genome.fa.s2.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  13  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6301641--6301855	55	3.9	54	78	5	182	41	14	8	34	1.78
6301675--6301917	55	4.4	54	78	10	208	40	14	9	36	1.78
6301641--6301917	110	2.5	111	75	5	258	41	14	9	35	1.77
6301749--6301993	134	1.8	137	82	4	318	39	12	9	37	1.77
6303566--6303604	16	2.4	17	83	8	55	51	5	0	43	1.24
6317720--6317836	61	1.9	59	98	1	216	15	25	11	46	1.80
6321297--6321336	14	2.6	16	80	11	57	37	0	7	55	1.29
6321897--6321934	19	2.0	19	90	10	60	71	0	0	28	0.87
6322036--6322089	20	2.7	20	82	8	65	57	0	0	42	0.98
6322994--6323026	17	1.9	17	88	11	50	6	9	6	78	1.08
6332203--6332304	23	4.4	23	84	0	123	21	10	28	39	1.87
6332362--6332439	23	3.5	22	75	7	68	29	11	20	38	1.88
6336317--6336472	55	2.8	55	87	1	213	25	33	17	24	1.96
6337323--6337352	3	10.0	3	92	0	51	66	0	30	3	1.07
6338646--6338702	22	2.6	22	83	5	62	52	21	7	19	1.69
6338852--6338924	22	3.5	22	85	5	89	49	27	5	17	1.69
6339086--6339151	22	3.0	22	88	0	105	40	24	6	28	1.79
6339953--6340007	22	2.5	22	93	0	92	38	32	12	16	1.86
6353523--6353564	21	1.9	23	85	9	61	52	2	0	45	1.13
6353664--6353777	47	2.5	46	78	7	124	45	7	1	45	1.40
6353859--6353933	11	7.5	10	74	15	57	52	1	1	45	1.17
6353882--6353935	18	2.9	18	76	15	56	50	1	1	46	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6354300--6354332	13	2.4	14	90	5	50	3	15	0	81	0.80
6358310--6358341	16	1.9	17	93	6	57	50	3	21	25	1.64
6358722--6358796	30	2.5	30	81	12	84	62	1	4	32	1.22
6378921--6378950	2	15.5	2	93	6	53	53	0	0	46	1.00
6382061--6382165	2	54.0	2	86	9	137	48	1	1	46	1.24
6383076--6383111	2	18.0	2	88	0	54	44	0	5	50	1.25
6396310--6396630	32	10.1	32	69	18	143	4	45	20	29	1.71
6396310--6396689	127	3.0	127	93	0	634	5	44	19	31	1.72
6396853--6396884	15	2.2	14	94	5	55	12	15	0	71	1.14
6396853--6396884	7	4.4	7	92	7	55	12	15	0	71	1.14
6401560--6401590	12	2.6	12	94	0	53	74	0	3	22	0.96
6402110--6402135	2	13.0	2	100	0	52	50	0	0	50	1.00
6405790--6405827	2	19.0	2	100	0	76	50	0	0	50	1.00
6410101--6410125	13	1.9	13	100	0	50	48	8	0	44	1.32
6413568--6413913	89	3.9	89	83	0	431	26	16	34	23	1.95
6414899--6414947	2	24.5	2	91	0	80	44	0	0	55	0.99
6415534--6416091	223	2.5	223	88	4	799	36	12	17	34	1.87
6416719--6420498	856	4.5	862	86	5	4923	32	14	18	35	1.90
6421338--6421394	24	2.4	24	74	25	59	26	5	0	68	1.11
6421357--6421423	30	2.1	32	84	13	86	22	8	0	68	1.17
6421655--6421679	11	2.3	11	100	0	50	24	0	0	76	0.80
6424347--6424501	73	2.1	74	87	3	224	18	13	16	50	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6424697--6424749	27	2.0	27	81	7	63	26	15	18	39	1.90
6430806--6430849	2	22.5	2	86	4	63	45	0	0	54	0.99
6435397--6435453	10	5.8	10	75	19	57	56	0	0	43	0.99
6435404--6435455	20	2.7	20	80	14	72	59	0	0	40	0.97
6435396--6435492	9	9.5	10	68	22	51	51	1	2	45	1.19
6435405--6435494	29	2.9	31	85	9	105	53	1	2	43	1.20
6435473--6435547	34	2.2	34	83	9	91	52	1	4	42	1.28
6449623--6449670	19	2.6	18	78	12	53	64	4	0	31	1.12
6452046--6452118	33	2.2	34	80	7	87	38	17	5	38	1.73
6457313--6457391	22	3.5	22	74	14	72	50	0	1	48	1.08
6457357--6457394	17	2.3	17	95	4	69	50	0	0	50	1.00
6457318--6457402	22	3.8	22	72	15	68	51	0	1	47	1.08
6457394--6457430	18	2.1	17	95	5	65	56	0	0	43	0.99
6457799--6457849	26	1.9	27	84	4	68	60	0	3	35	1.15
6458381--6458489	30	3.8	30	76	15	122	59	1	0	37	1.14
6467174--6467203	6	5.0	6	95	0	51	16	63	16	3	1.44
