genome.fa.s2.2.7.7.80.10.50.1000.53.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  53  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20090833--20090869	2	18.5	2	94	0	65	48	2	0	48	1.15
20105943--20106008	33	2.0	33	93	0	114	31	24	6	37	1.80
20106478--20106581	31	3.2	31	65	28	79	33	21	9	35	1.86
20106367--20106698	68	4.9	67	84	8	381	34	18	11	36	1.86
20107683--20107817	72	1.9	72	89	3	209	34	17	14	34	1.90
20108958--20109037	21	3.9	21	80	4	101	37	16	12	33	1.86
20112573--20112616	16	2.8	16	80	10	54	65	6	0	27	1.17
20112574--20112626	17	3.2	17	73	23	51	64	7	0	28	1.21
20114024--20114064	21	2.1	19	86	9	55	60	9	0	29	1.28
20116723--20116831	35	3.2	34	78	19	129	33	26	11	28	1.90
20116664--20116851	67	2.8	67	86	3	254	36	26	12	24	1.91
20116709--20116851	35	4.3	32	75	15	128	37	27	11	23	1.90
20126655--20126800	35	4.4	32	74	10	123	36	27	12	23	1.91
20126628--20126803	67	2.6	67	88	3	257	35	26	12	25	1.91
20127593--20127642	25	2.0	25	100	0	100	36	20	12	32	1.89
20131282--20131336	24	2.3	24	100	0	110	21	41	14	21	1.89
20134735--20134832	31	3.2	31	79	12	96	31	23	4	40	1.73
20135848--20135937	46	2.0	46	93	0	153	26	12	16	44	1.83
20139840--20139883	22	2.0	22	100	0	88	54	9	0	36	1.32
20140523--20140603	40	2.0	40	95	0	144	70	8	13	7	1.33
20143117--20143172	24	2.3	25	87	3	78	14	0	30	55	1.40
20143889--20144043	71	2.2	69	82	6	188	40	13	18	27	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20143925--20144236	170	1.8	172	86	3	459	42	14	16	26	1.87
20148559--20148588	2	15.0	2	92	0	51	46	3	0	50	1.18
20149080--20149151	25	2.8	25	80	4	90	16	23	15	44	1.86
20149159--20149198	5	7.8	5	84	15	55	2	17	0	80	0.83
20149160--20149206	10	4.6	10	80	15	51	2	21	0	76	0.89
20149160--20149201	16	2.7	16	79	17	52	2	19	0	78	0.86
20149159--20149198	21	2.0	21	90	5	64	2	17	0	80	0.83
20153403--20153444	20	2.1	20	100	0	84	9	40	9	40	1.70
20155995--20156056	25	2.5	25	89	0	88	17	22	11	48	1.79
20156192--20156316	34	3.7	34	92	0	196	31	24	14	29	1.95
20156192--20156337	34	4.3	34	87	0	193	31	23	13	30	1.94
20157725--20157812	42	2.1	42	89	0	131	27	20	31	20	1.97
20157734--20157850	42	2.8	42	83	6	137	26	17	33	22	1.96
20165273--20165299	3	9.0	3	100	0	54	33	33	0	33	1.58
20166269--20166296	14	2.0	14	100	0	56	28	7	14	50	1.69
20166764--20166894	43	3.1	43	82	1	147	22	35	16	25	1.95
20193691--20193859	67	2.5	68	92	1	277	42	5	4	47	1.47
20196362--20196456	40	2.4	40	90	0	154	22	14	30	32	1.94
20196774--20196967	44	3.9	46	80	18	203	42	0	1	56	1.10
20196786--20196882	23	4.4	22	70	23	53	41	0	2	56	1.11
20196821--20196989	53	3.1	55	85	10	247	40	0	1	57	1.11
20196768--20196989	100	2.1	105	86	8	312	42	0	0	56	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20196886--20196979	18	5.0	19	67	29	51	41	1	0	57	1.06
20207274--20207315	21	2.0	21	95	0	75	52	2	0	45	1.13
20216527--20216589	20	3.2	20	90	2	101	30	41	3	25	1.71
20216588--20216706	43	2.8	43	89	2	168	19	37	21	21	1.94
20219209--20219238	15	2.0	15	100	0	60	33	13	33	20	1.91
20220389--20220489	25	4.3	23	75	14	82	43	1	0	54	1.11
20220432--20220525	40	2.4	41	79	15	108	42	2	0	55	1.12
20220397--20220509	15	7.7	15	68	16	67	44	1	0	53	1.10
20220388--20220493	48	2.2	49	78	9	121	43	1	0	54	1.11
20220566--20220596	16	1.9	16	93	0	53	54	0	0	45	0.99
20220618--20220655	16	2.4	16	78	4	51	55	0	2	42	1.14
20221199--20221309	32	3.4	32	75	11	116	23	10	28	36	1.89
20221163--20221336	67	2.6	67	89	5	262	25	12	27	35	1.92
20221167--20221330	32	4.8	33	69	15	104	25	13	26	34	1.93
20227236--20227371	43	3.2	43	89	2	193	22	36	16	24	1.95
20228473--20228502	2	15.0	2	100	0	60	0	50	0	50	1.00
