genome.fa.s2.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  15  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7022390--7022484	21	4.5	21	76	2	91	36	25	15	22	1.93
7022591--7022719	60	2.2	59	81	5	143	43	20	8	27	1.81
7023123--7023238	52	2.2	52	96	1	214	35	13	3	47	1.60
7023564--7023597	1	34.0	1	93	0	59	2	0	0	97	0.19
7023564--7023603	12	3.1	13	92	7	64	7	0	0	92	0.38
7023570--7023610	19	2.2	19	86	0	55	12	0	0	87	0.53
7026098--7026210	35	3.2	35	84	0	145	46	17	16	19	1.85
7026444--7026496	26	2.0	26	82	7	63	18	26	11	43	1.84
7026470--7026517	14	3.4	14	71	5	51	12	31	8	47	1.71
7027795--7028068	102	2.7	100	77	5	264	22	20	14	43	1.87
7031462--7031511	18	2.8	18	78	3	57	74	0	0	26	0.83
7031696--7031791	9	10.9	9	69	24	71	78	0	0	21	0.76
7031706--7031800	10	9.5	10	77	20	85	81	0	0	18	0.70
7031671--7031773	49	2.0	52	89	9	160	75	0	0	24	0.80
7031697--7031799	31	3.5	28	81	13	118	80	0	0	19	0.71
7031671--7031799	48	2.6	49	85	7	154	77	0	0	22	0.77
7031697--7031769	17	4.1	17	83	11	83	80	0	0	19	0.71
7032600--7032630	2	15.5	2	100	0	62	51	0	0	48	1.00
7033084--7033134	15	3.4	15	75	25	54	37	17	15	29	1.91
7033332--7033420	35	2.5	35	81	0	97	44	16	16	21	1.86
7033687--7033757	29	2.4	29	83	4	90	18	26	8	46	1.77
7040592--7040628	19	1.9	19	88	0	56	18	5	18	56	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7042263--7042313	26	2.0	26	96	0	93	31	23	21	23	1.98
7044987--7045028	19	2.2	19	95	0	75	19	28	26	26	1.98
7045574--7045645	36	2.0	36	100	0	144	27	13	19	38	1.90
7046850--7046880	2	15.5	2	100	0	62	51	0	0	48	1.00
7051333--7051511	88	2.0	88	94	0	313	35	18	26	18	1.94
7053876--7053933	27	2.1	28	90	3	91	65	8	5	20	1.40
7053876--7053934	28	2.1	28	87	6	84	66	8	5	20	1.38
7056511--7056544	13	2.5	13	95	4	59	52	5	2	38	1.41
7067784--7067848	33	2.0	32	93	3	112	32	21	20	24	1.97
7076428--7076452	12	2.1	12	100	0	50	32	16	12	40	1.84
7082830--7082907	30	2.5	31	81	12	97	43	2	2	51	1.29
7082904--7082959	18	3.1	18	76	19	71	78	0	7	14	0.95
7082904--7082944	19	2.2	19	86	8	57	80	0	7	12	0.90
7083867--7083903	17	2.3	17	86	9	51	48	0	0	51	1.00
7085436--7085466	16	1.9	16	100	0	62	51	0	0	48	1.00
7085751--7085816	19	3.3	18	77	22	62	54	0	0	45	0.99
7085744--7085829	15	6.3	14	69	26	51	53	1	0	45	1.07
7085785--7085844	27	2.1	29	90	6	97	50	1	0	48	1.11
7085883--7085943	15	4.3	15	74	19	58	45	1	3	49	1.28
7085888--7085940	27	2.0	27	88	7	81	39	1	3	54	1.29
7085943--7085980	16	2.2	17	86	13	51	65	7	0	26	1.19
7087165--7087357	45	4.3	45	82	0	215	32	18	15	34	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7087381--7087426	24	1.9	24	95	0	83	26	10	15	47	1.78
7087289--7087413	66	1.9	66	85	3	171	35	18	14	32	1.91
7088121--7088193	37	2.0	36	81	7	85	43	4	19	32	1.70
7089233--7089355	41	3.0	41	87	2	174	23	25	15	35	1.94
7091217--7091392	37	4.7	38	69	18	102	40	7	21	30	1.80
7091339--7091427	37	2.4	37	81	5	90	40	13	21	24	1.89
7093474--7093572	43	2.3	43	77	6	112	45	24	9	21	1.80
7095775--7095799	13	1.9	13	100	0	50	48	0	0	52	1.00
7096798--7096847	24	2.0	26	88	7	77	24	2	4	70	1.15
7100628--7100945	47	6.8	46	76	7	257	26	18	33	21	1.96
7100644--7100945	94	3.2	94	84	2	401	26	17	34	21	1.96
7100646--7100944	140	2.1	141	82	5	365	27	17	34	21	1.95
7100935--7101053	53	2.3	52	85	4	150	23	19	29	27	1.98
7101508--7101845	31	10.9	31	86	0	370	23	16	20	39	1.92
7101510--7101890	62	6.1	62	82	1	406	24	17	19	38	1.93
7101514--7101890	93	4.1	93	84	3	420	24	17	19	38	1.92
