genome.fa.s2.2.7.7.80.10.50.1000.91.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  91  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34747537--34747703	60	2.8	60	86	0	228	32	10	25	31	1.90
34750585--34750649	31	2.1	32	94	2	114	49	3	3	44	1.33
34751316--34751350	2	18.5	2	88	11	56	51	0	0	48	1.00
34762989--34763139	78	1.9	78	95	0	275	39	6	23	31	1.80
34764872--34764917	24	1.9	24	81	0	56	26	0	8	65	1.21
34794747--34794782	17	2.1	17	94	0	63	19	5	33	41	1.75
34805123--34805179	30	1.9	30	82	13	73	63	1	1	33	1.15
34805301--34805340	19	2.0	20	85	4	55	67	2	0	30	1.04
34809205--34809230	5	5.2	5	100	0	52	0	61	0	38	0.96
34818924--34818961	19	2.0	19	94	0	67	42	28	0	28	1.56
34819544--34819628	26	3.3	26	70	20	79	31	18	10	38	1.85
34819561--34819627	25	2.6	26	80	2	82	34	16	11	37	1.85
34819560--34819645	26	3.4	25	72	15	77	36	16	12	34	1.87
34825902--34825934	17	1.9	17	88	11	50	39	9	0	51	1.34
34826962--34827006	23	1.9	24	86	4	65	37	0	0	62	0.96
34837377--34837447	30	2.4	30	85	4	90	36	4	5	53	1.44
34837766--34837804	17	2.4	17	86	4	53	53	0	5	41	1.23
34837769--34838253	222	2.2	226	87	5	697	47	3	6	42	1.48
34838321--34838378	18	3.0	18	76	14	53	44	3	1	50	1.29
34838339--34838377	21	1.9	20	84	5	51	48	2	2	46	1.29
34848339--34848373	2	17.5	2	88	11	54	48	2	0	48	1.16
34848173--34848577	206	2.0	207	95	1	733	50	8	3	37	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34874105--34874131	12	2.2	12	100	0	54	59	0	14	25	1.36
34894141--34894369	121	1.9	117	84	5	307	30	6	1	61	1.31
34894295--34894341	22	2.1	22	84	7	60	40	2	0	57	1.11
34897934--34897970	19	1.9	19	94	0	65	18	0	2	78	0.87
34897932--34898006	13	5.3	13	73	20	62	24	0	1	74	0.89
34897933--34898006	5	15.4	5	78	16	59	22	0	1	75	0.88
34901655--34901686	15	2.1	15	94	0	55	25	25	12	37	1.91
34903361--34903420	25	2.4	25	97	0	111	26	28	11	33	1.91
34909178--34909215	14	2.8	14	88	4	51	73	0	5	21	1.02
34909349--34909412	17	3.9	17	77	18	57	68	0	3	28	1.04
34909349--34909412	15	4.6	14	70	18	53	68	0	3	28	1.04
34909366--34909416	16	3.2	16	77	8	59	66	0	3	29	1.09
34909518--34909562	20	2.2	20	80	7	56	68	0	8	22	1.16
34909610--34909648	16	2.3	17	86	8	53	41	10	5	43	1.61
34910012--34910344	166	2.0	166	96	0	612	39	15	16	27	1.89
34911088--34911121	7	4.9	7	92	0	50	20	0	2	76	0.92
34911077--34911117	18	2.2	19	86	4	57	17	2	4	75	1.08
34911728--34911774	6	7.5	6	79	15	51	0	23	0	76	0.78
34911731--34911781	12	4.3	12	82	12	61	0	25	0	74	0.82
34911737--34911781	16	2.6	18	80	20	60	0	26	0	73	0.84
34911728--34911781	22	2.7	20	88	8	74	0	25	0	74	0.83
34911794--34911833	14	2.9	15	78	14	50	0	35	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34915250--34915288	17	2.3	17	91	8	62	41	0	0	58	0.98
34917980--34918023	14	3.4	14	74	25	51	68	0	6	25	1.14
34921008--34921055	22	2.2	21	81	3	51	45	4	0	50	1.21
34931290--34931323	2	17.0	2	100	0	68	50	0	50	0	1.00
34936877--34936924	13	3.9	12	79	20	55	43	2	2	52	1.24
34936866--34936924	8	8.3	7	75	14	50	44	1	1	52	1.21
34936871--34936925	15	3.8	14	81	13	58	45	1	1	50	1.22
34936981--34937029	25	2.0	25	84	8	64	46	0	2	51	1.12
34937038--34937099	23	2.5	25	80	17	76	58	0	1	40	1.08
34961188--34961230	19	2.3	19	95	0	77	44	2	9	44	1.49
34966765--34966958	96	2.0	96	97	0	370	39	13	10	36	1.80
34968534--34968583	2	25.5	2	87	4	75	50	2	2	46	1.24
34980959--34981041	39	2.0	41	84	11	109	38	8	18	34	1.81
34983128--34983188	21	2.8	22	82	5	88	27	11	18	42	1.84
34983215--34983278	23	2.8	23	87	0	101	37	29	9	23	1.86
34983235--34983712	26	19.7	26	75	13	319	37	24	12	25	1.90
