genome.fa.s2.2.7.7.80.10.50.1000.40.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  40  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15247035--15247154	42	2.9	41	88	5	177	22	23	33	20	1.97
15257678--15257702	2	12.5	2	100	0	50	48	0	0	52	1.00
15264596--15265335	382	1.9	382	87	3	1071	35	17	20	27	1.95
15265011--15265522	257	2.0	257	85	2	697	35	16	19	27	1.94
15268266--15268435	73	2.4	70	74	10	164	40	18	18	23	1.92
15272029--15272066	19	2.0	19	100	0	76	26	0	31	42	1.56
15274231--15274275	25	1.9	23	82	13	56	44	8	2	44	1.47
15274963--15275068	36	2.9	36	81	0	140	50	17	13	17	1.77
15275593--15275617	2	12.5	2	100	0	50	48	0	0	52	1.00
15275496--15275743	128	1.9	127	99	0	487	30	17	11	40	1.85
15278814--15278877	28	2.3	28	86	5	85	45	23	14	17	1.84
15278833--15278914	28	3.0	27	81	8	103	41	18	17	23	1.90
15278914--15278989	28	2.7	28	87	0	98	40	21	14	23	1.90
15285559--15285652	30	3.2	29	77	7	91	56	2	2	39	1.23
15293444--15293482	18	2.2	18	100	0	78	20	10	23	46	1.81
15293737--15293774	20	1.9	20	94	0	67	23	0	5	71	1.07
15293831--15293869	18	2.2	18	90	0	60	30	7	17	43	1.77
15294391--15294449	27	2.2	28	79	14	70	45	0	20	33	1.51
15294367--15294443	26	3.3	22	67	22	57	46	0	18	35	1.49
15301670--15301733	28	2.2	29	86	2	85	43	18	9	28	1.81
15308199--15308285	9	9.7	9	71	14	54	51	18	16	13	1.76
15308206--15308285	18	4.4	18	76	9	83	52	17	16	13	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15309025--15309108	41	2.0	41	93	0	141	22	7	27	42	1.79
15313989--15314034	19	2.4	19	85	0	56	60	0	0	39	0.97
15314941--15315007	23	2.8	22	84	13	80	71	0	28	0	0.86
15314941--15315014	28	3.0	23	75	19	67	67	1	31	0	0.99
15314944--15315001	28	2.1	28	100	0	116	72	0	27	0	0.85
15316368--15316413	2	23.0	2	100	0	92	50	0	0	50	1.00
15319024--15319148	42	3.0	42	90	0	196	22	24	32	20	1.98
15320845--15320972	21	5.6	21	66	21	69	35	10	17	36	1.84
15322935--15322996	19	3.3	19	68	20	58	37	12	19	30	1.89
15330485--15330578	36	2.6	36	89	0	143	15	11	45	26	1.81
15334245--15334276	3	10.7	3	93	0	55	34	28	0	37	1.57
15334735--15334770	16	2.2	16	90	0	54	22	16	0	61	1.35
15335723--15335770	15	3.1	15	85	8	62	77	0	0	22	0.78
15335723--15335766	21	2.0	22	91	4	72	77	0	0	22	0.77
15335989--15336030	21	2.0	21	86	9	59	14	2	14	69	1.30
15342107--15342149	19	2.3	19	88	8	61	67	11	6	13	1.41
15353028--15353249	117	1.9	117	94	0	390	24	32	19	23	1.98
15353483--15353507	13	1.9	13	100	0	50	48	0	0	52	1.00
15365796--15366629	38	21.9	38	83	7	838	25	15	18	40	1.89
15365796--15366629	113	7.3	114	81	9	864	25	15	18	40	1.89
15366648--15366694	3	15.7	3	89	8	69	72	27	0	0	0.85
15366638--15366720	27	3.2	25	83	11	98	77	20	1	1	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15366643--15366701	30	1.9	31	96	3	111	72	25	1	0	0.93
15368037--15368101	30	2.2	29	83	2	85	40	0	23	36	1.55
15379206--15379235	15	2.0	15	93	0	51	63	13	0	23	1.29
15387682--15387807	42	3.0	42	89	0	198	22	22	34	20	1.96
15388305--15388341	19	1.9	19	94	0	65	29	24	21	24	1.99
15392904--15392964	27	2.3	27	79	0	68	63	9	1	24	1.34
15392929--15392973	21	2.1	22	83	4	56	64	8	2	24	1.34
15392924--15392980	26	2.1	27	84	9	73	63	10	1	24	1.36
15394958--15395022	30	2.1	31	94	2	114	50	6	12	30	1.64
15395048--15395085	19	2.0	19	94	0	67	44	0	2	52	1.14
15396677--15396701	11	2.3	11	100	0	50	0	8	0	92	0.40
15411893--15411930	20	1.9	20	88	0	58	28	15	13	42	1.85
15414803--15414861	26	2.3	26	79	5	66	66	3	28	1	1.18
15417032--15417068	16	2.4	16	90	4	58	32	0	13	54	1.40
15422749--15422807	26	2.3	26	79	5	66	66	3	28	1	1.18