7103537--7104009	156	3.0	155	82	6	591	34	18	20	26	1.96
7104375--7104626	31	8.1	31	72	10	201	19	17	21	41	1.90
7104375--7104626	93	2.7	93	90	4	375	19	17	21	41	1.90
7106332--7106377	22	2.2	20	85	11	58	36	10	4	47	1.58
7106955--7107261	31	10.0	30	74	6	177	22	17	19	40	1.91
7106952--7107261	62	5.0	61	75	3	228	22	17	19	40	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7106953--7107252	93	3.2	92	82	3	309	22	17	20	40	1.92
7110730--7110809	31	2.6	31	86	4	99	33	22	18	25	1.97
7110795--7110853	23	2.6	23	86	0	82	27	32	18	22	1.97
7110793--7110861	23	3.2	20	73	17	57	26	30	18	24	1.98
7110890--7111067	55	3.2	54	77	5	169	43	33	10	12	1.77
7112421--7112548	42	3.1	41	72	13	129	32	19	10	38	1.85
7112422--7112579	80	2.0	80	82	2	192	31	20	8	38	1.84
7114396--7114420	13	1.9	13	100	0	50	68	0	0	32	0.90
7115017--7115264	35	7.1	34	80	7	232	45	14	6	33	1.71
7115017--7115264	70	3.6	69	79	7	272	45	14	6	33	1.71
7126142--7126221	34	2.3	37	74	10	87	20	16	6	57	1.60
7149337--7149426	2	46.0	2	93	4	157	51	0	0	48	1.00
7152063--7152117	4	13.8	4	100	0	110	50	23	0	25	1.49
7155629--7155663	18	1.9	18	88	0	52	48	14	28	8	1.73
7166872--7167127	126	2.0	127	92	3	426	42	14	7	35	1.73
7176951--7177022	8	9.4	7	73	20	56	16	0	2	80	0.83
7176959--7177021	30	2.2	30	86	10	89	17	0	1	80	0.78
7176948--7177022	15	4.9	15	77	9	80	17	0	2	80	0.84
7184174--7184287	57	2.0	57	94	0	201	22	17	14	45	1.84
7199660--7199706	24	2.0	24	82	0	58	8	61	17	12	1.55
7214525--7214787	129	2.0	129	90	2	411	20	18	20	40	1.91
7227881--7227906	7	3.7	7	100	0	52	88	0	11	0	0.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7231770--7231819	14	3.6	14	84	10	50	40	0	2	58	1.10
7231770--7231808	14	2.7	14	92	4	60	41	0	0	58	0.98
7239756--7239952	33	6.0	33	71	17	117	69	0	2	27	1.06
7239753--7239938	50	3.9	48	76	14	163	69	0	2	27	1.03
7239756--7239865	5	22.4	5	71	10	66	69	0	3	27	1.05
7239888--7239936	6	7.7	6	80	8	53	77	2	0	20	0.87
7239889--7239956	13	5.1	13	75	16	59	70	1	1	26	1.04
7244414--7244491	38	2.1	38	85	4	104	20	20	10	48	1.78
7254521--7254578	30	1.9	30	89	6	91	50	6	8	34	1.60
7254706--7254763	17	3.5	17	71	21	50	48	3	3	44	1.36
7254709--7254762	15	3.2	18	77	17	62	48	3	1	46	1.30
7255473--7255700	114	2.0	114	82	4	280	50	8	14	25	1.72
7255712--7255763	19	2.8	18	80	8	68	51	0	23	25	1.48
7255715--7255773	20	3.0	19	83	11	75	54	1	18	25	1.53
7255879--7255917	7	5.7	7	84	6	53	84	0	15	0	0.62
7255879--7255920	13	3.3	13	81	15	52	85	0	14	0	0.59
7255886--7255923	18	2.0	18	90	10	58	86	0	13	0	0.56
7255521--7255918	211	1.9	212	83	8	517	56	5	17	20	1.60
7256103--7256143	20	2.2	18	86	8	55	43	0	21	34	1.53
7256149--7256192	15	2.9	15	83	10	54	77	0	20	2	0.88
7256213--7256266	20	2.7	20	71	25	51	53	1	18	25	1.54
7256083--7256280	108	1.8	107	87	9	296	55	3	15	25	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7256288--7256329	17	2.2	20	88	12	63	50	2	23	23	1.61
7265923--7266073	28	5.3	28	79	9	171	38	11	10	39	1.76
7265913--7266073	57	2.8	57	87	4	218	39	11	9	38	1.75
7268648--7268884	26	9.7	26	72	14	139	24	14	24	36	1.93
7268607--7268808	95	2.1	95	83	5	248	25	13	23	36	1.92
7268675--7268881	73	2.9	73	83	2	260	24	14	24	36	1.93
7268838--7268971	23	5.8	22	81	7	135	21	13	28	36	1.91
7268840--7268971	44	2.9	45	83	8	142	21	13	28	36	1.91
7268982--7269023	22	1.9	22	90	0	66	45	9	14	30	1.77
7269963--7269988	3	8.7	3	100	0	52	30	0	0	69	0.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106