0	0	50	1.00
9647233--9647276	19	2.3	19	88	0	61	0	13	13	72	1.12
9647390--9647437	11	4.5	11	84	2	62	27	0	58	14	1.37
9650740--9650807	33	2.1	33	100	0	136	30	17	11	39	1.86
9651237--9651278	18	2.3	18	87	0	57	28	19	7	45	1.76
9652389--9652427	20	2.0	20	84	0	51	35	5	7	51	1.53
9654981--9655036	23	2.4	24	82	17	73	30	0	3	66	1.09
9654995--9655033	12	3.2	12	85	10	53	28	0	5	66	1.12
9665322--9665375	25	2.2	24	78	18	58	22	3	1	72	1.10
9665709--9665741	11	3.1	11	95	4	59	27	0	0	72	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9681339--9681372	3	10.7	3	87	12	50	35	0	0	64	0.94
9681570--9681702	63	2.1	65	83	8	166	33	7	0	58	1.31
9683453--9683492	21	2.0	20	85	5	53	40	12	22	25	1.89
9686409--9686436	2	14.0	2	100	0	56	50	0	0	50	1.00
9689347--9689389	9	5.1	8	81	18	52	74	0	0	25	0.82
9689345--9689396	23	2.3	23	93	0	86	75	1	0	23	0.91
9689345--9689396	15	3.4	16	82	15	65	75	1	0	23	0.91
9689496--9689544	7	6.6	7	80	17	55	71	0	2	26	0.97
9689481--9689547	4	18.2	4	79	16	58	70	0	1	28	0.96
9689489--9689548	15	4.2	14	83	14	79	70	0	1	28	0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106