genome.fa.s2.2.7.7.80.10.50.1000.44.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  44  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16664787--16664948	42	3.8	42	84	4	191	27	16	33	22	1.96
16664975--16665015	2	20.5	2	100	0	82	51	0	0	48	1.00
16665073--16665107	2	17.5	2	100	0	70	51	0	0	48	1.00
16671659--16671761	38	2.6	40	80	3	120	21	16	39	22	1.92
16673788--16674143	189	1.9	189	91	1	588	25	21	35	18	1.95
16674209--16674268	14	4.6	14	74	19	67	0	31	0	68	0.90
16674209--16674269	7	8.4	7	73	20	54	0	31	0	68	0.89
16674212--16674271	22	2.7	23	87	7	81	0	31	0	68	0.90
16674552--16674584	5	6.8	5	86	6	50	3	15	0	81	0.80
16681258--16681396	36	3.7	38	76	11	117	20	38	20	20	1.94
16682615--16682772	42	3.7	43	86	3	221	22	34	18	24	1.96
16685025--16685071	20	2.4	19	76	13	51	48	6	29	14	1.69
16686681--16686785	35	3.2	33	71	20	101	34	27	13	24	1.93
16686633--16686785	67	2.3	68	86	1	200	35	26	12	26	1.92
16686662--16686822	68	2.4	66	82	6	189	37	26	11	24	1.89
16690020--16690114	40	2.4	39	86	6	131	22	42	15	20	1.89
16692468--16692542	40	1.9	40	89	5	118	20	16	38	25	1.92
16692515--16692675	54	3.0	54	90	0	241	19	13	43	23	1.86
16711274--16711359	31	2.7	31	78	3	82	34	34	6	23	1.82
16711309--16711372	32	2.0	32	87	0	92	34	34	6	25	1.81
16719696--16719787	4	23.0	4	84	0	94	43	4	6	45	1.49
16719705--16719768	10	6.6	10	75	7	51	43	6	6	43	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16719701--16719786	14	6.7	14	76	15	80	43	4	6	45	1.51
16719697--16719787	18	5.5	17	78	12	93	43	4	6	45	1.50
16723087--16723162	20	3.8	19	79	11	64	28	15	19	35	1.93
16724162--16724186	13	1.9	13	100	0	50	44	0	16	40	1.47
16728446--16728499	27	2.0	27	100	0	108	37	7	11	44	1.68
16730844--16730955	57	2.0	57	94	0	197	26	16	14	42	1.86
16732980--16733010	13	2.3	14	94	5	55	16	0	3	80	0.83
16745221--16745259	15	2.5	15	83	4	51	53	0	30	15	1.42
16750809--16750863	20	2.8	20	82	0	74	40	14	16	29	1.88
16751824--16751882	2	29.0	2	89	3	82	47	3	1	47	1.29
16752120--16752212	2	46.5	2	93	0	150	46	0	1	49	1.09
16765724--16765794	36	2.0	36	86	5	99	28	11	26	33	1.91
16768247--16768348	50	2.0	50	100	0	204	36	16	21	25	1.94
16769785--16769830	17	2.6	17	86	6	65	34	8	0	56	1.30
16771061--16771098	19	2.0	19	100	0	76	42	31	0	26	1.56
16772268--16772311	21	2.1	21	100	0	88	38	11	9	40	1.73
16781157--16781259	38	2.6	40	83	3	129	25	16	34	23	1.95
16787578--16787632	14	3.9	14	78	4	65	0	30	0	69	0.89
16790462--16790667	28	7.2	28	89	3	286	36	13	11	38	1.81
16790462--16790669	57	3.6	57	87	2	292	36	13	11	38	1.81
16792120--16792298	54	3.3	54	92	0	304	27	41	13	16	1.87
16792198--16792284	24	3.4	24	67	27	70	27	42	14	14	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16804978--16805014	19	1.9	19	94	0	65	21	18	27	32	1.97
16805204--16805280	30	2.6	30	89	0	109	32	24	19	23	1.97
16854233--16854396	36	4.6	35	82	9	172	26	36	14	22	1.93
16854233--16854374	69	2.1	69	85	5	189	27	35	13	23	1.92
16856515--16856540	10	2.6	10	100	0	52	42	0	7	50	1.31
16856586--16856703	42	2.8	42	88	0	173	22	33	21	22	1.98
16859675--16859720	19	2.4	20	82	10	60	54	0	2	43	1.12
16861534--16861558	13	1.9	13	100	0	50	44	0	8	48	1.32
16863728--16863838	43	2.6	43	85	2	152	27	20	33	18	1.96
16863730--16863851	43	2.8	43	82	2	147	27	18	34	18	1.95
16864231--16864314	39	2.2	39	88	0	123	26	21	17	34	1.96
16877434--16877492	5	11.6	5	85	3	64	35	1	3	59	1.24
16888101--16888138	19	2.1	18	90	5	58	13	34	10	42	1.78
16891429--16891470	21	2.0	22	90	4	68	16	26	7	50	1.71
16906330--16906386	23	2.5	23	80	5	62	24	19	0	56	1.42
