genome.fa.s2.2.7.7.80.10.50.1000.60.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  60  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22587802--22588710	344	2.6	342	82	4	1026	38	13	13	34	1.84
22589433--22593900	171	26.1	172	77	6	3519	34	13	13	38	1.85
22593782--22594026	134	1.8	134	87	1	366	36	17	13	33	1.88
22594039--22594337	161	1.9	160	79	6	345	33	15	14	36	1.89
22604725--22610970	171	36.6	169	74	8	4247	33	13	14	38	1.86
22606329--22606609	152	1.8	154	81	7	358	34	14	14	35	1.88
22606943--22606980	20	2.0	18	90	10	58	31	15	5	47	1.68
22607829--22608108	150	1.9	150	84	3	384	32	14	14	38	1.86
22611925--22611977	27	2.0	26	96	0	88	35	7	13	41	1.72
22617764--22620252	514	4.9	511	81	5	2163	33	13	14	38	1.86
22617764--22620448	171	15.8	168	75	9	1903	33	13	14	38	1.86
22621678--22621845	42	4.0	42	89	0	228	23	20	34	22	1.97
22621872--22621902	2	15.5	2	93	0	53	48	0	3	48	1.17
22623294--22624097	171	4.7	170	79	4	751	33	12	14	39	1.84
22623293--22624097	344	2.3	343	80	5	878	33	12	14	39	1.84
22625376--22625457	37	2.2	37	93	0	137	29	10	34	25	1.90
22626513--22635183	171	50.6	170	78	6	7101	33	13	14	38	1.85
22641750--22641911	43	3.8	43	83	4	202	21	33	18	26	1.96
22642735--22642762	4	7.0	4	100	0	56	0	25	0	75	0.81
22642951--22643100	34	4.3	35	78	12	141	32	20	5	42	1.75
22643463--22643488	2	13.0	2	100	0	52	50	0	0	50	1.00
22645418--22645476	23	2.4	24	83	11	75	28	44	5	22	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22645509--22645600	44	2.1	44	81	2	105	21	33	19	25	1.97
22648671--22648714	22	2.0	22	86	8	63	29	9	25	36	1.86
22648708--22648735	11	2.5	11	100	0	56	32	0	14	53	1.41
22659452--22659548	34	2.7	34	82	6	104	25	16	37	20	1.93
22663181--22663224	22	2.0	22	86	8	63	40	6	20	31	1.79
22663803--22663829	2	13.5	2	100	0	54	51	0	0	48	1.00
22663979--22664134	54	2.9	54	88	0	240	18	12	44	24	1.84
22667803--22667964	43	3.8	43	85	8	213	21	34	18	25	1.96
22668729--22672412	171	21.6	171	81	4	3709	32	14	13	38	1.86
22675212--22675983	171	4.5	170	87	1	990	31	13	13	40	1.85
22676014--22676942	171	5.4	167	80	7	963	32	15	12	38	1.86
22676014--22676942	342	2.7	340	81	4	1075	32	15	12	38	1.86
22684347--22685079	171	4.3	171	83	3	884	32	14	15	37	1.88
22686154--22689565	343	10.0	342	80	5	3439	32	15	13	38	1.87
22686154--22689571	171	20.1	171	79	6	3383	32	15	13	38	1.87
22686166--22689571	514	6.7	509	80	5	3399	32	15	13	38	1.87
22689980--22693620	171	21.3	171	79	7	3359	33	15	13	38	1.86
22689980--22693620	514	7.1	512	83	4	3945	33	15	13	38	1.86
22697196--22697677	170	2.8	170	82	3	578	32	14	12	40	1.84
22698052--22698256	102	2.0	102	100	0	410	32	17	15	34	1.92
22699230--22699432	42	4.8	42	87	2	264	24	20	31	23	1.98
22707255--22707385	36	3.4	36	72	20	120	25	39	13	21	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22709085--22709134	14	3.5	15	73	13	52	46	0	0	54	1.00
22713341--22713378	19	2.0	19	94	0	67	42	28	0	28	1.56
22717156--22717203	20	2.5	20	82	3	62	16	31	4	47	1.65
22718413--22718517	40	2.6	41	80	8	128	21	22	20	35	1.96
22732684--22732846	60	2.7	60	84	3	195	33	20	19	26	1.97
22742337--22742478	30	4.8	30	83	5	173	36	19	9	33	1.85
22743007--22743143	75	1.9	75	81	4	172	18	20	15	45	1.85
22744852--22745086	63	3.7	63	85	4	296	28	29	16	26	1.97
22745110--22745175	2	33.0	2	100	0	132	50	0	0	50	1.00
22755175--22755409	127	1.9	126	87	0	344	28	31	14	25	1.95
22755173--22755409	63	3.7	63	87	1	339	27	31	15	25	1.95
22775907--22775931	13	1.9	13	100	0	50	48	0	0	52	1.00
22794025--22794076	28	1.9	27	84	7	70	26	21	21	30	1.98
22794130--22794167	20	1.9	20	100	0	76	44	21	5	28	1.73
22803270--22803806	282	1.9	285	90	1	873	41	7	8	42	1.63
