genome.fa.s2.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  103  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39404937--39404980	17	2.6	17	82	7	54	36	0	4	59	1.18
39446887--39447139	108	2.3	108	83	5	332	20	32	12	34	1.90
39447059--39447167	30	3.6	30	93	2	159	16	37	11	34	1.84
39447346--39447389	22	2.0	22	100	0	88	50	18	13	18	1.79
39452676--39452725	9	5.6	9	79	15	59	0	46	0	54	1.00
39452676--39452728	19	2.9	19	81	13	67	0	45	0	54	0.99
39474630--39474799	50	3.5	50	92	4	292	44	3	2	49	1.32
39483357--39483397	2	20.5	2	100	0	82	48	0	51	0	1.00
39484001--39484525	283	1.9	282	85	5	747	41	11	12	34	1.79
39484001--39484812	286	2.9	284	80	6	756	41	11	12	33	1.79
39484849--39485304	235	1.9	234	81	4	535	45	10	9	33	1.72
39487810--39488135	135	2.4	134	84	4	391	44	13	13	28	1.82
39488092--39488318	46	5.0	46	85	5	293	46	8	17	27	1.77
39488113--39488330	87	2.4	90	84	3	280	46	8	16	27	1.76
39489627--39491393	604	3.0	589	83	7	2020	28	20	21	30	1.98
39493859--39493884	13	2.0	13	100	0	52	38	0	0	61	0.96
39495516--39495569	24	2.2	24	96	0	99	38	7	29	24	1.82
39502267--39502937	335	2.0	335	99	0	1333	32	19	19	28	1.96
39511227--39511255	2	14.5	2	100	0	58	0	48	0	51	1.00
39514047--39514126	29	2.8	29	75	17	76	52	7	21	18	1.70
39514619--39514693	15	5.0	15	81	4	89	36	17	14	32	1.90
39514750--39514881	41	3.3	41	75	14	157	31	6	8	53	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39514838--39514968	65	2.0	65	95	0	235	35	6	6	51	1.54
39525556--39525805	126	2.0	124	98	0	473	34	22	15	26	1.94
39527907--39527931	13	1.9	13	100	0	50	48	0	32	20	1.50
39528157--39528236	29	2.8	28	86	3	106	47	7	26	18	1.75
39528157--39528236	14	5.6	14	68	11	54	47	7	26	18	1.75
39535362--39535433	2	36.0	2	91	5	119	51	0	0	47	1.00
39541863--39541908	12	3.8	12	88	0	56	0	19	41	39	1.52
39554825--39554854	2	15.0	2	100	0	60	50	0	0	50	1.00
39555278--39555308	3	10.0	3	93	6	53	64	0	0	35	0.94
39566012--39566041	2	15.0	2	92	0	51	50	3	46	0	1.18
39566980--39567019	2	21.0	2	85	10	57	45	2	0	52	1.14
39570207--39570261	28	2.0	28	81	0	65	43	0	0	56	0.99
39570317--39570354	18	2.2	17	90	4	58	52	0	0	47	1.00
39589008--39589032	2	12.5	2	100	0	50	52	0	0	48	1.00
39606054--39606085	2	16.0	2	100	0	64	50	0	0	50	1.00
39606494--39606518	3	8.3	3	100	0	50	64	0	0	36	0.94
39609672--39609702	10	3.2	10	90	9	55	61	0	0	38	0.96
39614413--39614446	2	17.5	2	93	6	61	0	50	0	50	1.00
39615741--39615779	12	3.2	12	85	3	51	53	0	43	0	1.00
39615300--39616216	452	2.0	448	97	2	1734	32	17	25	24	1.97
39616182--39616216	2	17.5	2	93	0	61	51	0	48	0	1.00
39621307--39621383	35	2.2	36	95	2	138	37	14	11	36	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39621579--39621623	13	3.3	13	81	9	54	48	0	8	42	1.34
39628965--39629002	14	2.7	15	84	12	53	31	0	68	0	0.90
39632030--39632281	127	2.0	125	97	0	468	46	13	11	27	1.78
39632337--39632379	2	23.0	2	86	13	65	53	0	0	46	1.00
39632521--39632558	16	2.4	16	91	4	60	28	7	7	55	1.57
39632549--39632607	25	2.4	25	91	5	95	47	0	5	47	1.24
39656549--39656576	11	2.5	11	100	0	56	42	10	7	39	1.67
39657443--39657488	15	3.1	15	71	22	51	63	4	4	28	1.33
39657939--39657968	2	15.0	2	92	0	51	46	0	3	50	1.18
39658801--39658840	19	2.0	21	85	9	57	62	0	0	37	0.95
39659610--39659638	5	6.0	5	92	8	51	0	79	0	20	0.74
39669330--39669376	2	23.5	2	95	0	85	48	2	0	48	1.13
39671200--39671233	2	17.5	2	87	6	52	47	2	0	50	1.16
39673058--39673190	42	3.2	41	88	4	176	39	35	12	12	1.81
39679974--39679998	4	6.2	4	100	0	50	28	48	24	0	1.52
39687817--39687861	24	1.9	24	86	4	65	51	0	4	44	1.21
