genome.fa.s2.2.7.7.80.10.50.1000.54.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  54  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20411356--20411459	29	3.6	28	79	8	104	39	6	9	44	1.64
20412719--20412763	21	2.3	20	82	14	58	42	2	0	55	1.12
20412800--20412859	32	1.9	31	86	3	84	18	26	25	30	1.98
20418316--20418538	29	7.6	29	77	5	198	40	10	11	38	1.75
20418729--20418774	20	2.3	21	78	17	53	43	4	6	45	1.49
20426060--20426091	2	16.5	2	93	6	57	0	0	46	53	1.00
20426183--20426306	38	3.2	38	69	20	119	23	12	36	27	1.91
20426206--20426337	36	3.4	36	73	18	122	21	12	38	26	1.90
20426183--20426350	80	2.1	80	92	0	273	24	13	34	27	1.93
20427952--20428208	68	3.8	68	82	3	311	34	17	10	37	1.84
20430883--20430919	12	3.3	12	78	21	53	35	13	16	35	1.88
20431138--20431183	16	2.9	16	90	0	65	71	6	2	19	1.18
20432514--20432675	28	5.6	28	85	8	175	39	9	11	39	1.74
20432514--20432666	59	2.6	59	84	6	188	40	9	11	38	1.74
20432665--20432727	22	2.9	22	95	4	110	41	4	15	38	1.69
20432849--20432881	17	1.9	17	88	11	50	39	3	15	42	1.62
20437017--20437041	13	1.9	13	100	0	50	48	8	0	44	1.32
20443230--20443267	20	1.9	20	100	0	76	44	21	5	28	1.73
20445732--20445779	17	2.8	18	72	15	57	41	4	18	35	1.70
20447272--20447313	18	2.3	18	95	0	75	40	0	11	47	1.40
20454113--20454178	22	3.0	22	81	0	87	40	22	7	28	1.81
20457823--20457997	67	2.6	67	87	2	255	36	26	12	24	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20457849--20457977	32	3.9	31	77	16	125	35	27	10	25	1.90
20457830--20457997	35	5.1	32	73	13	126	36	26	13	23	1.92
20459132--20459207	37	2.1	37	92	0	125	44	27	6	21	1.76
20462793--20462918	42	3.0	42	83	0	162	23	17	34	24	1.96
20462959--20463004	2	22.5	2	86	4	65	47	2	2	45	1.27
20462919--20463082	81	2.0	80	97	2	310	37	3	18	39	1.69
20463040--20463075	2	18.0	2	94	0	63	50	2	0	47	1.15
20465600--20465790	29	6.6	29	83	5	244	37	9	13	39	1.78
20474705--20474774	26	2.7	26	88	6	97	47	10	2	40	1.52
20476391--20476423	15	2.2	15	100	0	66	39	21	39	0	1.53
20476636--20476728	40	2.4	40	80	3	109	21	38	16	23	1.92
20476856--20476883	2	14.0	2	100	0	56	50	0	0	50	1.00
20480006--20480220	106	2.0	106	93	0	367	26	3	32	38	1.74
20483169--20483196	13	2.2	13	100	0	56	39	7	14	39	1.73
20489703--20489775	31	2.4	31	97	0	137	28	16	16	38	1.90
20493588--20493835	118	2.1	118	89	0	370	23	18	30	28	1.97
20493770--20493896	56	2.3	56	92	0	209	20	24	27	27	1.99
20493804--20493923	56	2.1	56	81	3	134	21	26	28	23	1.99
20493652--20494010	174	2.1	174	89	0	538	22	21	29	27	1.99
20493584--20494132	292	1.9	292	89	0	846	22	20	29	27	1.99
20493826--20494275	118	3.8	118	88	0	650	23	22	28	26	1.99
20496603--20496889	145	2.0	145	89	0	439	27	21	21	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20498280--20498674	31	12.7	31	88	0	513	39	20	16	23	1.91
20499360--20499410	24	2.1	24	85	0	66	35	21	15	27	1.94
20499404--20499537	47	2.9	47	86	0	178	23	30	20	26	1.98
20499416--20499595	94	1.9	94	81	4	220	23	28	21	27	1.99
20504558--20504723	29	5.6	28	82	7	161	39	11	12	36	1.80
20504550--20504723	59	3.0	58	82	4	197	39	11	12	36	1.80
20512361--20512401	21	2.0	21	90	0	64	48	2	4	43	1.37
20515626--20515673	2	24.0	2	100	0	96	50	0	0	50	1.00
20516288--20516332	17	2.8	16	83	10	56	73	2	24	0	0.95
20516464--20516711	72	3.6	67	80	9	234	62	4	31	2	1.27
20517212--20517517	62	5.0	61	85	4	364	28	18	31	21	1.97
20518464--20518518	22	2.5	22	87	0	74	47	10	5	36	1.62
20518488--20518671	36	5.2	36	82	7	200	44	14	7	34	1.72
20518486--20518671	71	2.7	70	80	5	234	44	13	6	34	1.71
20520151--20520201	17	2.9	17	80	8	50	49	0	5	45	1.26
