genome.fa.s2.2.7.7.80.10.50.1000.42.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  42  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15952305--15952748	234	1.9	235	80	3	509	30	17	27	24	1.97
15952786--15952841	24	2.3	24	90	0	94	26	8	41	23	1.84
15953515--15953627	31	3.6	31	87	0	163	25	14	21	38	1.91
15955017--15955328	145	2.2	145	82	3	403	29	21	17	31	1.96
15957488--15957667	62	2.9	62	87	0	243	28	29	15	26	1.96
15957600--15957933	87	3.9	85	84	3	416	29	27	17	24	1.98
15958211--15958260	23	2.2	23	96	0	91	48	2	4	46	1.32
15961699--15961807	31	3.5	31	88	2	148	33	20	17	29	1.95
15961699--15961822	62	2.0	62	82	6	153	33	20	16	28	1.95
15962153--15962259	54	2.0	54	86	0	151	34	13	28	24	1.92
15968176--15968201	2	13.0	2	100	0	52	50	0	0	50	1.00
15990879--15990912	17	1.9	18	88	5	52	47	8	8	35	1.66
16002982--16003105	36	3.6	36	78	8	123	35	24	10	29	1.89
16003868--16003968	21	4.8	21	76	9	89	50	15	3	29	1.62
16010428--16010554	50	2.6	50	83	6	143	30	11	24	33	1.91
16014339--16015056	358	2.0	358	98	0	1373	37	11	12	38	1.80
16022159--16022261	23	4.5	23	83	0	125	27	19	31	22	1.98
16022242--16022323	31	2.6	31	77	7	78	29	14	21	34	1.93
16031895--16032096	31	6.5	31	81	2	201	37	18	19	24	1.94
16032288--16032430	31	4.6	31	68	10	94	26	14	28	30	1.95
16032447--16032523	31	2.5	31	89	0	118	27	18	31	23	1.97
16032558--16032616	31	1.9	31	82	6	75	23	11	38	25	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16032465--16032652	93	2.0	93	82	2	225	23	17	29	29	1.97
16032809--16032885	16	4.9	16	79	7	79	55	2	7	33	1.42
16032809--16032885	31	2.5	31	79	10	86	55	2	7	33	1.42
16032854--16032885	17	1.9	17	93	6	57	59	3	6	31	1.38
16034430--16034790	31	11.6	31	81	0	317	37	21	16	24	1.94
16034430--16034790	62	5.8	62	80	0	353	37	21	16	24	1.94
16035145--16035440	156	1.9	156	83	2	389	30	20	18	31	1.96
16035163--16035502	156	2.2	156	79	4	355	30	20	17	32	1.95
16037130--16037197	31	2.2	31	91	0	109	38	17	20	23	1.93
16037198--16037410	31	6.9	31	87	2	214	36	21	16	25	1.94
16037213--16037410	62	3.2	62	84	2	238	36	22	15	24	1.93
16037971--16038227	47	5.5	47	81	4	304	21	33	16	28	1.95
16037979--16038250	140	1.9	141	85	2	377	20	33	16	28	1.95
16043708--16043873	71	2.3	71	84	4	210	46	19	15	18	1.83
16044452--16044579	50	2.6	49	80	5	130	32	14	21	32	1.93
16047414--16047459	19	2.4	20	82	10	60	54	0	2	43	1.12
16047838--16047883	20	2.3	20	92	0	74	28	6	21	43	1.77
16058983--16059147	28	5.8	28	88	5	231	38	13	7	40	1.74
16058983--16059154	57	3.0	57	90	2	263	38	13	8	40	1.74
16064093--16064187	43	2.2	43	90	0	145	24	16	34	24	1.95
16067650--16067674	11	2.3	11	100	0	50	28	0	0	72	0.86
16070086--16070151	30	2.3	29	84	5	80	31	7	15	45	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16071305--16071329	13	1.9	13	100	0	50	52	0	0	48	1.00
16072234--16072284	20	2.7	19	84	6	59	37	1	1	58	1.20
16080019--16080046	8	3.5	8	100	0	56	42	21	25	10	1.85
16089563--16089662	32	2.9	35	77	8	125	35	5	16	44	1.69
16089779--16089826	25	2.0	23	84	8	60	31	4	12	52	1.58
16089969--16090041	32	2.2	33	80	2	85	49	10	9	30	1.70
16091455--16091504	24	2.0	25	85	11	68	50	2	2	46	1.24
16091348--16091882	190	2.9	188	77	12	486	51	2	2	43	1.31
16091869--16091924	27	2.1	27	83	6	69	57	0	0	42	0.99
16092446--16092486	22	1.9	21	90	5	64	58	4	0	36	1.20
16092943--16092982	16	2.5	16	84	12	55	80	0	0	20	0.72
16092950--16092982	15	2.3	15	94	5	59	78	0	0	21	0.75
16092947--16092984	14	2.8	13	85	14	51	78	0	0	21	0.74
16098806--16098854	25	2.0	25	95	0	89	28	18	12	40	1.86
16100047--16100071	12	2.1	12	100	0	50	60	8	8	24	1.52