16906385--16906470	42	2.0	42	97	0	163	32	16	17	33	1.92
16908627--16908686	31	1.9	31	86	0	84	33	11	5	50	1.61
16915220--16915322	19	5.3	19	65	9	64	22	16	38	22	1.92
16915220--16915322	38	2.6	40	80	7	122	22	16	38	22	1.92
16917327--16917401	10	7.4	10	74	18	57	50	1	1	46	1.18
16917350--16917395	18	2.4	19	89	7	67	50	0	2	47	1.13
16917327--16917401	11	7.4	11	74	18	56	50	1	1	46	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16917350--16917403	18	2.9	18	81	15	65	50	0	1	48	1.11
16917930--16917989	22	2.7	23	79	7	61	28	10	26	35	1.89
16918073--16918159	44	2.0	44	84	8	115	44	28	8	18	1.78
16920050--16920104	26	2.2	26	83	9	69	36	7	3	52	1.47
16931935--16932002	21	3.2	21	87	2	91	38	16	19	26	1.92
16933378--16933426	11	4.5	11	79	2	55	28	0	0	71	0.86
16934263--16934326	15	4.6	14	73	21	55	7	14	1	76	1.07
16942815--16942859	11	4.3	11	86	11	67	66	8	24	0	1.20
16947867--16947941	37	2.0	37	92	0	123	36	9	22	32	1.86
16948431--16948467	17	2.2	17	90	0	56	35	24	32	8	1.85
16949383--16949485	32	3.1	32	76	13	118	24	13	28	33	1.93
16953104--16953223	42	2.8	42	83	6	143	26	34	15	23	1.95
16955126--16955172	21	2.2	21	84	0	58	29	19	25	25	1.98
16956183--16956262	39	2.1	39	100	0	160	38	10	7	43	1.66
16963664--16963704	5	8.2	5	88	0	64	36	21	0	41	1.54
16963746--16963790	15	3.0	15	84	12	65	55	20	2	22	1.54
16965367--16965402	14	2.6	14	100	0	72	13	19	13	52	1.74
16973017--16973055	2	19.5	2	100	0	78	51	0	0	48	1.00
16977614--16977651	20	1.9	20	100	0	76	44	21	5	28	1.73
16979082--16979235	28	5.3	30	79	9	124	40	10	8	40	1.70
16979072--16979235	59	2.8	58	77	5	161	38	10	7	42	1.69
16979072--16979235	29	5.6	28	78	7	112	38	10	7	42	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16984430--16984459	2	15.0	2	100	0	60	50	0	0	50	1.00
16987982--16988086	34	3.1	32	74	25	92	34	0	6	58	1.31
16988118--16988163	22	2.0	24	83	8	60	45	2	2	50	1.26
16988135--16988312	69	2.6	68	77	12	159	39	2	3	53	1.30
16987919--16988325	155	2.6	152	78	10	375	38	1	3	55	1.28
16988352--16988408	27	2.1	28	83	3	71	40	0	1	57	1.09
16988128--16988436	110	2.8	109	79	10	274	39	1	3	55	1.26
16987971--16988524	266	2.1	265	91	4	938	39	1	3	54	1.27
16988451--16988579	50	2.6	50	73	18	124	41	1	4	51	1.32
16991394--16991509	30	3.9	31	86	6	150	33	7	6	51	1.57
16991354--16991510	60	2.7	58	86	7	201	33	8	7	50	1.59
16992552--16992599	2	24.0	2	100	0	96	0	50	0	50	1.00
16993428--16993567	29	4.8	28	81	7	154	38	12	10	39	1.76
16993402--16993564	59	2.8	59	85	4	197	41	12	8	38	1.73
16998771--16998877	38	2.7	40	82	4	137	24	40	14	21	1.90
17001119--17001147	14	2.0	15	93	6	51	37	0	0	62	0.96
17003832--17003926	24	4.0	24	70	8	70	2	37	5	54	1.35
17003831--17003922	25	3.8	25	72	7	73	2	38	5	54	1.36
17004268--17004316	20	2.5	20	86	0	62	36	12	14	36	1.83
17004447--17004487	21	1.9	22	90	5	66	26	0	4	68	1.10
17004695--17004751	15	3.8	15	79	9	62	40	31	0	28	1.57
17013747--17013791	21	2.1	21	84	8	56	64	4	8	22	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17021614--17021680	16	4.5	15	67	17	50	46	0	0	53	1.00
17022310--17022427	36	3.3	36	76	7	96	29	20	15	34	1.93
17022328--17022441	36	3.2	36	79	2	95	30	21	13	35	1.91
17027939--17028009	35	2.0	35	83	5	90	35	26	7	30	1.83
17030745--17030796	22	2.4	23	84	12	58	28	11	21	38	1.88
17035923--17036376	62	7.3	62	87	1	615	34	12	16	36	1.87
17036674--17036716	21	2.0	22	81	4	52	41	0	0	58	0.98
17036690--17036955	27	10.2	27	68	18	129	43	1	1	53	1.21
17036724--17036976	125	2.0	124	92	2	418	43	2	1	51	1.27
17037012--17037070	31	1.9	31	83	10	77	47	1	0	50	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106