genome.fa.s2.2.7.7.80.10.50.1000.43.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  43  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16275418--16275534	37	3.2	37	81	7	150	29	9	36	23	1.87
16275420--16275542	35	3.5	35	82	5	140	30	8	35	25	1.86
16280196--16280226	16	1.9	16	93	0	53	67	12	6	12	1.40
16284470--16284588	43	2.8	43	85	2	141	21	35	19	23	1.96
16294421--16294458	5	7.8	5	94	5	69	39	21	0	39	1.53
16294493--16294538	15	3.1	15	81	12	58	56	17	2	23	1.52
16300920--16301054	40	3.4	40	91	2	202	17	18	42	20	1.89
16302608--16302789	73	2.5	73	80	8	194	20	19	19	40	1.91
16309564--16309740	35	5.2	34	74	15	145	35	26	12	24	1.92
16309595--16309700	32	3.2	32	73	12	115	33	26	14	25	1.94
16309558--16309740	67	2.7	66	86	5	251	34	26	13	25	1.93
16313618--16313710	25	3.1	31	73	19	90	16	21	12	49	1.78
16313618--16313679	31	2.0	32	87	3	90	16	22	12	48	1.80
16313927--16313973	24	1.9	25	83	12	62	34	25	12	27	1.92
16314079--16314122	22	2.0	22	82	8	54	45	22	6	25	1.77
16333209--16333258	21	2.3	23	79	10	59	60	12	0	28	1.32
16336349--16336396	5	9.4	5	84	11	62	2	18	0	79	0.84
16336567--16336644	33	2.3	33	84	8	95	32	24	12	30	1.93
16336663--16336737	35	2.2	34	79	13	82	38	30	8	22	1.83
16340601--16340638	2	19.0	2	88	0	58	44	0	5	50	1.24
16340686--16340805	42	2.9	42	91	0	168	25	32	19	23	1.97
16350418--16350541	62	2.0	62	93	0	212	33	21	16	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16352768--16352872	38	2.7	39	80	4	131	22	40	17	19	1.91
16366553--16366591	20	1.9	21	89	5	62	71	2	2	23	1.10
16369112--16369286	43	4.1	43	87	4	219	21	17	38	22	1.93
16369272--16369334	20	3.2	20	73	10	67	25	3	39	31	1.71
16379345--16379369	2	12.5	2	100	0	50	52	0	0	48	1.00
16383382--16383421	21	2.0	20	90	5	62	20	2	47	30	1.63
16386945--16386993	21	2.3	21	100	0	98	30	22	26	20	1.98
16387199--16387301	38	2.7	38	83	6	127	22	41	16	19	1.90
16388631--16388679	21	2.3	21	80	19	50	26	24	20	28	1.99
16392440--16392564	42	3.0	42	91	0	196	22	23	32	21	1.98
16392605--16392638	2	17.0	2	87	0	50	50	5	0	44	1.26
16392605--16392638	10	3.4	10	91	0	59	50	5	0	44	1.26
16401839--16401882	22	2.0	22	86	8	63	40	6	20	31	1.79
16405574--16405620	21	2.2	22	88	3	69	27	19	14	38	1.91
16406825--16406885	30	2.0	30	93	0	104	32	11	21	34	1.89
16408481--16408521	21	2.1	19	86	9	55	26	0	12	60	1.31
16408631--16409563	465	2.0	466	96	1	1719	33	20	19	27	1.96
16416164--16416202	20	2.0	20	84	0	51	7	12	12	66	1.43
16420071--16420109	15	2.6	15	100	0	78	56	7	7	28	1.55
16420845--16420889	2	22.5	2	95	0	81	48	0	2	48	1.13
16424450--16424487	8	4.6	8	90	3	58	73	2	0	23	0.95
16424845--16424931	34	2.5	35	81	1	104	39	8	27	25	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16426123--16426165	2	22.0	2	95	4	79	48	0	0	51	1.00
16426190--16426238	2	24.0	2	91	4	80	46	2	0	51	1.12
16429561--16429614	27	2.0	27	88	0	81	50	5	14	29	1.66
16429605--16429714	35	3.2	35	92	2	177	41	4	27	26	1.75
16429789--16429826	14	2.7	14	84	12	51	71	0	28	0	0.87
16431184--16431210	13	2.1	13	100	0	54	66	0	0	33	0.92
16431123--16431321	99	2.0	96	92	6	330	45	11	4	38	1.58
16433460--16433575	42	2.8	42	87	0	160	24	22	31	21	1.98
16433621--16433659	2	19.0	2	84	5	51	46	5	2	46	1.38
16440810--16440936	43	3.0	43	91	0	209	25	17	32	25	1.97
16442377--16442465	45	2.0	45	100	0	178	29	8	15	46	1.77
16448161--16448279	40	3.0	40	84	6	154	32	21	21	24	1.98
16448163--16448239	22	3.7	22	62	19	56	32	23	22	22	1.98
16449890--16450136	43	5.8	43	91	1	372	25	19	31	22	1.98
16449890--16450136	128	1.9	128	90	1	388	25	19	31	22	1.98
