genome.fa.s2.2.7.7.80.10.50.1000.94.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  94  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35864703--35864891	66	2.9	66	83	5	231	28	30	13	28	1.94
35864698--35864913	22	9.8	22	73	9	138	27	30	14	27	1.95
35864977--35865059	22	3.9	21	71	4	67	31	27	12	28	1.92
35864974--35865077	21	4.9	21	72	10	77	30	26	12	29	1.93
35865136--35865197	21	2.9	21	82	2	61	30	29	11	29	1.91
35864812--35865210	164	2.4	165	84	5	506	31	25	13	30	1.93
35865039--35865424	120	3.2	120	80	9	415	31	22	12	33	1.91
35865556--35865615	22	2.8	22	85	9	72	78	0	1	20	0.84
35865565--35865615	7	7.4	7	85	10	70	82	0	0	17	0.67
35867032--35867056	13	1.9	13	100	0	50	72	4	0	24	1.02
35869265--35869376	59	1.9	58	90	0	170	28	7	19	43	1.77
35872606--35872661	29	1.9	29	88	0	85	35	8	1	53	1.43
35872916--35872982	30	2.3	30	89	2	100	53	1	7	37	1.38
35879044--35879077	15	2.3	15	89	0	50	79	0	2	17	0.86
35880167--35880195	2	14.5	2	100	0	58	0	48	0	51	1.00
35882566--35882631	33	2.0	34	94	5	118	34	15	18	31	1.92
35891961--35891997	18	2.1	18	94	0	65	10	21	16	51	1.74
35894592--35894617	12	2.2	12	100	0	52	42	42	0	15	1.47
35899167--35899196	2	15.0	2	92	0	51	50	0	3	46	1.18
35907250--35907275	12	2.2	12	100	0	52	23	0	7	69	1.14
35907255--35907295	18	2.2	19	86	4	57	36	0	4	58	1.20
35910623--35910664	15	3.0	14	83	10	50	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35912803--35912834	2	16.0	2	100	0	64	50	0	0	50	1.00
35915243--35915274	14	2.1	16	88	11	50	34	0	6	59	1.23
35918814--35918892	40	2.0	41	85	7	108	31	6	15	46	1.70
35918930--35918972	22	2.0	22	90	0	68	48	0	0	51	1.00
35919853--35919878	2	13.0	2	100	0	52	0	50	0	50	1.00
35927411--35927498	27	3.2	27	75	9	88	40	11	10	37	1.75
35927411--35927509	27	3.6	27	76	8	83	40	12	9	38	1.74
35927416--35927686	83	3.0	95	77	11	237	39	13	9	37	1.78
35927520--35927729	55	3.8	55	84	3	219	38	13	10	37	1.80
35927513--35927735	83	2.7	82	82	3	252	39	13	9	36	1.79
35927548--35927811	28	9.7	27	76	6	88	39	14	9	37	1.79
35929134--35929191	30	2.0	30	86	3	82	44	3	8	43	1.51
35933055--35933372	85	3.8	85	86	3	414	38	1	14	44	1.55
35936005--35936058	25	2.2	25	93	0	90	38	1	9	50	1.45
35939609--35939671	26	2.6	23	75	18	65	49	1	0	49	1.10
35939609--35939674	8	8.1	8	73	15	55	48	1	0	50	1.10
35941595--35941632	15	2.5	15	86	0	58	34	7	23	34	1.84
35941858--35941902	22	2.0	22	83	8	56	35	0	0	62	0.96
35941865--35941946	35	2.4	35	89	2	121	26	0	1	70	0.94
35941887--35941932	23	2.0	23	83	8	58	26	0	0	71	0.85
35943517--35943631	23	4.9	23	77	12	92	34	24	12	28	1.91
35943584--35943736	26	6.2	26	75	11	135	36	22	13	27	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35943563--35943798	95	2.5	95	84	3	289	37	22	13	26	1.91
35943563--35943691	26	5.5	22	76	12	82	34	24	14	26	1.94
35943727--35943785	21	2.9	21	87	2	84	42	20	13	23	1.88
35943563--35943797	26	9.9	26	71	18	74	37	22	13	26	1.91
35944133--35944178	23	2.0	23	83	8	58	76	2	17	4	1.06
35948398--35948441	22	2.0	22	100	0	88	45	13	9	31	1.75
35954831--35954860	2	15.0	2	100	0	60	50	0	0	50	1.00
35955684--35955712	14	2.1	14	100	0	58	6	24	6	62	1.45
35966684--35966785	51	2.0	51	98	0	195	33	16	15	34	1.91
35971207--35971240	2	17.5	2	87	6	52	50	2	0	47	1.16
35974680--35974723	2	22.0	2	100	0	88	50	0	0	50	1.00
35980046--35980085	2	21.0	2	90	10	66	47	0	0	52	1.00
35980046--35980092	16	3.1	15	87	9	51	46	4	0	48	1.21
35982814--35982867	23	2.3	23	83	0	72	25	12	24	37	1.91
35982967--35983015	22	2.2	22	88	0	71	42	28	8	20	1.80
35983640--35983691	22	2.3	23	75	15	56	59	5	25	9	1.51
