genome.fa.s2.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  14  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6649447--6649637	27	7.0	27	74	2	148	42	12	7	37	1.71
6649447--6649638	55	3.5	54	79	1	186	42	12	7	37	1.72
6652359--6652407	4	12.2	4	91	0	71	44	0	6	48	1.27
6652359--6652407	6	8.2	6	90	0	71	44	0	6	48	1.27
6652359--6652407	10	4.9	10	92	0	71	44	0	6	48	1.27
6657100--6657167	15	4.5	15	71	22	52	26	0	11	61	1.30
6657086--6657171	45	2.0	44	82	13	106	25	0	12	61	1.31
6658667--6658700	12	2.8	12	90	0	50	52	0	0	47	1.00
6659031--6659056	2	13.0	2	100	0	52	50	0	0	50	1.00
6667630--6667672	23	2.0	21	81	9	50	37	4	6	51	1.50
6668062--6668093	15	2.1	15	94	0	55	68	0	0	31	0.90
6668168--6668254	33	2.6	32	83	7	93	68	1	3	26	1.12
6668198--6668266	33	2.3	28	71	21	66	66	2	5	24	1.27
6668474--6668514	15	2.7	15	84	0	55	41	19	0	39	1.52
6675938--6675977	20	2.0	20	95	0	71	30	2	30	37	1.71
6690720--6691174	137	3.3	137	83	3	581	31	11	7	49	1.67
6691348--6691382	18	1.9	18	88	11	54	65	2	11	20	1.37
6694422--6694489	22	3.1	22	81	12	70	42	0	5	51	1.26
6694956--6695039	24	3.7	23	73	9	64	34	16	17	30	1.93
6694957--6695077	45	2.7	45	85	0	170	35	15	17	31	1.91
6695056--6695129	24	3.1	24	82	0	94	39	22	17	20	1.92
6695138--6695287	29	5.3	28	71	20	91	39	14	13	33	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6695488--6695680	97	2.0	95	97	2	368	38	13	11	36	1.81
6697861--6697901	13	3.2	13	89	6	57	68	7	2	21	1.26
6697866--6697903	13	3.0	13	92	3	60	71	10	0	18	1.14
6698337--6698602	69	3.9	69	89	2	372	21	11	36	30	1.89
6698347--6698599	34	7.4	34	77	9	244	21	11	35	30	1.90
6699688--6699727	11	3.3	13	76	16	50	82	0	0	17	0.67
6713872--6713907	2	18.0	2	100	0	72	50	0	0	50	1.00
6715271--6715332	8	7.6	8	74	15	56	46	0	0	53	1.00
6715267--6715329	18	3.8	17	71	14	60	49	0	0	50	1.00
6724012--6724111	30	3.3	29	87	5	137	40	0	2	58	1.10
6737272--6737347	14	5.3	14	70	17	66	48	7	27	15	1.73
6737272--6737348	29	2.7	29	93	0	127	49	7	27	15	1.72
6737541--6737625	35	2.4	35	78	7	109	20	18	20	41	1.91
6737597--6737677	35	2.3	35	82	4	92	20	19	18	40	1.91
6737618--6737684	35	1.9	35	90	0	107	20	17	17	43	1.88
6743157--6743182	4	6.5	4	100	0	52	0	0	26	73	0.84
6744837--6744897	2	31.0	2	95	3	106	50	0	0	47	1.01
6749527--6749673	74	2.0	73	100	0	285	42	10	10	35	1.75
6750247--6750275	12	2.4	12	100	0	58	27	17	0	55	1.42
6781324--6781417	44	2.1	44	94	2	161	48	8	17	25	1.74
6783002--6783048	2	23.5	2	100	0	94	51	0	0	48	1.00
6783918--6783968	25	2.0	25	84	0	66	35	7	21	35	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6800540--6800674	67	2.0	67	100	0	270	41	13	17	28	1.86
6802990--6803050	31	2.0	30	90	3	95	37	4	1	55	1.31
6803092--6803141	22	2.3	22	92	0	82	48	4	2	46	1.32
6810148--6810192	21	2.1	22	87	4	65	22	6	26	44	1.77
6814462--6814592	66	2.0	66	96	0	244	32	11	21	35	1.89
6815158--6815199	17	2.4	18	81	14	52	4	11	0	83	0.79
6822184--6822229	19	2.4	20	82	7	60	26	17	17	39	1.91
6827615--6827663	16	3.0	17	74	17	50	36	6	10	46	1.63
6828102--6828186	41	2.1	40	95	2	152	25	3	21	48	1.66
6833136--6833197	19	3.2	20	86	11	76	22	1	0	75	0.88
6833134--6833197	23	2.8	23	86	9	78	21	1	0	76	0.87
6835055--6835090	15	2.4	15	90	0	54	80	0	16	2	0.83
6852988--6853018	7	4.4	7	95	0	53	25	22	3	48	1.66
6853373--6853436	30	2.2	29	83	8	76	35	3	1	59	1.23
6855497--6855529	16	2.0	17	94	5	59	33	0	0	66	0.92
6855669--6855756	41	2.3	38	88	7	124	40	14	4	39	1.67