15426714--15426916	102	2.0	102	90	1	318	26	14	23	34	1.94
15427694--15427732	18	2.2	18	95	0	69	20	10	15	53	1.70
15434805--15434981	42	4.2	42	84	1	201	22	31	18	27	1.97
15447481--15447517	2	18.5	2	94	0	65	51	2	0	45	1.15
15449589--15449618	2	15.0	2	100	0	60	50	0	0	50	1.00
15450488--15450530	21	2.0	21	81	0	50	62	9	2	25	1.37
15451588--15451742	54	2.9	54	91	1	240	23	45	12	18	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15451757--15451856	40	2.5	41	78	6	123	25	37	15	23	1.93
15451974--15452005	2	16.0	2	93	0	55	46	0	0	53	1.00
15458308--15458357	2	25.0	2	92	8	84	50	0	2	48	1.12
15458455--15458494	2	20.0	2	94	0	71	52	0	0	47	1.00
15458502--15458606	54	1.9	55	90	1	167	26	42	11	19	1.85
15458581--15458766	41	4.6	41	85	7	220	25	36	13	24	1.93
15460365--15460437	36	2.0	36	100	0	146	19	16	21	42	1.89
15461094--15461118	9	2.8	9	100	0	50	36	0	20	44	1.52
15470934--15470974	20	2.0	20	90	0	64	39	0	17	43	1.49
15470941--15470992	20	2.3	23	71	25	56	40	0	21	38	1.53
15472798--15472844	22	2.1	23	84	11	62	51	17	4	27	1.64
15480122--15480164	13	3.2	14	78	21	56	34	0	18	46	1.50
15482164--15482198	2	18.5	2	88	11	56	45	0	0	54	0.99
15482163--15482198	9	4.1	9	92	7	65	44	0	0	55	0.99
15482492--15482526	2	17.5	2	100	0	70	48	0	0	51	1.00
15483915--15483951	12	3.1	12	88	0	56	13	0	0	86	0.57
15494402--15494580	29	6.3	28	78	8	173	36	13	10	40	1.78
15494429--15494532	27	3.7	27	76	10	82	36	14	6	42	1.72
15494825--15495948	560	2.0	559	96	0	2086	33	16	12	36	1.87
15498011--15498208	99	2.0	98	95	1	351	34	16	17	30	1.92
15506720--15506766	20	2.3	21	81	3	60	53	0	6	40	1.27
15507713--15507737	13	1.9	13	100	0	50	48	8	0	44	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15516849--15516905	27	2.2	26	87	6	80	42	1	5	50	1.35
15516981--15517051	7	10.1	7	75	14	58	43	0	1	54	1.08
15516793--15517052	120	2.2	115	80	9	294	37	1	3	58	1.21
15517012--15517066	26	2.1	26	89	0	83	43	0	1	54	1.10
15516989--15517060	12	5.9	12	71	20	60	41	0	1	56	1.07
15517021--15517128	41	2.7	39	85	8	128	42	0	1	54	1.17
15519544--15519614	5	14.6	5	85	5	85	1	21	1	76	0.95
15521245--15521289	21	2.3	18	85	11	54	44	2	2	51	1.26
15521246--15521289	18	2.2	21	84	11	58	45	2	2	50	1.27
15528988--15529021	16	2.1	16	88	0	50	44	0	32	23	1.54
15529286--15529523	22	10.3	22	63	23	62	35	2	2	59	1.26
15529293--15529344	27	1.9	27	84	7	70	36	5	0	57	1.23
15529184--15529522	157	2.1	159	84	4	443	35	2	2	58	1.28
15529438--15529496	28	2.1	28	84	6	75	38	1	1	57	1.19
15529905--15529946	15	2.7	16	81	7	59	54	2	0	42	1.13
15529934--15529978	16	2.6	17	82	10	56	51	0	0	48	1.00
15529948--15529978	16	1.9	16	100	0	62	54	0	0	45	0.99
15529984--15530022	19	2.1	19	90	0	60	38	2	0	58	1.12
15532408--15532469	30	2.1	30	84	0	79	19	0	12	67	1.22
15532519--15532548	9	3.3	9	90	0	51	26	10	20	43	1.83
15533473--15533596	39	3.2	39	79	10	146	41	26	16	16	1.88
15548685--15550483	251	7.2	250	85	3	2250	33	10	7	49	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15560029--15560055	2	13.5	2	100	0	54	51	0	0	48	1.00
15560164--15560198	2	17.5	2	100	0	70	48	0	0	51	1.00
15565556--15565727	89	1.9	88	82	10	217	26	14	13	45	1.81
15568224--15568263	16	2.6	16	88	4	55	67	7	5	20	1.34
15568800--15568840	12	3.3	13	73	13	50	70	9	9	9	1.34
15573070--15573100	4	7.8	4	100	0	62	77	0	0	22	0.77
15574173--15574215	12	3.6	12	83	0	50	16	23	2	58	1.50
15575195--15575232	20	1.9	20	88	0	58	42	15	23	18	1.89
15575734--15575862	32	3.8	33	76	12	120	25	10	26	37	1.89
15575714--15575862	35	4.5	32	76	15	140	22	11	27	38	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106