6468675--6468795	27	4.5	27	88	2	163	40	12	14	32	1.84
6471918--6471955	16	2.4	16	90	0	58	34	23	13	28	1.92
6473061--6473097	19	1.9	19	94	0	65	24	21	16	37	1.93
6480424--6480957	266	2.0	266	96	0	978	28	21	13	36	1.92
6483760--6483793	17	2.0	17	88	11	52	52	5	11	29	1.61
6492311--6492337	2	13.5	2	100	0	54	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6522315--6522687	185	2.0	184	95	0	674	35	17	16	30	1.92
6536223--6536289	35	1.9	35	93	0	116	25	16	13	44	1.84
6538667--6538792	36	3.5	36	91	2	191	32	24	22	20	1.98
6538653--6538848	36	5.4	36	86	2	180	31	25	23	20	1.98
6538746--6538933	36	5.2	36	82	5	193	29	21	25	23	1.99
6545549--6545590	21	2.0	21	95	0	75	30	16	9	42	1.80
6547168--6547193	4	6.5	4	100	0	52	26	0	23	50	1.50
6549470--6549515	15	3.1	15	93	0	74	26	36	2	34	1.69
6553655--6553709	23	2.4	23	100	0	110	40	7	16	36	1.76
6555301--6555340	21	1.9	21	85	10	55	35	22	15	27	1.94
6565235--6565282	24	2.0	24	83	0	60	47	16	8	27	1.75
6565190--6565448	69	3.8	69	79	2	252	38	15	17	28	1.90
6565290--6565351	24	2.6	24	84	0	79	37	16	17	29	1.92
6565367--6565420	24	2.2	25	77	9	67	42	20	14	22	1.88
6565392--6565549	45	3.5	45	85	0	217	32	18	24	24	1.97
6565175--6565448	138	2.0	138	82	2	336	37	14	17	29	1.90
6566001--6566029	9	3.0	10	90	10	51	62	0	0	37	0.96
6598202--6599534	681	2.0	681	90	1	2019	35	12	17	34	1.87
6601954--6601983	2	15.0	2	100	0	60	50	0	0	50	1.00
6608360--6608412	13	3.9	13	73	9	52	58	1	0	39	1.09
6608357--6608389	14	2.3	15	89	5	50	60	3	0	36	1.12
6608391--6608467	37	2.1	37	85	11	104	51	1	0	46	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6608443--6608484	15	2.7	16	88	3	59	52	0	0	47	1.00
6608769--6608815	17	2.6	18	80	6	51	53	2	0	44	1.12
6608558--6608841	153	1.8	152	82	8	353	53	3	1	41	1.27
6608813--6609046	129	1.8	130	79	6	278	50	2	2	43	1.33
6609044--6609099	16	3.6	16	87	4	78	46	0	0	53	1.00
6609032--6609125	21	4.4	21	69	7	64	51	1	0	47	1.07
6615981--6616039	30	1.9	30	83	10	75	50	3	8	37	1.49
6616383--6616409	6	4.5	6	100	0	54	0	70	0	29	0.88
6632250--6632362	18	6.8	17	69	15	60	29	29	21	20	1.98
6632241--6632347	51	2.1	51	92	0	178	30	28	21	19	1.98
6632283--6632596	33	9.3	33	78	7	301	30	26	21	21	1.98
6632271--6632599	69	4.9	69	81	7	352	31	27	20	20	1.98
6632249--6632557	51	6.1	49	70	11	155	30	27	22	20	1.98
6632394--6632572	18	10.4	18	70	10	133	30	27	20	21	1.98
6633903--6634017	49	2.3	49	77	12	121	29	7	8	53	1.59
6636376--6636536	33	4.9	33	85	0	214	27	29	19	24	1.98
6636391--6636502	15	6.8	17	66	15	65	27	29	17	25	1.98
6636370--6636536	66	2.5	66	90	0	253	28	28	19	23	1.99
6636377--6636561	99	1.9	99	83	2	246	28	27	19	24	1.99
6636568--6636673	51	2.1	50	84	5	133	27	28	20	23	1.99
6636587--6636673	18	5.1	18	71	9	65	25	28	21	24	1.99
6636625--6636683	15	3.7	15	78	12	64	25	27	23	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6636655--6636976	66	4.9	66	91	0	455	29	30	21	18	1.97
6636463--6636751	150	1.9	150	82	1	364	29	26	20	24	1.99
6636397--6636818	216	2.0	216	81	3	501	28	27	20	23	1.99
6636610--6636902	33	8.9	33	69	6	155	28	29	21	20	1.98
6640372--6640449	33	2.4	33	88	0	111	37	25	25	11	1.90
6641969--6642002	17	2.0	17	88	11	52	44	14	0	41	1.45
6643225--6643266	18	2.5	17	81	11	52	35	28	19	16	1.93
6643429--6643462	2	17.0	2	100	0	68	50	0	0	50	1.00
6643509--6643540	2	16.0	2	100	0	64	50	0	0	50	1.00
6645538--6645567	13	2.3	13	94	0	51	76	0	0	23	0.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106