genome.fa.s2.2.7.7.80.10.50.1000.48.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  48  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17974457--17974500	15	2.9	15	77	16	54	0	29	2	68	1.02
17974460--17974512	27	2.0	27	85	7	72	0	33	1	64	1.05
17974616--17974717	34	3.0	35	77	9	95	34	31	10	23	1.89
17974660--17974837	68	2.6	68	82	4	214	27	34	10	27	1.89
17974670--17974827	34	4.6	34	77	9	169	25	36	10	28	1.88
17974634--17974837	69	3.0	70	81	3	227	27	34	10	26	1.89
17976735--17976767	2	17.0	2	93	6	59	48	0	0	51	1.00
17981154--17981217	25	2.6	24	85	4	83	10	26	15	46	1.79
17981163--17981217	25	2.2	25	90	3	85	12	27	12	47	1.78
17981232--17981279	15	3.4	15	76	23	50	0	35	2	62	1.07
17981446--17981554	34	3.2	33	75	12	105	29	31	12	26	1.93
17981466--17981577	35	3.2	35	76	7	129	30	28	10	30	1.91
17981436--17981596	69	2.3	69	88	4	245	29	29	13	27	1.94
17981400--17981589	35	5.5	36	70	12	128	32	28	12	26	1.93
17982063--17982101	16	2.4	16	87	8	53	20	2	0	76	0.90
17989752--17989795	20	2.3	19	84	7	54	36	4	13	45	1.64
17991300--17991663	61	6.0	60	81	6	414	23	31	17	27	1.97
17991308--17991664	121	3.0	120	87	4	486	23	31	17	27	1.97
17992251--17992419	67	2.4	68	79	7	180	2	30	4	62	1.26
17992652--17992713	12	5.1	12	73	9	54	0	24	1	74	0.91
18001296--18001333	20	1.9	20	100	0	76	28	5	21	44	1.73
18009695--18009746	27	1.9	27	84	7	70	23	19	21	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18019895--18020102	68	3.1	66	80	8	211	33	19	11	36	1.88
18021040--18021136	50	1.9	50	81	4	115	31	17	9	41	1.81
18024957--18024998	19	2.2	19	95	0	75	16	38	11	33	1.86
18029625--18029892	64	4.2	64	91	0	412	26	29	13	30	1.94
18034530--18034571	2	21.0	2	100	0	84	0	50	0	50	1.00
18036542--18036674	66	2.0	66	98	0	257	30	12	29	27	1.93
18038450--18038558	35	3.1	35	87	6	159	39	4	22	33	1.75
18038450--18038558	34	3.1	34	88	3	155	39	4	22	33	1.75
18038726--18038794	25	2.8	25	77	2	68	44	14	27	13	1.82
18039870--18040094	63	3.6	63	90	1	335	25	17	31	25	1.97
18049201--18049244	2	22.0	2	100	0	88	50	0	0	50	1.00
18058558--18058618	26	2.4	26	80	17	67	8	31	4	55	1.50
18065318--18065342	2	12.5	2	100	0	50	48	0	0	52	1.00
18075564--18075737	73	2.4	74	82	3	219	38	16	21	23	1.93
18088352--18088393	22	1.9	22	90	9	68	52	2	26	19	1.58
18089187--18089351	73	2.2	74	86	3	217	40	16	20	21	1.91
18089187--18089374	73	2.6	72	83	6	209	38	16	21	23	1.92
18091079--18091314	64	3.7	64	83	0	274	36	23	15	25	1.94
18091082--18091314	128	1.8	128	85	0	331	36	23	14	25	1.93
18098842--18098944	38	2.6	39	81	6	120	24	17	37	20	1.93
18106254--18106506	74	3.4	74	76	4	249	38	18	21	22	1.93
18106266--18106502	37	6.4	37	77	4	147	37	17	21	23	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18106266--18106519	111	2.3	111	76	5	262	38	17	21	22	1.93
18106648--18106687	2	20.0	2	84	0	53	52	42	0	5	1.23
18111709--18111873	43	3.8	43	81	7	158	22	33	17	26	1.96
18112710--18112770	23	2.6	23	73	2	59	0	27	1	70	0.97
18112687--18112743	30	2.0	28	83	13	71	1	22	1	73	1.02
18113015--18113111	34	2.8	34	92	1	149	30	23	5	40	1.76
18113015--18113130	35	3.4	34	87	2	151	34	21	4	39	1.73
18113243--18113313	24	3.1	23	67	25	60	12	35	4	47	1.61
18119256--18119384	67	1.9	67	82	3	161	24	15	27	31	1.96
18124045--18124161	42	2.8	42	81	2	128	26	31	17	23	1.97
18124193--18124232	2	20.0	2	100	0	80	50	0	0	50	1.00
18126500--18126538	20	2.0	20	89	0	60	38	2	20	38	1.66
18129080--18129148	29	2.3	29	77	5	75	26	11	17	44	1.82
18133319--18133471	42	3.6	42	83	2	173	25	20	31	22	1.98
18136901--18137110	43	4.9	43	81	6	214	24	33	15	26	1.95