22810781--22810805	13	1.9	13	100	0	50	48	8	0	44	1.32
22814030--22814054	12	2.1	12	100	0	50	56	0	0	44	0.99
22815895--22815940	21	2.2	20	84	7	56	15	21	6	56	1.61
22815900--22815940	21	1.9	22	90	5	66	17	24	7	51	1.70
22825275--22825377	38	2.6	39	81	6	120	21	15	39	23	1.91
22829318--22829361	22	2.0	22	90	0	70	38	20	11	29	1.87
22831590--22831635	21	2.2	20	84	7	56	15	21	6	56	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22831595--22831635	21	1.9	22	90	5	66	17	24	7	51	1.70
22835379--22835420	20	2.1	20	90	0	66	45	4	30	19	1.71
22844388--22844589	108	1.9	107	83	1	260	33	7	15	42	1.76
22844340--22844609	35	7.7	35	78	4	242	35	7	15	42	1.74
22845691--22846057	178	2.0	181	84	3	483	37	12	16	34	1.86
22849806--22849931	35	3.6	35	89	1	164	29	11	26	32	1.91
22850098--22850149	5	9.8	5	85	6	59	71	0	28	0	0.87
22868247--22868293	24	1.9	25	83	12	62	27	12	25	34	1.92
22873871--22873908	19	2.0	19	94	0	67	42	28	0	28	1.56
22884456--22884591	67	2.0	67	86	0	191	25	13	24	36	1.92
22887280--22887440	63	2.6	63	77	7	191	27	16	29	26	1.97
22894473--22894728	129	2.0	128	94	3	444	31	10	24	33	1.89
22903959--22904004	20	2.3	20	96	0	83	28	4	21	45	1.71
22912539--22912661	42	2.9	42	92	0	210	21	21	33	22	1.97
22912896--22912957	26	2.4	26	91	0	97	25	3	38	32	1.72
22931362--22931386	12	2.1	12	100	0	50	52	0	8	40	1.31
22940252--22940458	54	3.8	54	92	0	342	19	13	40	26	1.89
22942367--22942458	30	3.2	29	64	30	72	21	45	11	20	1.83
22942365--22942571	54	3.8	54	87	1	288	23	42	13	21	1.88
22942723--22942764	2	21.0	2	100	0	84	50	0	0	50	1.00
22942785--22942817	2	16.5	2	100	0	66	48	0	0	51	1.00
22945643--22945761	60	2.0	60	86	0	166	23	17	34	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22951689--22951790	32	3.1	32	75	18	118	33	27	14	24	1.94
22951654--22951829	67	2.6	67	85	3	205	35	25	13	26	1.92
22952783--22952816	17	2.0	17	94	0	59	8	35	23	32	1.86
22956867--22956941	27	2.8	27	91	0	114	28	20	18	33	1.96
22956892--22956952	27	2.2	27	85	2	77	31	21	16	31	1.95
22964084--22964149	27	2.4	27	97	0	123	7	24	15	53	1.68
22964137--22964192	4	12.5	4	92	7	58	0	21	1	76	0.87
22964136--22964189	15	3.9	14	86	13	76	0	20	1	77	0.86
22964136--22964189	5	11.6	5	88	11	64	0	20	1	77	0.86
22964136--22964192	8	6.2	9	88	11	73	0	21	1	77	0.86
22964348--22964428	34	2.3	35	87	2	119	30	29	12	27	1.93
22968834--22968879	21	2.2	20	84	7	56	15	21	6	56	1.61
22968839--22968879	21	1.9	22	90	5	66	17	24	7	51	1.70
22970380--22970412	2	16.5	2	100	0	66	48	0	0	51	1.00
22970436--22970565	42	3.1	42	83	3	109	22	33	17	26	1.96
22970466--22970565	42	2.4	42	89	0	146	21	34	21	24	1.97
22978632--22978738	32	3.2	32	78	12	135	34	27	14	24	1.93
22978610--22978737	67	1.9	67	91	3	213	32	25	14	27	1.95
22979756--22979804	21	2.4	19	84	15	71	16	22	6	55	1.63
22979760--22979803	21	2.0	21	95	4	79	18	25	6	50	1.71
22983080--22983256	49	3.6	49	84	0	210	37	27	9	25	1.86
22987662--22987915	35	7.3	35	81	3	235	42	12	6	38	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22987662--22987890	107	2.2	105	85	4	300	42	12	7	37	1.70
22996659--22996695	2	18.0	2	88	5	56	51	2	0	45	1.15
22996660--22996692	17	1.9	17	93	0	57	51	3	0	45	1.16
22996764--22996830	21	3.2	21	62	8	55	26	32	19	20	1.97
22996758--22996847	42	2.1	42	91	0	153	24	31	23	21	1.98
22997557--22997812	127	2.0	127	93	4	446	25	24	12	37	1.91
22997940--22998012	33	2.2	33	95	2	128	21	26	6	45	1.77
23010907--23011041	36	3.8	35	81	2	162	44	12	6	36	1.69
23017460--23017574	61	1.9	61	88	0	176	29	33	14	22	1.94
23018050--23018118	35	1.9	36	91	2	113	27	10	26	36	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106