16101980--16102160	73	2.5	73	79	5	179	22	19	19	38	1.93
16103063--16103108	12	3.9	12	78	13	51	19	34	0	45	1.51
16108675--16108758	42	2.0	42	97	0	159	19	20	16	44	1.87
16113157--16113378	116	2.0	111	94	4	390	40	8	25	26	1.84
16126962--16127039	38	2.1	38	100	0	156	51	12	5	30	1.62
16127885--16127937	18	2.9	17	77	20	54	52	1	0	45	1.11
16128477--16128573	45	2.1	45	84	1	122	38	2	8	51	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16130608--16130632	6	4.2	6	100	0	50	16	52	32	0	1.44
16132539--16132563	10	2.5	10	100	0	50	0	36	0	64	0.94
16145576--16145669	35	2.7	35	85	5	118	11	28	24	35	1.91
16147400--16147497	49	2.0	49	100	0	196	30	18	14	36	1.90
16148521--16148600	39	2.1	39	97	0	151	27	17	16	38	1.91
16152649--16152729	26	3.3	26	76	13	98	25	13	22	38	1.91
16157510--16157885	78	4.9	78	83	1	391	42	13	24	20	1.87
16160667--16161288	121	5.1	120	81	4	586	32	21	10	34	1.88
16160673--16161266	182	3.3	181	86	1	767	32	21	11	34	1.89
16160673--16161288	61	10.1	61	80	2	575	32	21	11	34	1.89
16163613--16163746	46	2.9	45	72	8	108	35	25	11	27	1.91
16167969--16168027	23	2.6	23	86	0	73	40	23	13	22	1.89
16169124--16169183	30	2.0	30	90	0	93	36	11	5	46	1.62
16169134--16169192	30	2.0	30	86	0	82	37	13	3	45	1.60
16175228--16175265	14	2.6	14	80	19	51	5	21	2	71	1.19
16184343--16184711	153	2.4	153	84	4	465	35	20	14	29	1.92
16184718--16184776	30	2.0	30	86	0	82	33	22	6	37	1.80
16187948--16187992	23	2.0	23	86	0	63	40	6	2	51	1.41
16189500--16189543	18	2.2	21	80	15	58	45	0	0	54	0.99
16189607--16189652	11	4.2	11	83	10	51	50	0	0	50	1.00
16189604--16189661	27	2.2	27	85	11	77	48	0	0	51	1.00
16201461--16201497	14	2.6	14	86	0	56	0	8	2	89	0.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16201539--16201566	2	14.0	2	100	0	56	50	0	50	0	1.00
16201928--16201998	37	1.9	37	82	5	90	33	1	1	63	1.12
16202403--16202463	25	2.4	25	73	13	63	40	0	0	59	0.98
16202403--16202465	26	2.5	25	74	5	65	39	0	0	60	0.97
16203622--16203664	19	2.2	20	91	4	70	30	0	4	65	1.13
16203632--16203686	27	2.0	29	85	7	78	25	3	3	67	1.23
16231184--16231216	16	2.0	17	88	5	50	63	0	9	27	1.24
16244110--16244402	37	7.7	38	80	5	326	25	15	18	41	1.89
16244118--16244410	151	1.9	151	85	2	401	24	15	18	41	1.88
16248246--16248285	2	20.0	2	100	0	80	50	0	0	50	1.00
16250871--16250903	2	16.5	2	100	0	66	51	0	0	48	1.00
16255071--16255110	14	2.5	17	73	23	50	25	15	40	20	1.90
16258720--16258841	62	2.0	62	93	0	208	48	8	23	19	1.76
16258928--16258981	28	1.9	28	85	7	74	31	22	12	33	1.92
16259688--16259763	21	3.6	21	82	8	75	50	18	3	27	1.65
16259686--16259770	21	4.1	20	80	11	73	47	16	4	31	1.67
16261203--16261262	14	4.4	14	74	21	56	70	0	26	3	1.03
16261535--16261633	34	2.9	34	90	0	153	35	13	18	33	1.89
16261607--16261657	23	2.2	23	92	0	84	33	5	23	37	1.79
16261573--16261738	57	2.9	57	85	0	235	34	9	21	34	1.86
16261664--16261713	23	2.2	23	85	0	64	34	6	24	36	1.80
16261862--16261939	22	3.7	22	86	5	99	32	14	43	10	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16261863--16261927	22	3.0	22	93	0	103	33	12	41	12	1.80
16262287--16262328	18	2.3	19	80	12	52	28	21	21	28	1.99
16266320--16266354	16	2.3	15	90	5	52	80	0	2	17	0.84
16266979--16267159	34	5.6	34	77	13	177	33	12	20	33	1.91
16266979--16267164	68	2.9	67	83	10	223	33	12	20	33	1.90
16267090--16267139	23	2.2	23	85	0	64	34	6	24	36	1.80
16267065--16267175	57	2.0	57	91	5	181	32	11	22	33	1.90
16267288--16267365	22	3.7	22	86	5	108	32	15	43	8	1.78
16269199--16269267	36	1.9	36	85	5	95	27	17	24	30	1.97
16275382--16275423	20	2.2	19	84	16	52	30	2	26	40	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106