18136899--18137110	86	2.5	85	84	6	261	24	33	15	26	1.95
18137925--18137995	15	4.5	15	73	16	56	0	22	1	76	0.87
18137915--18137964	23	2.1	23	85	3	64	2	14	0	84	0.72
18137919--18137960	19	2.2	20	86	4	59	2	14	0	83	0.75
18138149--18138258	35	3.2	35	84	1	150	33	20	2	43	1.66
18138381--18138443	19	2.8	22	73	21	60	9	33	3	53	1.49
18149618--18149643	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18153502--18153536	17	2.1	16	89	5	52	40	0	0	60	0.97
18156808--18156916	54	2.0	54	82	3	130	9	42	18	30	1.81
18156836--18156908	27	2.7	27	80	0	83	9	42	17	30	1.81
18156836--18156956	54	2.2	54	82	0	134	9	38	22	29	1.85
18156887--18156956	27	2.6	27	77	8	79	8	32	28	30	1.87
18174921--18174977	21	2.6	23	76	18	68	63	12	0	24	1.29
18178214--18178299	36	2.4	36	80	0	91	30	13	25	30	1.94
18178989--18179040	20	2.6	20	93	0	86	32	9	19	38	1.84
18179578--18179609	2	16.0	2	100	0	64	50	0	0	50	1.00
18182604--18182644	19	2.2	19	91	8	66	73	2	24	0	0.96
18182634--18182665	13	2.4	14	94	5	57	71	0	21	6	1.07
18182799--18182840	16	2.5	17	88	11	61	69	0	30	0	0.89
18182806--18182837	12	2.6	12	95	5	55	68	0	31	0	0.90
18182905--18182948	23	2.0	22	86	13	63	65	0	34	0	0.93
18182989--18183019	16	1.9	16	100	0	62	80	0	19	0	0.71
18183046--18183104	16	3.9	14	75	18	55	66	0	33	0	0.92
18183055--18183104	12	4.6	12	76	18	56	66	0	34	0	0.92
18183771--18184129	60	5.9	60	84	1	423	27	15	30	25	1.96
18183771--18184129	121	3.0	121	86	2	456	27	15	30	25	1.96
18190374--18190416	22	1.9	23	86	13	63	62	0	37	0	0.95
18191237--18191401	61	2.7	60	88	0	231	26	18	30	24	1.97
18191237--18191413	60	2.9	60	87	2	230	26	17	31	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18208539--18208653	37	3.1	37	93	2	196	30	10	34	24	1.89
18217451--18217571	47	2.6	47	93	0	197	14	30	21	33	1.94
18228036--18228065	12	2.5	12	94	0	51	16	0	0	83	0.65
18228051--18228092	19	2.1	21	87	12	63	21	2	0	76	0.90
18228045--18228113	19	3.6	19	71	19	54	23	1	0	75	0.89
18228037--18228113	23	3.3	23	74	23	72	23	1	0	75	0.88
18234960--18235049	43	2.1	43	85	0	117	22	17	37	22	1.94
18238215--18238426	97	2.2	96	85	8	288	33	16	16	32	1.92
18241820--18241859	21	2.0	20	90	5	62	42	5	27	25	1.75
18243547--18243579	2	17.0	2	93	6	59	48	0	0	51	1.00
18244763--18244840	30	2.6	30	83	0	93	47	5	42	5	1.47
18248774--18248802	12	2.3	13	94	5	51	65	0	0	34	0.93
18249176--18249216	20	2.0	20	95	0	73	43	14	0	41	1.45
18252693--18252729	18	2.1	18	89	0	56	48	16	8	27	1.74
18255545--18255706	43	3.8	43	88	1	218	22	19	37	21	1.95
18255708--18255765	20	3.0	20	89	2	82	25	3	39	31	1.73
18265588--18265695	43	2.5	43	81	4	128	25	18	35	21	1.96
18265819--18265881	2	31.0	2	93	3	108	49	1	1	47	1.20
18269622--18269658	19	1.9	19	89	10	58	2	24	2	70	1.14
18270679--18270777	35	2.8	35	92	0	153	27	11	32	29	1.91
18270830--18270871	21	2.0	21	95	4	77	38	4	14	42	1.66
18287037--18287194	81	2.0	81	87	2	228	32	19	16	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18301372--18301407	13	2.7	13	86	4	54	0	16	0	83	0.65
18301376--18301401	11	2.4	11	100	0	52	0	11	0	88	0.52
18301363--18301414	13	3.8	13	77	10	50	1	17	0	80	0.80
18301428--18301462	10	3.5	10	92	0	52	0	17	0	82	0.66
18301627--18301697	18	3.8	18	71	10	54	4	26	0	69	1.07
18301779--18301821	18	2.4	18	84	0	59	4	20	0	74	1.00
18302687--18302725	16	2.4	16	82	0	51	51	5	23	20	1.67
18311641--18311705	23	2.8	23	90	0	103	33	15	26	24	1.95
18312068--18312104	19	1.9	19	94	0	65	18	10	35	35	1.86
18312087--18312143	29	2.0	29	89	0	87	22	12	35	29	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106