genome.fa.s2.2.7.7.80.10.50.1000.34.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  34  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13088215--13088389	43	4.1	42	77	8	147	22	34	16	26	1.95
13099845--13099869	13	1.9	13	100	0	50	48	8	0	44	1.32
13103048--13103084	19	1.9	19	94	0	65	40	8	37	13	1.74
13104477--13104524	15	3.1	16	74	17	55	45	0	10	43	1.38
13104255--13104949	344	2.0	341	86	4	961	44	8	7	39	1.63
13105348--13105430	32	2.6	32	80	0	94	48	15	4	31	1.66
13114826--13114863	19	2.0	19	94	0	67	28	0	28	42	1.56
13115681--13115709	10	2.9	10	100	0	58	41	0	20	37	1.53
13127619--13127867	35	7.1	35	83	3	261	36	6	12	44	1.68
13127612--13127888	142	2.0	139	85	3	376	37	6	12	43	1.69
13127660--13127886	107	2.1	106	81	4	242	37	7	12	42	1.70
13129625--13129805	91	2.0	91	97	0	344	27	16	23	32	1.96
13131745--13131789	23	2.0	23	90	0	72	64	11	6	17	1.46
13131980--13132011	16	1.9	17	93	6	57	43	12	3	40	1.58
13134282--13134348	35	1.9	35	81	0	80	22	7	7	62	1.46
13136050--13136113	27	2.2	28	86	8	85	59	4	4	31	1.38
13138837--13139521	251	2.7	251	86	2	941	48	7	9	33	1.64
13146095--13146132	19	2.0	20	89	5	60	42	5	18	34	1.73
13149410--13149439	1	30.0	1	93	0	51	96	0	3	0	0.21
13149410--13149443	8	4.4	8	92	3	52	94	0	5	0	0.32
13149980--13150023	21	2.1	21	83	8	54	45	11	36	6	1.67
13151291--13151350	4	15.0	4	89	0	75	41	0	8	50	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13151291--13151350	6	10.0	6	88	0	75	41	0	8	50	1.33
13153212--13153236	10	2.5	10	100	0	50	0	8	0	92	0.40
13153267--13153339	37	2.0	37	97	2	130	46	5	2	43	1.41
13160697--13160747	23	2.2	24	89	3	77	49	37	5	7	1.56
13162788--13163007	110	2.0	110	96	0	404	31	3	12	51	1.57
13167658--13167685	14	2.0	14	100	0	56	14	0	0	85	0.59
13169874--13169914	22	1.9	22	85	5	57	48	4	9	36	1.58
13173698--13173722	3	8.3	3	100	0	50	32	32	36	0	1.58
13177001--13177142	66	2.2	66	85	5	198	35	14	16	32	1.90
13177285--13177360	29	2.7	29	83	4	93	43	13	7	35	1.73
13199034--13199102	2	36.5	2	74	11	56	47	2	1	47	1.25
13199278--13199318	17	2.5	17	84	11	50	43	4	0	51	1.23
13199550--13199583	15	2.2	16	89	5	52	52	2	5	38	1.41
13200028--13200063	16	2.2	17	90	5	56	16	0	8	75	1.04
13214693--13214735	16	2.5	18	77	11	54	51	2	0	46	1.13
13215154--13215418	70	3.7	71	85	5	347	52	5	9	32	1.55
13215713--13215766	28	1.9	28	96	0	99	62	5	1	29	1.28
13231253--13231328	23	3.3	23	80	14	68	71	0	2	26	1.00
13235310--13235337	14	2.0	14	100	0	56	35	21	0	42	1.53
13235678--13235718	17	2.4	17	88	11	66	24	2	12	60	1.43
13241321--13241377	26	2.2	27	78	12	66	54	0	5	40	1.23
13245774--13245872	52	1.9	51	83	6	128	29	22	12	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13247856--13248011	42	3.7	43	86	2	226	20	33	24	21	1.97
13247843--13248011	85	2.0	85	89	2	259	20	33	23	21	1.97
13248056--13248129	2	37.5	2	72	2	60	41	5	6	45	1.53
13248056--13248118	18	3.6	18	82	4	85	42	6	6	44	1.55
13252339--13252487	79	1.9	79	83	5	194	43	12	8	35	1.72
13252436--13252549	57	2.0	56	89	5	176	44	11	7	35	1.70
13253555--13253588	18	1.9	17	88	5	50	38	0	0	61	0.96
13253672--13253715	22	2.0	22	90	0	70	52	15	6	25	1.68
13260521--13260600	32	2.5	32	79	0	97	47	16	5	31	1.68
13264559--13264625	34	1.9	35	88	8	102	37	8	5	47	1.59
13269200--13269278	39	2.0	40	85	2	106	32	21	22	22	1.98
13274154--13274230	39	2.0	40	89	7	122	35	24	19	20	1.96
13279112--13279160	2	24.5	2	100	0	98	51	0	48	0	1.00
13279263--13279295	16	2.0	17	88	5	50	27	0	6	66	1.15
13280200--13280248	24	2.0	24	100	0	98	28	16	12	42	1.84
13280423--13280608	72	2.6	73	81	9	211	38	11	12	37	1.80