35987948--35987998	2	25.5	2	91	0	84	47	0	3	49	1.20
35988376--35988422	3	16.3	3	82	8	62	29	2	2	65	1.15
35989878--35990609	379	1.9	378	94	0	1286	27	18	19	34	1.95
35990716--35990746	12	2.6	12	89	0	53	16	0	3	80	0.83
36000277--36000342	34	2.0	33	93	3	114	16	30	21	30	1.95
36003050--36003092	17	2.7	15	82	10	50	25	0	11	62	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36003070--36003118	20	2.4	21	82	3	55	24	0	8	67	1.18
36003089--36003132	22	2.0	22	91	4	72	22	0	6	70	1.11
36004222--36004253	14	2.3	14	94	0	55	37	3	6	53	1.42
36016417--36016441	6	4.2	6	100	0	50	0	36	16	48	1.46
36020755--36020819	29	2.3	29	83	2	78	40	3	0	56	1.15
36026153--36026200	16	3.1	16	74	14	55	70	12	0	16	1.16
36026253--36026292	13	3.1	14	79	17	50	52	0	0	47	1.00
36027101--36027189	46	1.9	46	84	8	119	52	11	23	12	1.71
36027401--36027507	35	3.1	35	77	0	106	30	11	8	49	1.68
36027834--36027903	31	2.3	29	77	15	72	45	7	4	42	1.51
36027963--36028020	30	2.0	30	83	10	75	43	6	3	46	1.47
36033770--36033798	2	14.5	2	100	0	58	48	0	51	0	1.00
36033851--36033880	2	15.0	2	100	0	60	50	0	50	0	1.00
36043294--36043513	122	1.8	121	89	4	345	33	6	19	40	1.77
36043439--36043576	73	1.9	74	83	8	183	31	8	15	43	1.78
36045215--36045260	2	23.5	2	95	4	85	50	0	0	50	1.00
36053728--36053768	21	2.0	20	100	0	73	43	4	4	43	1.47
36053952--36053999	20	2.3	20	85	3	60	41	8	0	50	1.33
36056352--36056385	14	2.4	14	85	0	50	35	0	2	61	1.11
36058121--36058181	2	31.0	2	85	3	70	50	4	1	42	1.33
36058244--36058270	2	13.5	2	100	0	54	48	0	0	51	1.00
36059843--36059881	18	2.2	18	90	0	60	23	0	0	76	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36059853--36059906	18	3.0	18	79	12	58	29	3	0	66	1.09
36060084--36060122	14	2.8	14	88	0	60	30	0	0	69	0.89
36060810--36060909	37	2.7	37	74	10	105	12	39	14	35	1.82
36066314--36066342	2	15.0	2	92	7	51	48	0	0	51	1.00
36074202--36074427	103	2.2	103	91	0	364	26	13	23	36	1.92
36074367--36074445	39	2.0	39	90	2	122	25	13	26	34	1.94
36075259--36075662	216	1.9	216	89	2	632	34	18	22	25	1.96
36077570--36077635	26	2.8	23	79	18	73	57	6	13	22	1.58
36077577--36077628	26	2.0	26	96	0	95	57	7	13	21	1.61
36079191--36079344	24	6.5	24	77	4	143	22	30	16	29	1.96
36079171--36079320	69	2.2	69	87	0	210	22	31	17	28	1.96
36083914--36083940	3	9.0	3	100	0	54	33	0	0	66	0.92
36094236--36094330	29	3.3	29	77	5	102	43	5	30	21	1.74
36094579--36094675	35	2.8	35	80	0	104	21	11	18	48	1.79
36099414--36099444	13	2.5	12	94	5	53	51	0	32	16	1.44
36099667--36099758	29	3.2	29	85	0	121	41	5	31	21	1.76
36099966--36100080	35	3.3	35	74	4	106	22	13	17	46	1.83
36103528--36103591	29	2.2	29	86	8	87	28	4	20	46	1.70
36108501--36108539	22	1.9	21	85	15	55	35	5	15	43	1.69
36109129--36109183	26	2.2	25	77	6	58	18	9	5	67	1.38
36110550--36110616	15	3.8	18	74	20	61	19	2	1	76	1.00
36110558--36110623	7	9.4	7	75	6	53	18	3	1	77	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36110545--36110624	35	2.4	32	83	10	97	17	2	1	78	0.92
36110791--36110945	81	1.9	78	83	6	195	41	3	9	45	1.55
36112170--36112226	29	2.0	29	92	0	96	24	10	19	45	1.81
36112203--36112291	36	2.5	37	89	5	130	20	11	23	44	1.83
36112288--36112454	76	2.2	76	82	2	192	26	16	17	38	1.92
36112275--36112409	41	3.5	40	70	12	118	25	18	20	35	1.95
36113245--36113471	76	3.0	76	82	6	253	40	19	15	24	1.90
36113252--36113490	35	6.5	35	68	18	132	39	20	15	24	1.91
36113476--36113528	29	1.9	28	82	17	67	35	13	11	39	1.80
36117468--36117546	31	2.5	32	82	10	92	26	25	26	21	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106