genome.fa.s2.2.7.7.80.10.50.1000.93.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  93  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35533907--35534067	31	5.2	31	70	16	111	32	9	22	34	1.87
35533907--35534112	62	3.3	63	85	8	271	31	10	21	35	1.88
35535277--35535316	16	2.4	17	83	4	55	62	0	27	10	1.27
35535272--35535316	16	2.8	16	82	3	54	62	0	28	8	1.25
35537030--35537055	13	2.0	13	100	0	52	46	7	23	23	1.78
35539519--35539574	30	1.9	29	82	7	69	42	17	10	28	1.83
35539709--35539775	20	3.3	21	75	10	59	65	8	2	22	1.34
35539748--35539793	6	7.5	6	87	2	65	65	17	0	17	1.28
35546345--35546387	6	7.2	6	83	0	50	16	27	4	51	1.64
35546375--35546439	30	2.2	30	85	0	85	12	32	6	49	1.65
35559524--35559643	2	61.0	2	73	15	90	45	2	3	47	1.32
35566832--35566877	20	2.2	20	84	7	56	52	0	0	47	1.00
35567241--35567287	23	2.0	24	84	16	62	78	6	6	8	1.08
35567323--35567351	11	2.5	12	94	5	51	86	0	13	0	0.58
35574546--35574615	16	4.2	16	80	7	59	82	1	10	5	0.88
35574553--35574619	7	9.4	7	78	18	50	82	0	11	5	0.84
35574552--35574604	11	4.4	11	81	15	52	84	0	9	5	0.76
35576731--35577068	31	10.9	31	64	16	155	32	14	19	33	1.92
35576722--35577583	62	13.9	61	79	7	720	33	14	19	32	1.92
35576723--35577583	250	3.5	248	80	7	892	33	14	19	32	1.92
35577489--35577590	30	3.4	31	68	11	86	32	13	17	36	1.89
35582348--35582415	34	2.0	34	91	5	111	26	10	11	51	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35584388--35584453	31	2.1	31	82	0	78	46	12	22	18	1.81
35584871--35584955	2	42.5	2	75	13	68	45	9	0	43	1.36
35586031--35586056	2	13.0	2	100	0	52	50	0	0	50	1.00
35588466--35588547	41	2.0	41	100	0	164	31	21	14	31	1.94
35590942--35591189	80	3.1	80	85	5	333	31	8	25	35	1.86
35596829--35596869	21	2.0	21	85	0	55	31	14	24	29	1.95
35596718--35596999	125	2.3	125	83	1	334	35	11	18	34	1.87
35596942--35597005	21	2.9	21	74	6	56	34	9	23	32	1.87
35617872--35617907	18	2.0	18	88	0	54	30	2	2	63	1.22
35622088--35622193	38	2.7	38	81	8	117	22	37	16	22	1.94
35622310--35622335	2	13.0	2	100	0	52	50	0	0	50	1.00
35648692--35648774	40	2.1	40	86	6	116	38	22	20	18	1.93
35653784--35653914	65	2.0	65	96	0	244	34	25	16	24	1.95
35658125--35658152	11	2.5	11	100	0	56	32	0	14	53	1.41
35667839--35667881	6	7.0	6	78	5	50	0	25	0	74	0.82
35675838--35675895	23	2.4	24	83	11	66	72	0	3	24	1.00
35676907--35676952	2	23.0	2	91	8	76	50	47	0	2	1.13
35676952--35676999	2	23.5	2	95	4	87	50	0	2	47	1.12
35677001--35677037	2	18.5	2	100	0	74	51	48	0	0	1.00
35677037--35677103	2	33.5	2	88	5	100	46	1	2	49	1.26
35681904--35681962	29	2.1	28	93	3	100	33	13	6	45	1.70
35681904--35681974	28	2.5	29	88	2	90	35	12	8	43	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35682026--35682084	27	2.2	27	82	8	77	35	10	10	44	1.72
35682264--35682320	26	2.2	26	90	3	89	36	8	8	45	1.66
35692101--35692152	17	3.0	17	75	13	52	21	11	0	67	1.22
35695472--35695516	12	3.7	12	80	13	56	77	0	0	22	0.76
35695462--35695516	22	2.3	25	84	9	71	76	0	0	23	0.79
35695973--35696013	20	2.0	20	90	4	64	60	0	39	0	0.96
35695986--35696026	17	2.5	16	88	4	55	68	0	31	0	0.90
35696046--35696099	9	6.2	9	81	16	60	70	0	29	0	0.88
35696046--35696116	16	4.1	18	80	10	78	74	0	25	0	0.82
35696051--35696115	34	1.9	34	87	6	96	75	0	24	0	0.81
35696486--35696521	11	3.4	11	84	7	56	80	0	0	19	0.71
35696490--35696533	21	2.1	21	87	8	63	77	0	4	18	0.94
35709400--35709424	2	12.5	2	100	0	50	52	48	0	0	1.00
35709424--35709499	2	40.0	2	78	15	72	44	1	1	51	1.18
35718801--35718841	20	2.2	19	86	8	57	43	19	9	26	1.82
35722347--35722383	19	1.9	19	100	0	74	27	0	29	43	1.55
