genome.fa.s2.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  10  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4829420--4829521	24	4.2	24	66	24	61	37	3	57	0	1.24
4839928--4839983	25	2.2	25	87	3	76	39	1	57	1	1.20
4842664--4842723	27	2.3	27	80	8	70	28	0	6	65	1.18
4842859--4842905	24	2.0	23	84	12	60	40	14	4	40	1.66
4844952--4844998	22	2.1	23	92	4	78	21	23	8	46	1.78
4855903--4856227	173	1.9	172	87	1	472	32	20	13	33	1.91
4865598--4865627	12	2.4	13	94	5	53	0	13	0	86	0.57
4869640--4869753	2	61.0	2	74	19	95	47	3	1	46	1.30
4873781--4873847	5	12.8	5	73	9	53	71	0	4	23	1.04
4873832--4873934	45	2.5	39	75	18	100	59	0	1	38	1.09
4874026--4874215	33	5.3	33	66	19	105	45	0	1	52	1.14
4874038--4874224	26	7.6	26	68	19	98	45	1	1	51	1.17
4873999--4874303	146	2.1	145	88	3	452	45	1	1	51	1.22
4875933--4875963	14	2.2	14	94	0	53	25	3	16	54	1.56
4877659--4877716	31	2.0	29	87	12	84	51	0	0	48	1.00
4879305--4879341	7	5.3	7	100	0	74	29	0	0	70	0.88
4880441--4880508	29	2.3	29	89	0	109	8	42	10	38	1.70
4880954--4880995	19	2.3	19	84	8	52	21	0	4	73	1.01
4888273--4888350	39	2.0	39	100	0	156	20	23	12	43	1.86
4929032--4929081	22	2.3	22	82	6	57	50	2	0	48	1.12
4941907--4941958	21	2.5	21	96	3	97	34	5	28	30	1.81
4942549--4942622	31	2.4	31	79	6	78	60	2	0	36	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4953235--4953273	19	2.1	18	90	4	60	41	17	15	25	1.89
4958890--4958925	4	9.0	4	100	0	72	25	0	25	50	1.50
4965610--4965670	32	2.0	30	87	6	86	52	1	0	45	1.10
4965611--4965682	32	2.3	31	81	6	83	55	1	0	43	1.08
4966364--4966439	29	2.6	28	79	4	89	52	11	19	15	1.73
4966663--4966753	35	2.6	35	83	0	119	20	13	18	47	1.82
4966728--4966805	26	3.0	26	100	0	156	23	19	19	38	1.93
4967841--4967992	76	2.0	75	90	1	241	25	13	15	46	1.81
4974430--4974676	101	2.4	100	83	4	307	43	14	19	22	1.87
4975772--4975847	29	2.6	28	83	4	89	48	9	26	15	1.75
4976071--4976239	35	4.8	35	85	1	151	21	16	18	43	1.88
4976071--4976239	70	2.4	70	82	2	196	21	16	18	43	1.88
4978238--4978267	7	4.1	7	91	8	51	70	0	13	16	1.18
4978203--4978257	25	2.2	25	83	6	67	72	3	5	18	1.18
4991054--4991100	2	23.5	2	100	0	94	51	0	0	48	1.00
4994336--4994399	25	2.6	25	97	0	119	40	12	7	39	1.72
4994966--4995068	32	3.5	28	75	15	75	37	2	2	56	1.29
5004150--5004210	29	2.2	27	91	5	95	57	6	0	36	1.25
5005793--5005840	2	25.5	2	87	12	75	50	0	0	50	1.00
5005576--5006042	252	1.9	251	99	0	916	41	16	6	35	1.75
5007054--5007207	48	3.2	48	65	17	120	17	24	6	51	1.68
5006956--5007248	96	3.1	96	93	2	493	21	25	4	48	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5010242--5010598	119	3.0	119	94	0	624	28	16	31	22	1.96
5010883--5010911	5	6.0	5	92	8	51	58	0	0	41	0.98
5010883--5010911	9	3.0	10	90	10	51	58	0	0	41	0.98
5010885--5010911	14	1.9	14	100	0	54	59	0	0	40	0.98
5013081--5013121	21	2.0	21	85	0	55	29	21	26	21	1.99
5024755--5024801	24	2.0	24	83	8	60	59	0	0	40	0.97
5024977--5025024	2	25.0	2	87	8	73	52	0	0	47	1.00
5024977--5025030	19	2.8	20	89	10	87	50	0	0	50	1.00
5029808--5029860	27	1.9	28	88	3	81	60	13	11	15	1.59
5033250--5033326	32	2.4	32	95	0	136	29	12	25	31	1.93
5039602--5039760	80	2.0	79	92	2	255	30	3	3	62	1.26
5039706--5039787	33	2.5	33	87	2	110	28	1	2	68	1.10
5045314--5045375	29	2.1	28	82	11	72	43	3	0	53	1.17
5046189--5046239	26	1.9	27	84	11	70	31	1	5	60	1.31
5046210--5046248	16	2.5	15	80	19	53	33	0	5	61	1.18
5046185--5046290	25	4.2	25	72	20	71	31	0	4	63	1.21
