genome.fa.s2.2.7.7.80.10.50.1000.23.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  23  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9698389--9699181	62	12.9	62	88	3	1140	31	11	20	36	1.89
9698385--9699181	183	4.3	181	87	4	1091	31	11	20	36	1.88
9698385--9699181	366	2.2	367	89	2	1244	31	11	20	36	1.88
9698389--9699188	121	6.5	124	88	4	552	31	11	20	36	1.89
9700339--9700390	23	2.3	23	89	0	77	75	3	0	21	0.97
9700341--9700378	8	4.6	8	84	15	51	76	0	0	23	0.79
9700444--9700472	3	10.0	3	92	7	51	68	0	0	31	0.89
9700501--9700529	11	2.6	11	100	0	58	72	0	0	27	0.85
9701249--9701648	199	2.0	198	96	1	741	38	18	15	28	1.91
9708734--9708798	20	3.2	20	80	0	76	46	18	16	18	1.85
9713863--9713924	27	2.3	27	88	0	88	35	8	4	51	1.53
9724442--9724636	49	4.0	48	78	9	200	44	20	14	21	1.86
9724792--9724904	49	2.3	49	83	3	140	38	23	15	23	1.93
9724979--9725007	15	1.9	15	100	0	58	34	10	0	55	1.34
9731997--9732071	24	3.3	23	72	11	73	26	18	36	18	1.94
9731979--9732074	45	2.1	45	92	0	156	27	17	34	20	1.95
9734298--9734340	3	15.0	3	80	9	54	25	0	0	74	0.82
9734309--9734340	8	3.9	8	92	8	55	25	0	0	75	0.81
9735503--9735527	12	2.1	12	100	0	50	24	0	0	76	0.80
9736092--9736141	26	1.9	26	95	0	91	22	14	4	60	1.51
9736085--9736150	26	2.8	23	79	18	73	22	13	4	59	1.53
9740081--9740241	78	2.1	78	83	0	196	19	24	15	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9743575--9743620	22	2.1	22	84	8	58	52	21	8	17	1.71
9743511--9743905	118	3.4	118	86	3	509	44	25	12	17	1.84
9744684--9745295	309	2.0	308	90	0	965	29	17	13	39	1.87
9745590--9745673	22	3.6	22	75	17	89	40	27	13	19	1.88
9745615--9745693	26	3.2	26	67	20	78	39	26	11	22	1.88
9745593--9745697	48	2.2	48	94	0	183	40	26	11	21	1.87
9747088--9747840	59	12.7	59	79	3	602	33	13	17	36	1.88
9747085--9747828	177	4.2	178	79	4	725	33	13	17	36	1.88
9747085--9747844	117	6.4	118	78	2	691	33	13	17	36	1.88
9751261--9751620	189	1.9	189	84	3	483	28	18	22	30	1.97
9752419--9752797	189	2.0	189	86	1	526	28	17	22	31	1.97
9753806--9753830	12	2.1	12	100	0	50	36	0	8	56	1.29
9757783--9757822	6	6.0	7	83	16	50	60	0	0	40	0.97
9757783--9757822	14	3.0	13	89	10	55	60	0	0	40	0.97
9758637--9758690	19	3.2	16	78	19	56	75	1	1	20	0.98
9761942--9761970	15	1.9	15	100	0	58	34	0	3	62	1.12
9763355--9763422	2	35.5	2	79	8	79	52	1	1	44	1.19
9763689--9763736	16	2.8	18	78	15	57	54	0	2	43	1.12
9764402--9764480	23	3.4	23	82	6	97	30	10	36	22	1.87
9764572--9765514	104	9.2	103	73	6	592	28	14	32	24	1.95
9764924--9764973	23	2.2	23	81	0	55	36	14	30	20	1.91
9765022--9765170	23	6.4	23	68	4	84	28	14	34	22	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9764506--9765637	208	5.5	207	81	5	1144	28	14	32	24	1.95
9764506--9765068	104	5.5	104	79	2	519	28	14	32	23	1.94
9764508--9765433	405	2.3	404	81	4	1054	28	14	32	23	1.95
9765082--9765637	104	5.4	104	75	6	434	27	14	33	24	1.95
9765329--9765376	23	2.1	23	88	0	69	29	12	39	18	1.88
9765402--9765480	23	3.4	23	79	6	79	25	16	27	30	1.97
9766077--9766258	55	3.3	54	77	3	202	12	11	31	45	1.77
9766271--9766350	31	2.6	31	87	0	115	25	16	22	36	1.94
9768624--9768794	81	2.1	81	83	2	218	22	19	32	25	1.98
9770222--9770439	84	2.6	84	82	2	258	25	33	20	20	1.97
9770389--9770468	31	2.6	31	85	0	97	28	27	20	23	1.99
9770413--9770486	31	2.4	31	90	4	114	21	24	21	32	1.98
9770329--9770594	117	2.3	115	83	2	361	25	30	20	24	1.99
9770503--9770572	31	2.3	31	82	5	79	31	30	17	21	1.96
9770530--9770592	31	2.1	30	85	5	83	28	30	17	23	1.97