13287317--13287400	39	2.2	39	88	0	123	34	21	21	22	1.97
13287740--13287847	43	2.5	43	82	5	121	19	35	20	25	1.96
13289193--13289230	19	2.0	19	100	0	76	42	31	0	26	1.56
13293099--13293218	49	2.4	49	86	2	152	25	30	15	29	1.96
13293544--13293627	43	2.0	42	90	6	136	42	25	2	28	1.67
13296858--13296895	18	2.1	18	85	9	51	84	2	13	0	0.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13296860--13296902	22	2.0	22	90	0	68	81	2	16	0	0.79
13296858--13296903	16	2.8	17	77	12	51	82	2	15	0	0.76
13297235--13297278	10	4.3	10	82	5	52	22	6	4	65	1.35
13297225--13297278	21	2.7	20	83	11	65	25	5	5	62	1.39
13303693--13303747	20	2.8	21	83	8	62	70	0	29	0	0.87
13310421--13310459	13	3.0	13	92	0	60	35	20	28	15	1.93
13316458--13316502	22	2.1	21	83	4	54	28	28	15	26	1.96
13317816--13317855	21	1.9	21	85	10	55	37	10	17	35	1.83
13317811--13318004	50	3.7	51	76	12	180	38	8	14	38	1.77
13317974--13318014	22	1.9	22	90	5	66	39	7	17	36	1.77
13317972--13318019	21	2.3	20	79	10	60	35	6	18	39	1.76
13323361--13323566	107	1.9	107	97	0	394	33	13	16	36	1.87
13324696--13324786	35	2.6	35	82	3	103	25	32	9	31	1.89
13325480--13325548	36	1.9	36	88	5	104	0	34	0	65	0.93
13325480--13325552	20	3.8	20	76	18	84	0	34	0	65	0.93
13325494--13325538	16	2.8	16	83	6	56	0	35	0	64	0.94
13328474--13328516	17	2.6	17	88	3	61	9	27	0	62	1.25
13332599--13332658	28	2.1	28	84	6	75	41	20	8	30	1.81
13340843--13340882	21	1.9	21	84	0	53	75	15	2	7	1.14
13342186--13342220	2	17.5	2	93	0	61	48	0	2	48	1.16
13345359--13346007	323	2.0	322	86	2	892	36	28	12	21	1.90
13347807--13347886	40	2.0	40	95	0	142	36	18	8	36	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13354695--13354797	29	3.6	29	82	8	140	35	11	11	40	1.78
13361504--13361552	15	2.9	18	68	25	52	53	4	2	40	1.32
13365591--13365663	38	1.9	38	88	0	110	32	13	28	24	1.94
13368095--13368161	31	2.2	31	86	2	100	37	11	20	29	1.89
13368495--13368534	20	2.0	20	90	0	62	42	17	17	22	1.89
13372565--13372604	18	2.2	18	86	8	55	20	25	0	55	1.44
13375520--13375565	20	2.3	20	96	0	83	45	21	4	28	1.71
13382502--13382609	43	2.5	43	80	5	128	26	13	35	24	1.93
13386039--13386063	13	1.9	13	100	0	50	52	0	0	48	1.00
13390603--13390643	18	2.2	20	86	8	59	34	17	4	43	1.70
13398475--13398524	20	2.6	19	84	9	66	30	6	0	64	1.18
13399213--13399245	16	1.9	17	88	11	50	81	0	3	15	0.80
13400227--13400572	47	7.2	47	75	9	194	39	15	13	31	1.86
13413649--13413691	20	2.2	20	83	8	52	23	4	6	65	1.37
13414742--13414768	14	1.9	14	100	0	54	29	0	11	59	1.32
13420432--13420463	3	10.7	3	93	0	55	31	0	3	65	1.08
13422916--13422940	3	8.3	3	100	0	50	68	0	0	32	0.90
13425322--13425348	14	1.9	14	100	0	54	29	0	11	59	1.32
13426963--13426992	2	15.0	2	100	0	60	50	0	0	50	1.00
13435777--13435863	37	2.4	37	90	3	122	26	9	21	42	1.83
13435818--13435889	27	2.7	27	88	0	108	29	8	20	41	1.81
13435794--13435878	37	2.3	37	87	0	125	28	8	22	41	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13436142--13436932	408	1.9	411	89	3	1247	28	14	14	42	1.84
13440013--13440048	11	3.4	11	88	7	56	66	11	22	0	1.22
13440061--13440105	21	2.1	21	84	8	56	55	6	20	17	1.64
13442922--13443044	43	2.9	43	86	2	158	22	35	16	25	1.94
13447960--13448033	37	2.0	37	97	0	139	35	17	13	33	1.89
13449403--13449441	2	19.5	2	100	0	78	48	0	0	51	1.00
13451080--13451186	40	2.7	39	84	8	146	22	41	16	19	1.90
13454853--13455013	63	2.6	63	86	0	232	24	31	19	24	1.98
13458237--13458265	13	2.1	14	93	6	51	27	17	6	48	1.72
13460168--13460334	42	4.0	42	85	3	228	25	23	29	22	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106