20228532--20228575	22	2.0	23	95	4	81	2	31	0	65	1.05
20228554--20228679	60	2.1	59	86	1	171	4	31	7	56	1.47
20228656--20228714	19	3.2	18	72	25	52	0	35	0	64	0.94
20233644--20233707	19	3.4	19	65	8	58	21	20	40	17	1.91
20233641--20233742	38	2.6	39	89	3	143	21	20	39	18	1.93
20251203--20251248	21	2.2	20	84	7	56	15	21	6	56	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20251208--20251248	21	1.9	22	90	5	66	17	24	7	51	1.70
20254714--20254793	38	2.1	38	83	4	97	21	37	17	23	1.94
20254930--20254963	2	17.0	2	100	0	68	50	0	0	50	1.00
20261978--20262071	38	2.4	38	85	3	125	21	41	18	19	1.90
20262956--20263005	19	2.6	19	75	12	57	46	8	36	10	1.67
20268929--20269041	58	1.9	58	85	0	154	29	18	11	40	1.86
20269063--20269101	19	2.1	19	95	4	71	51	5	23	20	1.67
20271711--20271766	26	2.2	26	90	0	85	21	30	8	39	1.84
20271982--20272043	27	2.3	27	83	5	72	27	14	17	40	1.89
20272156--20272224	27	2.5	27	76	2	66	36	10	17	36	1.84
20272278--20272356	26	3.0	26	70	7	77	31	15	11	41	1.82
20273173--20273388	39	5.6	39	87	1	267	26	34	12	26	1.92
20274537--20274595	26	2.3	26	79	5	66	66	3	28	1	1.18
20277194--20277239	20	2.3	21	85	11	69	71	0	28	0	0.86
20280241--20280354	44	2.6	44	86	5	124	37	15	14	31	1.89
20280241--20280354	23	5.1	23	83	7	146	37	15	14	31	1.89
20287846--20287991	60	2.4	59	86	4	193	35	21	19	23	1.96
20287970--20288015	21	2.2	21	92	0	74	32	17	26	23	1.97
20288380--20288489	43	2.6	43	80	0	112	21	32	17	28	1.96
20290318--20290357	19	2.1	19	90	0	62	30	27	22	20	1.98
20294695--20294774	37	2.2	37	97	0	151	38	18	11	31	1.86
20295331--20295362	15	2.1	15	94	0	55	18	25	28	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20295347--20295525	31	5.9	31	72	13	106	25	21	18	34	1.96
20295471--20295550	31	2.6	31	89	0	115	23	20	17	38	1.93
20297212--20297282	29	2.4	29	83	0	97	33	11	21	33	1.89
20299902--20300026	38	3.4	38	88	3	175	28	8	36	28	1.85
20302285--20302460	29	6.3	29	75	9	132	34	15	18	31	1.92
20302509--20302588	31	2.6	31	95	0	142	15	6	36	42	1.72
20305545--20305697	69	2.3	67	82	6	175	27	14	26	31	1.95
20309763--20309800	19	2.0	19	89	0	58	31	0	26	42	1.56
20317048--20317111	29	2.2	28	83	8	76	31	28	10	29	1.91
20321783--20321880	30	3.3	30	75	11	80	32	25	14	27	1.94
20322298--20322519	27	8.2	27	70	13	136	35	15	12	36	1.86
20322325--20322518	53	3.6	51	73	13	149	35	14	13	36	1.86
20322299--20322511	107	2.0	110	84	6	283	36	16	13	33	1.87
20322430--20322606	97	1.8	96	81	10	218	33	14	12	38	1.85
20327520--20327560	15	2.7	15	92	0	64	51	14	4	29	1.63
20336370--20336541	43	4.0	43	89	2	240	25	17	34	22	1.95
20343747--20343875	43	3.0	42	85	3	170	24	18	33	23	1.97
20346186--20346295	43	2.6	43	82	2	132	23	35	16	24	1.95
20362293--20362367	37	2.0	37	97	0	141	41	12	18	28	1.86
20362859--20363017	54	2.9	54	86	0	210	20	13	39	25	1.90
20370398--20370438	21	1.9	22	90	5	66	17	24	7	51	1.70
20375315--20375360	2	23.0	2	90	0	74	47	0	4	47	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20375415--20375456	2	21.0	2	95	0	75	47	0	2	50	1.14
20375497--20375622	42	3.0	42	86	0	171	23	33	22	21	1.97
20384298--20384332	11	3.3	11	88	8	54	2	22	8	65	1.34
20386432--20386686	52	4.9	52	87	1	345	30	28	14	26	1.95
20386432--20386693	103	2.5	102	88	1	362	30	27	14	27	1.95
20387477--20387529	19	2.7	19	82	2	61	69	1	26	1	1.09
20388451--20388510	25	2.4	25	82	0	75	30	31	11	26	1.92
20398364--20398506	48	2.9	49	88	6	211	27	17	33	21	1.96
20408990--20409067	27	2.9	27	86	1	104	10	25	11	52	1.69
20409830--20409876	2	23.5	2	100	0	94	48	0	0	51	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106