5046230--5046272	20	2.2	20	91	0	68	27	0	4	67	1.10
5046241--5046286	20	2.2	20	88	3	65	26	0	4	69	1.07
5046634--5046687	26	2.2	23	76	17	63	37	1	20	40	1.63
5047697--5047736	21	1.9	21	89	0	62	42	5	2	50	1.37
5057579--5057640	31	2.0	31	90	0	97	20	19	19	40	1.92
5061181--5061218	20	1.9	20	88	0	58	23	2	0	73	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5063364--5063399	2	18.0	2	88	0	54	0	44	0	55	0.99
5063668--5063705	19	2.0	20	85	15	53	52	0	2	44	1.14
5064547--5064613	26	2.6	27	80	4	75	38	4	1	55	1.29
5064872--5064966	30	3.2	30	83	1	129	61	3	0	35	1.12
5065844--5065881	16	2.3	17	90	4	60	44	2	0	52	1.14
5065846--5065888	15	2.8	15	82	3	50	55	2	0	41	1.12
5066682--5066742	31	2.0	31	90	0	95	55	4	4	34	1.43
5066912--5066955	22	1.9	23	90	9	72	65	0	0	34	0.93
5067680--5068000	171	1.9	170	94	1	563	17	15	19	46	1.83
5071173--5071217	23	2.0	23	95	0	81	37	11	11	40	1.76
5071568--5071606	20	1.9	21	84	5	53	53	2	15	28	1.55
5075007--5075034	2	14.0	2	100	0	56	50	0	0	50	1.00
5076784--5076843	26	2.4	25	83	8	68	56	5	3	35	1.37
5078506--5078710	99	2.1	99	91	0	329	39	9	6	44	1.63
5078605--5079067	119	3.9	119	81	3	579	37	8	8	45	1.65
5078976--5079166	99	1.9	99	87	4	278	35	6	9	48	1.62
5079069--5079518	119	3.8	118	78	6	536	36	7	9	46	1.65
5079421--5079611	99	1.9	99	95	0	346	35	8	8	46	1.67
5079428--5079644	99	2.2	98	83	7	244	35	9	8	46	1.67
5079520--5079861	122	2.9	118	84	3	416	36	7	9	47	1.62
5079757--5079976	97	2.2	99	90	3	338	40	6	8	45	1.61
5079855--5080435	119	4.9	119	87	1	763	37	7	8	46	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5079855--5080998	238	5.0	238	78	10	1293	37	7	8	46	1.63
5078724--5080979	573	4.0	571	85	7	2745	36	7	8	46	1.64
5078605--5080998	672	3.5	671	83	8	2945	36	7	8	46	1.64
5080330--5080631	98	3.1	99	93	1	500	38	7	7	46	1.61
5080527--5080998	119	3.9	119	84	3	635	37	7	8	46	1.63
5080528--5080998	239	2.0	239	86	4	664	37	7	8	46	1.63
5082367--5082825	119	3.8	118	82	2	551	38	9	7	45	1.65
5083923--5083974	23	2.4	21	74	6	50	57	5	9	26	1.53
5103516--5103555	20	2.0	20	95	0	71	52	10	0	37	1.35
5116474--5116525	26	2.0	26	96	0	95	19	15	32	32	1.93
5134900--5134976	40	1.9	40	84	5	102	25	20	24	28	1.99
5175428--5175462	18	2.0	18	88	5	54	5	2	2	88	0.68
5175874--5175946	29	2.5	30	84	2	94	31	5	5	57	1.44
5176229--5176293	21	2.8	22	73	21	62	56	0	3	40	1.15
5180475--5180520	23	2.0	23	82	0	56	8	26	13	52	1.69
5180952--5181073	46	2.7	44	81	8	138	34	16	15	33	1.90
5181045--5181099	21	2.6	21	82	5	67	41	21	14	21	1.89
5192898--5192959	30	2.1	30	100	0	124	32	9	19	38	1.84
5199825--5199860	17	2.1	18	89	5	56	38	2	16	41	1.63
5200534--5200613	26	3.1	26	72	16	85	47	8	11	32	1.70
5203607--5203643	18	2.1	18	94	0	65	56	0	18	24	1.41
5205050--5205668	209	2.9	209	86	4	848	46	4	7	40	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5205044--5205649	214	2.9	210	87	2	867	46	4	7	40	1.55
5205584--5205631	22	2.2	23	81	7	64	47	0	8	43	1.33
5205582--5205644	23	2.9	21	77	13	65	47	0	7	44	1.32
5205822--5205857	14	2.6	14	95	0	63	58	0	0	41	0.98
5205825--5205874	14	3.4	15	86	10	52	56	2	0	42	1.11
5208444--5208503	14	4.6	13	75	19	54	46	1	1	50	1.21
5208415--5208508	27	3.5	27	73	15	70	39	1	1	58	1.12
5208614--5208652	20	2.1	19	86	13	55	51	0	0	48	1.00
5208630--5208715	29	2.9	29	70	5	75	59	2	3	34	1.27
5231351--5231441	33	2.8	31	79	11	94	30	2	0	67	1.03

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106