34983284--34983635	95	3.7	95	88	0	533	38	23	12	26	1.90
34983264--34983711	190	2.3	192	88	4	659	37	23	12	26	1.90
34983408--34983735	169	2.0	163	86	6	462	36	24	13	25	1.92
34983691--34983762	22	3.3	21	76	5	72	43	23	11	22	1.85
34985043--34985086	21	2.0	22	82	4	54	52	13	0	34	1.41
34998590--34998648	30	1.9	31	86	3	84	62	11	20	5	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35005334--35005864	108	4.9	107	79	7	520	45	7	11	34	1.70
35010530--35010936	208	2.0	205	95	3	739	38	19	4	36	1.73
35013037--35013082	23	2.0	24	83	12	60	56	0	6	36	1.25
35016554--35016901	176	2.0	176	98	0	669	38	13	12	34	1.84
35019590--35019926	185	1.8	186	86	3	491	32	7	13	46	1.71
35020791--35020842	23	2.3	22	86	3	68	19	1	19	59	1.47
35020992--35021033	22	1.9	22	90	0	66	52	9	7	30	1.61
35029391--35029417	14	1.9	14	100	0	54	0	7	18	74	1.05
35030731--35030756	2	13.0	2	100	0	52	50	0	0	50	1.00
35036347--35036384	20	1.9	20	94	0	67	44	23	5	26	1.74
35044385--35044448	2	31.5	2	96	3	119	50	0	0	48	1.01
35047174--35047224	24	2.1	24	96	0	93	37	21	17	23	1.94
35048369--35048538	34	5.0	34	66	21	88	22	7	21	48	1.75
35048369--35048538	68	2.5	68	83	7	186	22	7	21	48	1.75
35048901--35048950	24	2.1	22	82	17	57	4	22	2	72	1.12
35049301--35049352	27	1.9	27	81	14	63	48	1	0	50	1.12
35049354--35049388	17	2.1	16	94	5	61	57	0	0	42	0.99
35049309--35049392	35	2.4	35	83	13	95	50	1	0	48	1.08
35049413--35049584	27	7.3	22	76	17	82	54	1	0	43	1.10
35049444--35049571	27	4.9	27	88	6	149	52	0	0	46	1.06
35049444--35049574	49	2.6	53	82	11	161	53	0	0	45	1.05
35049496--35049580	27	3.2	27	91	3	102	54	0	0	45	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35050065--35050107	21	2.0	23	86	9	63	44	13	13	27	1.83
35056470--35056500	15	2.1	14	94	5	53	77	0	6	16	0.97
35060579--35061317	356	2.1	347	83	3	890	42	10	14	31	1.81
35061326--35062077	355	2.1	354	81	4	879	42	10	16	30	1.82
35063333--35063393	25	2.4	24	83	8	68	29	6	1	62	1.30
35067263--35067324	25	2.5	25	89	5	90	43	8	16	32	1.77
35071829--35071875	23	2.0	23	95	0	85	19	8	10	61	1.53
35075109--35075156	19	2.5	19	83	12	62	18	0	4	77	0.93
35075124--35075154	16	1.9	16	93	0	53	19	0	0	80	0.71
35076056--35076133	15	5.3	14	73	22	70	2	23	0	74	0.94
35076059--35076135	4	19.2	4	77	19	81	2	23	0	74	0.95
35076074--35076135	27	2.3	28	86	10	94	3	25	0	70	1.02
35076059--35076137	35	2.3	34	83	14	101	2	24	0	73	0.96
35076058--35076131	31	2.5	30	79	18	91	2	22	0	74	0.95
35076047--35076134	45	1.9	46	88	6	135	2	26	0	71	0.98
35076164--35076198	11	3.2	11	87	0	52	0	17	0	82	0.66
35076154--35076201	17	2.9	17	90	6	73	2	20	0	77	0.88
35076609--35076691	21	4.2	19	69	19	55	22	2	1	73	1.02
35076897--35077249	62	5.9	61	79	11	392	36	20	11	32	1.88
35076803--35077225	113	3.7	113	84	6	460	36	20	12	31	1.89
35077009--35077249	121	2.0	123	90	4	389	36	20	10	31	1.87
35093232--35093279	13	3.4	14	81	15	55	0	35	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35093243--35093281	21	1.9	20	89	5	60	0	41	0	58	0.98
35093669--35093715	20	2.4	19	76	13	51	25	0	2	72	0.96
35097614--35097775	81	2.0	81	98	1	308	20	25	14	37	1.92
35099303--35099382	22	3.7	22	68	8	65	26	10	17	46	1.79
35099412--35099717	26	12.7	26	74	13	198	35	25	13	25	1.93
35099439--35099734	95	3.1	95	87	0	412	35	24	14	25	1.93
35119788--35119971	62	3.0	62	79	3	210	25	29	15	28	1.96
35119788--35119967	60	3.0	60	80	1	171	25	30	16	27	1.96
35120593--35120648	28	1.9	30	89	7	89	3	21	1	73	1.08
35120691--35120733	15	2.9	15	100	0	86	0	20	0	79	0.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106