39691891--39691948	27	2.2	26	81	9	73	56	1	1	39	1.19
39692384--39692484	53	1.9	53	95	0	184	38	30	4	25	1.77
39698203--39698258	28	2.0	28	100	0	112	39	10	17	32	1.84
39701062--39701232	61	2.8	61	93	0	299	30	13	19	36	1.90
39709052--39709078	2	13.5	2	100	0	54	51	0	0	48	1.00
39715695--39715729	18	1.9	18	88	0	52	57	0	2	40	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39724998--39725049	2	26.5	2	82	3	61	1	44	1	51	1.23
39736923--39736956	10	3.3	10	88	8	50	41	0	2	55	1.15
39743061--39743095	2	17.5	2	93	0	61	48	2	0	48	1.16
39745957--39745984	3	9.3	3	100	0	56	67	32	0	0	0.91
39746477--39746626	46	3.4	44	69	19	116	37	10	6	46	1.64
39746404--39746613	85	2.4	86	81	5	237	37	8	8	45	1.64
39746995--39747493	160	3.2	159	82	5	573	37	10	8	44	1.69
39747429--39747466	19	2.0	19	85	10	51	47	2	0	50	1.15
39746995--39747523	157	3.4	154	80	6	562	37	10	8	43	1.69
39751130--39751416	90	3.2	89	80	3	272	37	6	10	45	1.64
39761608--39761760	81	1.9	81	91	0	252	47	23	7	22	1.76
39763808--39763887	16	4.7	17	71	14	58	42	2	1	53	1.22
39764307--39764438	53	2.5	53	96	0	237	13	40	9	35	1.78
39767264--39767295	15	2.1	15	94	0	55	43	0	3	53	1.16
39767868--39767899	15	2.1	16	94	5	57	46	0	0	53	1.00
39768585--39768675	25	3.3	25	80	19	110	48	14	0	37	1.44
39768600--39768657	18	3.4	18	67	13	59	44	15	0	39	1.47
39768589--39768664	33	2.3	33	95	2	136	44	14	0	40	1.45
39768712--39768761	25	2.0	25	96	0	91	46	16	2	36	1.58
39768740--39768774	16	2.2	16	94	0	61	42	14	0	42	1.45
39770786--39770848	30	2.1	30	96	0	117	47	19	4	28	1.69
39770971--39771049	25	3.3	25	69	16	85	50	35	0	13	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39770977--39771050	21	3.3	21	66	23	60	50	36	0	13	1.42
39770973--39771068	47	2.0	47	100	0	192	48	36	0	14	1.44
39770985--39771061	23	3.3	23	69	16	77	51	32	0	15	1.44
39770996--39771074	25	3.3	25	67	22	78	46	37	0	15	1.46
39771163--39771224	31	2.0	31	100	0	124	22	38	9	29	1.86
39772368--39772402	16	2.2	16	100	0	70	34	0	17	48	1.47
39773673--39773730	30	2.0	29	83	6	73	41	20	13	24	1.89
39778515--39778577	17	3.5	18	75	16	60	44	0	0	55	0.99
39779011--39779060	26	1.9	26	84	8	66	24	2	2	72	1.06
39779007--39779060	20	2.6	22	77	19	62	25	1	1	70	1.07
39780406--39780548	65	2.2	65	96	1	268	25	13	33	27	1.93
39786396--39786540	48	3.0	48	97	1	274	30	24	6	39	1.80
39786448--39786527	27	3.2	27	61	31	68	28	26	6	38	1.80
39797789--39797862	29	2.6	27	79	12	78	37	2	1	58	1.21
39811578--39811642	26	2.4	27	82	7	71	20	23	26	30	1.98
39813781--39813812	4	7.8	4	96	3	55	21	0	0	78	0.76
39815185--39815223	14	2.8	14	84	0	51	71	0	23	5	1.05
39815371--39815400	15	2.1	14	93	6	51	0	3	23	73	0.98
39826137--39826168	16	2.0	16	93	0	55	0	59	0	40	0.97
39830359--39830503	76	1.9	76	88	2	220	41	16	11	30	1.84
39844372--39845010	215	3.0	212	83	5	762	32	20	17	29	1.95
39853088--39853112	11	2.3	11	100	0	50	92	0	8	0	0.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39856993--39857026	16	2.1	16	88	0	50	44	0	0	55	0.99
39856986--39857034	25	1.9	26	91	4	82	44	2	2	51	1.24
39878994--39879024	2	15.5	2	100	0	62	0	48	0	51	1.00
39880858--39880954	30	3.2	30	75	15	94	41	0	0	58	0.98
39880858--39880965	30	3.6	28	75	15	83	42	0	0	55	1.12
39884369--39884412	2	22.5	2	95	4	81	50	0	0	50	1.00
39898115--39898158	21	2.2	21	84	8	56	4	0	11	84	0.77
39898109--39898161	25	2.2	23	83	6	61	3	1	13	81	0.92
39899976--39900057	26	3.2	25	73	13	76	36	1	1	60	1.12
39900147--39900230	25	3.3	24	77	15	73	54	0	3	41	1.17

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106