9775250--9775781	31	16.8	31	83	4	616	38	16	17	27	1.91
9776458--9776509	24	2.2	24	85	0	68	28	13	3	53	1.57
9776513--9776549	17	2.4	16	86	13	51	37	0	2	59	1.12
9776598--9776652	17	3.4	17	75	17	53	49	5	1	43	1.36
9784666--9784707	22	1.9	22	95	0	75	23	0	0	76	0.79
9792234--9792275	22	1.9	22	85	9	59	76	14	7	2	1.10
9792378--9792425	11	4.5	10	78	14	51	70	0	29	0	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9792378--9792439	14	4.7	13	76	13	56	72	0	27	0	0.85
9792378--9792430	18	2.7	21	82	11	67	69	0	30	0	0.88
9792384--9792433	26	2.0	25	88	4	73	70	0	30	0	0.88
9792385--9792441	26	2.2	26	84	3	71	71	0	28	0	0.86
9792378--9792441	12	4.9	13	73	16	53	71	0	28	0	0.86
9792397--9792443	14	3.2	14	84	6	58	72	0	27	0	0.85
9792390--9792446	15	3.7	16	75	17	57	71	0	28	0	0.86
9792475--9792539	20	3.3	19	85	6	69	66	0	32	1	1.01
9792573--9792658	23	4.0	22	76	13	81	63	0	36	0	0.94
9792577--9792685	40	3.1	34	77	18	114	63	0	36	0	0.95
9792581--9792668	40	2.2	41	89	6	144	65	0	34	0	0.93
9792596--9792674	40	2.0	40	100	0	158	62	0	37	0	0.96
9792616--9792684	15	4.9	15	75	20	69	60	0	39	0	0.97
9793108--9793133	3	8.7	3	100	0	52	69	0	0	30	0.89
9793340--9793584	121	2.0	121	88	1	366	43	14	11	31	1.80
9793757--9793801	10	4.6	10	81	13	58	71	2	0	26	0.98
9795596--9795660	26	2.5	26	76	18	73	24	3	0	72	0.99
9795599--9795652	7	7.4	7	80	15	56	24	1	0	74	0.92
9795826--9795906	32	2.5	31	82	9	92	19	7	0	72	1.07
9796247--9796279	17	1.9	17	93	0	57	0	27	0	72	0.85
9796537--9796591	23	2.4	23	81	6	58	9	7	21	61	1.50
9796578--9796619	21	2.0	21	90	4	66	2	2	21	73	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9796788--9796837	19	2.7	19	82	11	52	26	2	0	72	0.96
9803964--9804241	31	9.1	31	65	17	143	34	18	16	30	1.93
9803987--9804219	30	7.7	30	72	11	165	34	18	17	29	1.94
9804238--9804335	30	3.2	30	67	13	83	32	17	20	29	1.95
9803964--9804751	61	12.9	60	83	4	704	33	18	18	29	1.95
9804469--9804752	31	9.2	31	62	15	104	32	18	20	28	1.96
9804819--9805024	59	3.5	59	83	1	234	33	10	17	37	1.85
9804819--9805058	59	4.1	58	81	4	221	33	10	16	38	1.84
9805313--9805352	21	2.0	20	85	5	53	70	0	2	27	1.01
9805931--9806040	14	8.2	13	67	23	59	70	3	25	0	1.10
9806053--9806134	15	5.9	15	69	20	61	64	0	35	0	0.94
9806056--9806123	34	2.0	34	91	5	111	67	0	32	0	0.91
9806044--9806137	19	5.1	18	69	19	68	64	0	35	0	0.94
9806529--9806554	3	8.7	3	100	0	52	69	0	0	30	0.89
9810535--9810598	28	2.2	29	78	15	71	42	3	1	53	1.26
9813623--9813647	2	12.5	2	100	0	50	0	52	0	48	1.00
9822861--9822892	15	2.0	17	88	11	50	18	6	37	37	1.76
9826696--9826726	10	3.1	10	95	0	53	38	22	0	38	1.54
9836373--9836412	21	2.0	21	90	9	66	70	17	7	5	1.30
9837614--9837650	19	1.9	19	94	0	65	45	2	0	51	1.15
9837601--9837717	29	4.1	28	73	13	87	40	2	0	57	1.12
9837638--9837717	28	2.8	29	72	21	78	36	1	0	62	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9837663--9837718	30	1.9	30	85	3	78	37	0	0	62	0.95
9837703--9837741	10	4.1	10	83	12	55	41	0	0	58	0.98
9837710--9837751	18	2.5	17	88	11	61	45	0	0	54	0.99
9843827--9843937	33	3.4	33	80	0	132	19	8	36	35	1.82
9846479--9846586	29	3.8	29	83	3	139	17	22	13	46	1.83
9860558--9860600	8	5.2	8	77	5	50	0	11	4	83	0.78
9860558--9860591	17	1.9	18	94	5	61	0	11	2	85	0.71
9866220--9866265	23	2.0	23	83	8	58	60	4	2	32	1.28
9870651--9870697	14	3.4	14	87	0	67	78	0	4	17	0.90
9870657--9870695	20	1.9	20	89	5	60	79	0	5	15	0.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106