6858531--6858601	33	2.1	34	84	2	90	47	4	21	26	1.68
6871676--6871709	3	11.0	3	93	6	59	32	0	0	67	0.91
6871677--6871727	9	5.2	10	90	7	52	25	0	1	72	0.95
6875151--6875181	16	1.9	16	93	0	53	48	0	3	48	1.17
6875251--6875281	16	2.0	15	93	6	53	74	0	0	25	0.82
6875649--6875693	15	2.9	15	86	3	54	60	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6875731--6875782	21	2.5	21	72	12	52	67	3	0	28	1.08
6877473--6877558	28	3.0	28	78	11	93	31	3	4	60	1.34
6878707--6878838	22	6.3	21	67	18	78	43	1	0	54	1.15
6878727--6878804	40	1.9	41	84	7	106	42	2	0	55	1.13
6878749--6878791	15	2.9	14	80	10	50	41	2	0	55	1.12
6878865--6878942	23	3.4	23	77	13	72	50	3	1	44	1.28
6878904--6878977	24	2.9	24	79	18	71	45	2	1	50	1.24
6883269--6883320	27	1.9	27	88	0	77	46	3	3	46	1.39
6884108--6884148	2	20.5	2	84	0	55	51	7	0	41	1.30
6894677--6894747	16	4.2	17	75	7	74	30	0	0	69	0.89
6900752--6900784	7	4.7	7	100	0	66	0	84	0	15	0.61
6903394--6903467	34	2.3	34	81	6	91	27	1	12	59	1.41
6904103--6904207	51	2.1	51	87	0	147	50	6	3	39	1.47
6904372--6904415	11	3.8	11	80	11	52	84	2	13	0	0.73
6904442--6904485	23	2.0	23	90	4	72	81	0	15	2	0.78
6904338--6904500	70	2.4	67	80	15	201	65	1	17	15	1.37
6909415--6909471	12	4.1	14	80	10	64	73	0	1	24	0.92
6914541--6914747	84	2.5	84	80	5	204	41	8	10	40	1.69
6916373--6916466	37	2.8	31	75	17	98	32	5	53	8	1.54
6916390--6916483	37	2.6	35	78	6	107	31	5	52	10	1.58
6916368--6916490	33	3.5	37	72	25	113	31	4	52	10	1.57
6927859--6927963	38	2.7	40	83	4	126	23	40	15	20	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6930658--6930826	68	2.5	68	85	1	214	34	17	8	39	1.80
6930824--6930963	68	2.1	67	85	4	183	35	15	8	40	1.78
6932068--6932098	16	1.9	16	93	0	53	67	16	3	12	1.35
6934605--6934652	24	2.0	24	87	0	69	39	4	31	25	1.74
6940187--6940227	21	2.0	21	90	0	64	41	9	19	29	1.83
6940659--6940735	27	2.9	27	94	0	127	33	23	16	25	1.96
6952852--6952899	23	2.1	23	88	0	69	16	27	14	41	1.87
6953355--6953389	18	1.9	18	88	0	52	11	37	17	34	1.85
6958149--6958192	23	1.9	23	95	0	79	15	20	15	47	1.82
6959266--6959290	13	1.9	13	100	0	50	92	0	8	0	0.40
6961260--6961289	2	15.0	2	100	0	60	0	50	0	50	1.00
6961289--6961323	2	17.5	2	100	0	70	48	0	0	51	1.00
6962919--6963057	56	2.5	56	90	0	224	28	10	14	46	1.78
6963020--6963100	40	2.0	40	90	0	126	38	7	16	38	1.76
6963082--6963288	101	2.0	103	86	6	287	33	15	8	41	1.78
6963266--6963449	75	2.4	75	87	4	244	37	19	8	35	1.81
6964067--6964225	78	2.0	78	95	0	282	42	20	8	28	1.81
6972345--6972381	19	1.9	19	94	0	65	18	2	18	59	1.50
6974013--6974064	26	2.0	26	96	0	95	32	23	21	23	1.98
6982629--6983152	261	2.0	261	89	0	798	30	21	23	24	1.99
6989334--6989375	2	21.5	2	90	4	68	45	0	2	52	1.13
7012656--7012700	21	2.1	21	83	4	54	35	17	20	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7012822--7012860	2	20.0	2	94	5	71	51	0	0	48	1.00
7013020--7013146	43	3.0	43	90	2	202	24	37	16	22	1.94
7013104--7013279	88	2.0	88	88	2	264	39	27	11	22	1.88
7014679--7014742	33	1.9	33	84	6	85	45	1	0	53	1.10
7019715--7019786	22	3.5	21	71	21	62	25	23	22	29	1.99
7019715--7019791	40	1.9	40	86	5	111	25	23	20	29	1.99
7020064--7020242	88	2.0	88	93	0	304	36	26	12	24	1.91
7022182--7022263	22	3.8	22	86	3	112	23	13	21	41	1.88
7022296--7022357	23	2.7	23	77	5	72	38	27	11	22	1.88
7022350--7022401	23	2.3	22	86	3	68	36	34	9	19	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106