20524275--20524391	47	2.5	47	90	0	171	25	10	12	51	1.71
20524782--20524822	12	3.3	12	86	3	55	24	2	0	73	0.96
20524779--20524813	13	2.8	12	83	8	52	22	5	0	71	1.07
20524782--20524829	12	3.9	12	86	2	51	27	2	2	68	1.11
20525129--20525159	6	5.2	6	92	0	53	19	0	29	51	1.47
20531715--20531788	30	2.5	30	84	8	89	25	48	10	14	1.77
20545035--20545122	36	2.5	35	85	5	115	32	37	10	19	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20545040--20545122	35	2.3	36	83	6	107	33	39	8	18	1.80
20546390--20546446	20	2.8	20	81	0	60	61	12	0	26	1.31
20550798--20551142	180	1.9	179	86	2	487	34	11	15	38	1.84
20552763--20552801	20	2.0	19	85	5	51	56	5	23	15	1.59
20553831--20553987	20	8.1	20	70	22	97	24	3	41	29	1.72
20565437--20565472	13	2.8	13	91	0	54	30	0	11	58	1.33
20570361--20570564	73	2.8	73	83	5	227	23	21	17	38	1.93
20571266--20571309	22	2.0	22	95	0	79	20	31	0	47	1.50
20576577--20576617	20	2.0	20	95	0	73	41	0	14	43	1.45
20576586--20576635	25	2.0	25	84	7	66	44	0	20	36	1.52
20582259--20582299	20	2.0	20	95	0	73	41	0	14	43	1.45
20582268--20582317	25	2.0	25	84	7	66	44	0	20	36	1.52
20589253--20589356	38	2.7	40	83	8	142	21	34	19	25	1.96
20589467--20589493	2	13.5	2	100	0	54	48	0	0	51	1.00
20590072--20590115	22	2.0	22	86	8	63	31	20	6	40	1.79
20593746--20593804	29	2.0	29	100	0	118	15	6	16	61	1.55
20593971--20594178	73	2.8	73	83	1	247	24	23	15	37	1.93
20602720--20602834	37	3.1	37	92	5	196	28	10	36	24	1.88
20602958--20603061	52	2.0	52	96	0	190	31	22	16	29	1.95
20616145--20616188	2	22.0	2	95	0	79	50	0	2	47	1.13
20617454--20617482	2	15.0	2	92	7	51	48	0	0	51	1.00
20618683--20618727	17	2.6	17	76	13	56	57	4	4	33	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20620944--20621533	255	2.3	252	81	4	670	48	6	11	34	1.64
20624861--20624911	4	12.2	4	76	15	50	0	27	0	72	0.85
20624859--20624897	9	4.3	9	87	9	53	0	25	0	74	0.82
20631791--20631861	35	2.0	35	94	0	124	45	5	25	23	1.75
20632580--20632639	25	2.4	25	91	0	93	25	18	30	26	1.98
20634436--20634551	37	3.2	37	97	1	216	26	12	37	23	1.90
20634738--20634784	22	2.2	22	88	3	69	25	23	23	27	2.00
20637659--20637794	35	4.0	34	76	6	132	34	26	12	26	1.92
20637664--20637794	67	2.0	67	90	3	210	35	26	12	25	1.92
20638438--20638549	56	2.0	56	92	0	188	22	14	16	47	1.82
20639168--20639226	29	2.0	29	100	0	118	50	10	5	33	1.58
20642178--20642260	31	2.7	31	84	0	103	22	25	22	28	1.99
20655818--20655936	37	3.2	37	95	0	211	25	36	10	27	1.88
20656611--20656651	20	2.0	20	95	0	73	43	9	31	14	1.78
20661361--20661810	225	2.0	224	99	0	891	32	25	14	27	1.95
20668157--20668488	68	4.9	68	82	7	349	35	19	9	35	1.85
20669689--20669721	15	2.1	16	94	5	59	66	18	3	12	1.36
20670383--20670546	29	5.6	28	80	9	177	40	8	9	40	1.69
20670383--20670537	59	2.6	59	86	7	201	41	8	10	40	1.69
20670389--20670556	59	2.9	54	82	13	183	42	8	10	38	1.70
20670698--20670730	17	1.9	17	88	11	50	42	3	12	42	1.57
20673726--20673820	28	3.4	28	83	2	120	23	18	22	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20675143--20675182	19	2.2	19	95	4	73	52	0	5	42	1.23
20676655--20676691	19	1.9	19	94	0	65	29	0	27	43	1.55
20676874--20676947	28	2.6	28	87	4	96	31	17	24	27	1.97
20679891--20680064	39	4.5	39	87	2	210	22	12	37	27	1.90
20689081--20689221	29	4.9	28	75	5	120	39	10	11	38	1.76
20689099--20689238	28	4.8	29	75	11	99	40	10	10	38	1.75
20689391--20689423	17	1.9	17	88	11	50	39	3	15	42	1.62
20699575--20699599	13	1.9	13	100	0	50	44	0	8	48	1.32
20703915--20704017	38	2.6	39	84	6	129	20	15	40	23	1.90
20703915--20704020	40	2.7	38	85	5	133	20	15	40	23	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106