35723646--35723670	13	1.9	13	100	0	50	52	0	0	48	1.00
35740326--35740662	110	3.1	110	96	0	611	31	22	35	9	1.87
35740705--35740736	12	2.7	12	100	0	64	56	0	43	0	0.99
35741620--35741661	18	2.3	19	83	4	50	76	2	2	19	1.01
35743867--35743934	30	2.3	30	81	0	91	33	13	4	48	1.62
35745377--35745440	33	1.9	33	100	0	128	43	9	3	43	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35745611--35745651	2	21.0	2	95	5	75	48	0	0	51	1.00
35746623--35746647	2	12.5	2	100	0	50	52	0	0	48	1.00
35747967--35748037	26	2.7	26	86	0	97	42	12	11	33	1.79
35748117--35748183	27	2.5	27	87	2	91	44	16	7	31	1.75
35748119--35748172	26	2.2	26	83	6	67	50	14	7	27	1.70
35747967--35748258	153	1.9	150	79	6	320	42	11	10	34	1.77
35761627--35761664	16	2.4	16	86	8	51	73	5	0	21	1.02
35762278--35762303	4	6.5	4	100	0	52	50	23	0	26	1.50
35763032--35763076	20	2.2	20	84	7	56	73	2	24	0	0.95
35764248--35764404	49	3.2	49	91	0	251	22	35	15	26	1.95
35766841--35766936	42	2.3	42	83	0	120	20	26	23	29	1.99
35779981--35780069	30	2.9	30	69	9	81	30	12	21	35	1.90
35779852--35780069	62	3.5	61	83	3	267	34	12	18	34	1.89
35779971--35780064	31	3.1	31	71	9	102	29	13	20	36	1.91
35779852--35780103	62	4.1	61	79	6	215	34	13	17	34	1.90
35779914--35780201	61	4.7	59	76	8	204	33	13	20	32	1.92
35780586--35780630	19	2.4	19	85	7	56	73	8	0	17	1.08
35785449--35785486	17	2.1	19	85	9	53	36	39	13	10	1.79
35789191--35789223	17	1.9	17	93	0	57	78	3	9	9	1.05
35791649--35791674	9	2.9	9	100	0	52	34	0	11	53	1.37
35793810--35793892	7	11.3	7	72	16	62	3	15	1	79	0.93
35793813--35793851	15	2.7	15	88	4	53	2	12	2	82	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35793810--35793893	21	4.1	20	78	7	89	3	15	1	79	0.92
35793807--35793907	34	2.9	34	77	18	84	4	15	0	78	0.98
35793831--35793907	34	2.3	34	82	11	95	5	16	1	76	1.03
35793854--35793907	17	3.2	17	75	17	58	7	12	0	79	0.92
35793866--35793906	22	1.9	22	85	5	57	4	14	0	80	0.87
35794481--35794563	24	3.7	23	67	22	68	9	15	0	74	1.06
35794461--35794527	25	2.7	26	72	9	68	7	17	0	74	1.04
35794502--35794550	18	2.8	17	84	9	71	6	16	0	77	0.96
35801806--35801917	57	1.9	58	85	5	156	33	8	20	37	1.82
35803211--35803248	18	2.1	19	85	5	51	60	5	0	34	1.19
35804057--35804088	9	3.6	9	91	0	55	0	25	0	75	0.81
35812682--35812723	19	2.0	21	82	17	52	7	14	16	61	1.53
35822806--35822830	13	1.9	13	100	0	50	52	0	0	48	1.00
35825155--35825187	17	1.9	17	88	11	50	42	3	6	48	1.43
35846278--35846307	15	1.9	16	93	6	53	30	0	0	70	0.88
35846274--35846326	18	2.6	20	77	19	56	35	0	0	64	0.94
35846661--35846701	16	2.9	15	83	16	52	26	0	4	68	1.10
35848223--35848261	18	2.2	18	100	0	78	20	28	17	33	1.96
35849634--35849681	22	2.2	22	88	0	69	35	0	2	62	1.07
35849931--35850049	62	1.9	61	93	1	202	26	6	20	47	1.74
35853897--35853924	2	14.0	2	100	0	56	50	0	0	50	1.00
35853926--35853966	2	20.5	2	100	0	82	0	0	48	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35861106--35861160	10	5.0	11	80	17	53	60	1	38	0	1.08
35861207--35861242	14	2.6	14	90	0	54	63	0	36	0	0.94
35861654--35861686	2	16.5	2	100	0	66	51	0	0	48	1.00
35862477--35862537	14	4.1	15	76	18	56	68	0	31	0	0.89
35862478--35862535	18	3.2	18	80	7	73	72	0	27	0	0.85
35862482--35862535	17	3.1	17	84	10	65	72	0	27	0	0.85
35864425--35864634	31	6.8	31	75	8	178	33	18	17	30	1.94
35864426--35864646	61	3.6	61	84	1	271	33	18	18	30	1.95
35864703--35864891	22	8.6	22	76	2	157	28	30	13	28	1.94
35864703--35864913	44	4.8	44	77	4	167	27	30	14	27	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106