16449885--16450136	85	3.0	85	89	2	380	25	19	31	23	1.98
16450984--16451011	13	2.2	13	100	0	56	50	7	0	42	1.30
16450997--16451165	35	4.8	35	80	5	169	41	11	8	38	1.72
16455911--16455946	15	2.3	16	90	9	65	0	36	0	63	0.94
16459527--16459615	47	1.9	47	84	8	121	16	14	47	21	1.83
16464194--16464303	37	2.9	38	89	5	170	30	10	37	22	1.87
16467666--16467695	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16471235--16471357	37	3.1	37	77	17	138	26	10	37	25	1.88
16471258--16471343	45	1.9	45	88	4	129	25	10	38	25	1.88
16476142--16476201	23	2.6	23	89	0	84	26	1	38	33	1.67
16476534--16476576	21	2.0	21	82	8	52	37	16	25	20	1.93
16476480--16476613	60	2.2	61	80	7	141	30	21	20	26	1.98
16480157--16480410	128	2.0	126	99	0	490	38	19	15	25	1.92
16481234--16481405	43	4.0	42	85	5	193	22	18	36	23	1.95
16486913--16486942	2	15.0	2	100	0	60	50	0	0	50	1.00
16488173--16488215	19	2.3	19	87	0	59	2	34	0	62	1.08
16488185--16488226	15	2.7	15	88	7	57	0	35	2	61	1.09
16499701--16500051	180	2.0	180	86	4	494	32	15	11	40	1.83
16501230--16501254	3	8.3	3	100	0	50	0	36	0	64	0.94
16502018--16502067	2	25.0	2	100	0	100	50	0	0	50	1.00
16503768--16503887	36	3.5	32	76	17	116	46	10	5	37	1.61
16503768--16503989	35	6.4	35	78	4	191	43	11	7	37	1.69
16530020--16530080	13	4.1	14	74	16	52	47	4	0	47	1.23
16529992--16530080	45	2.0	45	84	4	117	43	4	1	50	1.29
16531596--16531626	16	1.9	16	93	0	53	35	0	64	0	0.94
16538875--16538908	16	2.1	16	88	0	50	44	0	5	50	1.26
16539481--16539541	30	2.0	30	90	0	95	26	18	13	42	1.86
16540412--16540437	2	13.0	2	100	0	52	50	0	0	50	1.00
16549363--16549407	22	2.0	22	91	0	72	33	8	17	40	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16549373--16549476	35	3.0	35	92	0	163	37	5	14	42	1.70
16552143--16552511	184	2.0	183	89	2	562	29	13	18	37	1.90
16558042--16558096	2	27.0	2	87	3	74	49	0	5	45	1.25
16558174--16558208	2	18.0	2	94	5	63	48	0	0	51	1.00
16558063--16558280	112	2.0	110	93	2	366	32	8	19	38	1.83
16559094--16559152	21	2.8	21	78	2	55	23	16	27	32	1.96
16569154--16569180	2	13.5	2	100	0	54	48	0	0	51	1.00
16570931--16570963	17	1.9	17	88	11	50	42	0	6	51	1.26
16580957--16580981	2	12.5	2	100	0	50	48	0	0	52	1.00
16587873--16587902	15	2.0	15	93	0	51	50	0	0	50	1.00
16592344--16592373	3	10.0	3	100	0	60	66	0	33	0	0.92
16593422--16593454	16	2.1	16	100	0	66	30	39	18	12	1.87
16594394--16594451	29	2.0	29	83	6	73	58	0	0	41	0.98
16595334--16595360	4	6.8	4	100	0	54	25	0	0	74	0.83
16606521--16606570	19	2.6	19	90	0	73	56	2	2	40	1.22
16612304--16612480	39	4.6	39	90	2	243	25	36	14	24	1.93
16612304--16612516	78	2.8	75	80	5	239	24	38	14	22	1.92
16616568--16616697	43	3.0	43	84	2	163	23	32	17	26	1.97
16617505--16617545	21	2.0	21	85	9	57	48	4	29	17	1.67
16624442--16624582	39	3.6	39	87	3	196	24	31	14	29	1.94
16625460--16625501	20	2.1	20	86	8	59	64	0	30	4	1.14
16632749--16632773	5	5.0	5	100	0	50	40	0	20	40	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16638963--16639164	101	2.0	99	97	2	386	26	23	16	32	1.96
16647514--16647673	73	2.2	73	87	2	223	41	17	17	23	1.89
16648055--16648202	67	2.2	68	89	3	219	26	12	26	34	1.92
16648093--16648214	35	3.6	35	68	10	108	28	13	26	31	1.93
16657723--16657947	43	5.2	43	86	4	281	25	17	34	22	1.96
16657766--16657957	89	2.2	89	91	0	312	25	19	33	21	1.97
16661593--16661636	21	2.2	20	84	12	54	22	6	4	65	1.35
16662606--16662635	11	2.7	11	89	0	51	56	0	0	43	0.99
16663159--16663199	13	3.2	13	80	13	50	65	0	34	0	0.93
16663154--16663198	20	2.2	20	100	0	90	64	0	35	0	0.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106